[ccp4bb] Fill-your-own-model with AlphaFill and other updates
Dear bulletin boarders, The previous version of this post did not come through. Apologies if this turns out to be a double post. To celebrate the publication of our AlphaFill paper (https://www.nature.com/articles/s41592-022-01685-y), we have released a new version of our https://alphafill.eu website. It has some (we hope) useful new features: - AlphaFold V3 and V4 entries (all Uniprot entries) are now available. When you ask for them, the AlphaFold model is downloaded through the 3D-Beacons system and filled on-the-fly. - You can download AlphaFill entries with your personal selection of transplants. The download button is above the transplant selection boxes. - Fill-your-own-model is now available for any structure model (computational or experimental). Just upload a valid mmCIF or PDB file and it will look for potential ligands ions and cofactors. This feature is completely new and constructive feedback is always appreciated. All the best, Maarten, Ida, Robbie and Tassos To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
[ccp4bb] Fill-your-own-model with AlphaFill and other updates
Dear bulletin boarders, To celebrate the publication of our AlphaFill paper (https://www.nature.com/articles/s41592-022-01685-y), we have released a new version of our https://alphafill.eu website. It has some (we hope) useful new features: - AlphaFold V3 and V4 entries (all Uniprot entries) are now available. When you ask for them, the AlphaFold model is downloaded through the 3D-Beacons system and filled on-the-fly. - You can download AlphaFill entries with your personal selection of transplants. The download button is above the transplant selection boxes. - Fill-your-own-model is now available for any structure model (computational or experimental). Just upload a valid mmCIF or PDB file and it will look for potential ligands ions and cofactors. This feature is completely new and constructive feedback is always appreciated. All the best, Maarten, Ida, Robbie and Tassos To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
