Re: [ccp4bb] COOT Real Space Refinement keyboard shortcut??
Dear Chris Are you trying to use the standard key binding a refine with auto-zone? Mine does not work whilst others such as m and n for zooming out and in do. For a I get the following message in the terminal: (graphics-general-key-press-hook 97) Key 97 not found in (scheme) key bindings Any ideas on how to fix this, anyone? I am using Coot 0.6.2 on CentOS 2.6.32-71.29.1.el6.x86_64 x86_64 Regards Petra -Original Message- From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Christopher Browning Sent: 27 March 2012 15:45 To: ccp4bb Subject: [ccp4bb] COOT Real Space Refinement keyboard shortcut?? Hi, I was wondering whether there was a way to assign a keyboard shortcut to the real space refine button in COOT. Atleast this way one does not have to keep looking back to where the real space refine button is to click it if you want to carry out the refinement. Cheers, Chris -- Dr. Christopher Browning Post-Doctor to Prof. Petr Leiman EPFL BSP-416 1015 Lausanne Switzerland Tel: 0041 (0) 02 16 93 04 40
Re: [ccp4bb] COOT Real Space Refinement keyboard shortcut??
Are you trying to use the standard key binding a refine with auto-zone? Mine does not work whilst others such as m and n for zooming out and in do. For a I get the following message in the terminal: (graphics-general-key-press-hook 97) Key 97 not found in (scheme) key bindings Any ideas on how to fix this, anyone? The activation order is: 1) click Real Space Refine icon 2) click atom at in the residue at the centre of range (and centre of screen, typically) 3) press a (i.e. the A key) This was built into Coot pre-user-defined-key-bindings. I rarely, if ever, use it now that there is the t short-cut. In fact, as I write this, I think that I might well take it away so that A can be used for something else instead. Paul.
Re: [ccp4bb] COOT Real Space Refinement keyboard shortcut??
A works as described but t is better! In coot 0.6.2 I added the line (add-key-binding Triple Refine t (lambda () (manual-refine-residues 1))) to the file ~/.coot-preferences/coot-preferences.scm Many thanks Petra From: CCP4 bulletin board [CCP4BB@JISCMAIL.AC.UK] on behalf of Paul Emsley [paul.ems...@bioch.ox.ac.uk] Sent: 13 April 2012 13:20 To: ccp4bb Subject: Re: [ccp4bb] COOT Real Space Refinement keyboard shortcut?? Are you trying to use the standard key binding a refine with auto-zone? Mine does not work whilst others such as m and n for zooming out and in do. For a I get the following message in the terminal: (graphics-general-key-press-hook 97) Key 97 not found in (scheme) key bindings Any ideas on how to fix this, anyone? The activation order is: 1) click Real Space Refine icon 2) click atom at in the residue at the centre of range (and centre of screen, typically) 3) press a (i.e. the A key) This was built into Coot pre-user-defined-key-bindings. I rarely, if ever, use it now that there is the t short-cut. In fact, as I write this, I think that I might well take it away so that A can be used for something else instead. Paul.
[ccp4bb] COOT Real Space Refinement keyboard shortcut??
Hi, I was wondering whether there was a way to assign a keyboard shortcut to the real space refine button in COOT. Atleast this way one does not have to keep looking back to where the real space refine button is to click it if you want to carry out the refinement. Cheers, Chris -- Dr. Christopher Browning Post-Doctor to Prof. Petr Leiman EPFL BSP-416 1015 Lausanne Switzerland Tel: 0041 (0) 02 16 93 04 40
Re: [ccp4bb] COOT Real Space Refinement keyboard shortcut??
Yes, look here: http://strucbio.biologie.uni-konstanz.de/ccp4wiki/index.php/Coot#Example_11:_Paul_Emsley.27s_Key_Bindings and the key bindings for r, x, t, R. JED. -- AstraZeneca UK Limited is a company incorporated in England and Wales with registered number: 03674842 and a registered office at 2 Kingdom Street, London, W2 6BD. Confidentiality Notice: This message is private and may contain confidential, proprietary and legally privileged information. If you have received this message in error, please notify us and remove it from your system and note that you must not copy, distribute or take any action in reliance on it. Any unauthorised use or disclosure of the contents of this message is not permitted and may be unlawful. Disclaimer: Email messages may be subject to delays, interception, non-delivery and unauthorised alterations. Therefore, information expressed in this message is not given or endorsed by AstraZeneca UK Limited unless otherwise notified by an authorised representative independent of this message. No contractual relationship is created by this message by any person unless specifically indicated by agreement in writing other than email. Monitoring: AstraZeneca UK Limited may monitor email traffic data and content for the purposes of the prevention and detection of crime, ensuring the security of our computer systems and checking Compliance with our Code of Conduct and Policies. -Original Message- From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Christopher Browning Sent: 27 March 2012 15:45 To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] COOT Real Space Refinement keyboard shortcut?? Hi, I was wondering whether there was a way to assign a keyboard shortcut to the real space refine button in COOT. Atleast this way one does not have to keep looking back to where the real space refine button is to click it if you want to carry out the refinement. Cheers, Chris -- Dr. Christopher Browning Post-Doctor to Prof. Petr Leiman EPFL BSP-416 1015 Lausanne Switzerland Tel: 0041 (0) 02 16 93 04 40
Re: [ccp4bb] COOT Real Space Refinement keyboard shortcut??
I suspect Chris is asking for the shortcut to the zone refinement button, i.e. invoking the manual zone selection. Not sure if there is a scripting way to do this, nothing obvious. On Tue, 2012-03-27 at 17:03 +0100, Debreczeni, Judit wrote: Yes, look here: http://strucbio.biologie.uni-konstanz.de/ccp4wiki/index.php/Coot#Example_11:_Paul_Emsley.27s_Key_Bindings and the key bindings for r, x, t, R. JED. -- AstraZeneca UK Limited is a company incorporated in England and Wales with registered number: 03674842 and a registered office at 2 Kingdom Street, London, W2 6BD. Confidentiality Notice: This message is private and may contain confidential, proprietary and legally privileged information. If you have received this message in error, please notify us and remove it from your system and note that you must not copy, distribute or take any action in reliance on it. Any unauthorised use or disclosure of the contents of this message is not permitted and may be unlawful. Disclaimer: Email messages may be subject to delays, interception, non-delivery and unauthorised alterations. Therefore, information expressed in this message is not given or endorsed by AstraZeneca UK Limited unless otherwise notified by an authorised representative independent of this message. No contractual relationship is created by this message by any person unless specifically indicated by agreement in writing other than email. Monitoring: AstraZeneca UK Limited may monitor email traffic data and content for the purposes of the prevention and detection of crime, ensuring the security of our computer systems and checking Compliance with our Code of Conduct and Policies. -Original Message- From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Christopher Browning Sent: 27 March 2012 15:45 To: CCP4BB@JISCMAIL.AC.UK Subject: [ccp4bb] COOT Real Space Refinement keyboard shortcut?? Hi, I was wondering whether there was a way to assign a keyboard shortcut to the real space refine button in COOT. Atleast this way one does not have to keep looking back to where the real space refine button is to click it if you want to carry out the refinement. Cheers, Chris -- Dr. Christopher Browning Post-Doctor to Prof. Petr Leiman EPFL BSP-416 1015 Lausanne Switzerland Tel: 0041 (0) 02 16 93 04 40 -- Hurry up before we all come back to our senses! Julian, King of Lemurs
