Dear CCP4 members,
Is there any program to superimpose the DNA structures? I also want to measure
the relative domain rotation angle. I tried using DynDom but it does not work
for me.
Can someone suggest a program which can output the rotation angles?
Thank you
Best Regards
Veerendra kumar
The concept of a domain in a DNA structure is a bit obscure. Could you be
more explicit about what you are trying to do? Do you mean protein domains in a
protein-DNA complex?
James
On Apr 12, 2013, at 12:18 AM, Veerendra Kumar (Dr) wrote:
Dear CCP4 members,
Is there any program to
by lsq. But it
is more common to look at DNA geometry directly for changes (3DNA or Curves+).
Original message
From: Veerendra Kumar (Dr) veeren...@ntu.edu.sg
Date: 04/12/2013 2:18 AM (GMT-05:00)
To: CCP4BB@JISCMAIL.AC.UK
Subject: [ccp4bb] DNA structures superimpose
Dear
Measuring Angles is another matter, but the superposition services of
the DrugSite will align an arbitrary selection of DNA residues (the
moving molecule) onto a target residue selection on another
structure. The selection can include a duplex, or even a duplex and
some protein residues.
