Re: [ccp4bb] HKL2000 and gcc4 - redux

2008-05-09 Thread Peter Keller
Hi, On Thu, 8 May 2008, James Stroud wrote: On May 7, 2008, at 3:07 PM, Chris Waddling wrote: so even temporarily putting a library where it doesn't belong Actually, this is what /usr/lib is for (except for the doesn't part). According to the Filesystem Hierarchy Standard 4.7 regarding

Re: [ccp4bb] HKL2000 and gcc4 - redux

2008-05-08 Thread James Stroud
On May 7, 2008, at 3:07 PM, Chris Waddling wrote: so even temporarily putting a library where it doesn't belong Actually, this is what /usr/lib is for (except for the doesn't part). According to the Filesystem Hierarchy Standard 4.7 regarding the general requirements and limitations of

Re: [ccp4bb] HKL2000 and gcc4 - redux

2008-05-07 Thread William Scott
mosflm is an incredibly great program, not to mention free as in beer... On May 7, 2008, at 3:07 PM, Chris Waddling wrote: my frustration at HKL2000 not working

Re: [ccp4bb] HKL2000 and gcc4 - redux

2008-05-07 Thread Gerard Bricogne
Dear Chris, Bill just beat me to writing the same. I would mention XDS as well. With best wishes, Gerard. -- On Wed, May 07, 2008 at 03:17:07PM -0700, William Scott wrote: mosflm is an incredibly great program, not to mention free as in beer... On

Re: [ccp4bb] HKL2000 and gcc4 - redux

2008-05-07 Thread Chris Waddling
] Date: Wed, 7 May 2008 23:23:34 +0100 To: Chris Waddling [EMAIL PROTECTED] Cc: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] HKL2000 and gcc4 - redux Dear Chris, Bill just beat me to writing the same. I would mention XDS as well. With best wishes

[ccp4bb] HKL2000 and gcc4

2008-05-05 Thread Chris Waddling
Basically, the newest version of HKL2000 won't run on Linux machines that do not have the libg2c.so.0 library (part of gcc3) in /usr/lib/ . This is a problem for us, as every new computer we acquire uses a version of Linux (that is no longer terribly new) that uses gcc4 (which does not have the

Re: [ccp4bb] HKL2000 and gcc4

2008-05-05 Thread James Stroud
Get a new sys-admin. He is getting in the way of your research. There is no good reason to be paranoid about this particular shared library sitting in /usr/lib. James On May 5, 2008, at 1:32 PM, Chris Waddling wrote: I have tried an experiment of putting the library into the /usr/lib/

Re: [ccp4bb] HKL2000 and gcc4

2008-05-05 Thread Roger Rowlett
Chris Waddling wrote: Basically, the newest version of HKL2000 won't run on Linux machines that do not have the libg2c.so.0 library (part of gcc3) in /usr/lib/ . This is a problem for us, as every new computer we acquire uses a version of Linux (that is no longer terribly new) that uses gcc4

Re: [ccp4bb] HKL2000 and gcc4

2008-05-05 Thread Robert Campbell
On Mon, 05 May 2008 13:48:00 -0600, James Stroud [EMAIL PROTECTED] wrote: Get a new sys-admin. He is getting in the way of your research. There is no good reason to be paranoid about this particular shared library sitting in /usr/lib. James On May 5, 2008, at 1:32 PM, Chris Waddling

Re: [ccp4bb] HKL2000 and gcc4

2008-05-05 Thread Robert Campbell
Hi Chris, On Mon, 05 May 2008 12:57:17 -0700, Chris Waddling [EMAIL PROTECTED] wrote: Robert, that's exactly what I keep asking him to do maybe I should take James Stroud's advice... Yes, maybe you should, if you cannot convince him of the error of his ways. :) BTW, nice to hear

Re: [ccp4bb] HKL2000 and gcc4

2008-05-05 Thread Sabuj Pattanayek
Hi, Have you installed the compatibility libraries compat-libstdc++-33 and libstdc++296? This is easily accomplished using yum if it is installed, e.g., $ yum -y install compat-libstdc++-33 compat-libstdc++-296 These libraries are required for programs compiled using GCC 3.x Those

Re: [ccp4bb] HKL2000 and gcc4

2008-05-05 Thread Michael Strickler
Basically, the newest version of HKL2000 won't run on Linux machines that do not have the libg2c.so.0 library (part of gcc3) in /usr/lib/ . This no doubt qualifies as an obvious question, but have you tried /usr/local/lib? That is often automatically searched for libraries on Linux systems,

Re: [ccp4bb] HKL2000 and gcc4

2008-05-05 Thread William Scott
On ubuntu, you can get this in the libg2c package. I agree with James Stroud. Fire the sysadmin and divvy the salary up amongst those who really need it. Time to raise the black flag and start slitting throats. On May 5, 2008, at 12:32 PM, Chris Waddling wrote: Basically, the newest

Re: [ccp4bb] HKL2000 and gcc4

2008-05-05 Thread Partha Chakrabarti
I had similar problem with Mosflm due to odd combination of Suse and AMD-64. Copied those files from a different installation, everything runs just fine.. would agree with James.. lol.. On Mon, May 5, 2008 at 8:32 PM, Chris Waddling [EMAIL PROTECTED] wrote: Basically, the newest version of

Re: [ccp4bb] HKL2000 and gcc4

2008-05-05 Thread Chris Waddling
Thanks all for your suggestions. It turns out that I was mis-defining the LD_LIBRARY_PATH (using 'set' instead of 'setenv'). Dumb mistake, but thanks to our sysadmin pointing this out, all's good. Chris