If you were born before the Dutch lost their first World Cup final, you may
remember the days when everybody knew that PDB entry 1tim was the structure
of chicken triosephosphate isomerase, 1hhb was human haemoglobin, 1lyz was hen
egg-white lysozyme, etc. Unfortunately, life for a structural
Gerard DVD Kleywegt wrote:
For a five-minute illustrated introduction to PDBprints (including
instructions on how to include them in your own webpages) point your
browser to:
http://pdbe.org/pdbprints
Good idea.
But the icons for published/unpublished, protein
On Thu, Jul 15, 2010 at 12:20:02PM +0100, Kevin Cowtan wrote:
Gerard DVD Kleywegt wrote:
For a five-minute illustrated introduction to PDBprints (including
instructions on how to include them in your own webpages) point your
browser to:
http://pdbe.org/pdbprints
Good
http://pdbe.org/pdbprints
Good idea.
But the icons for published/unpublished, protein present/protein absent,
nucleotide present/nucleotide absent and ligand present/ligand absent look
identical to me - I have to read the alt text.
Is there some colour thing going on here
I have trouble distinguishing the green and grey on
my MacBook. Herbert, who is colorblind, can just barely
distinguish that there are two different colors. Note
that 1 of 12 men are colorblind so this is actually quite
common. I would suggest using a pale transparent image
to suggest
On Thu, 15 Jul 2010, Tim Gruene wrote:
Maybe icons which are crossed out might be a better solution for the negative
ones.
The problem with this is that X-RAY crossed out suggests no X-rays, i.e.
a non X-ray experiment, not an X-ray experiment for which the structure
factors are
Better still, I can let you see them though my eyes. Here's what the
icons look like to me, and a link to Vizcheck, the tool I used to
generate them:
http://www.ysbl.york.ac.uk/~cowtan/colour/pdb/pdb.html
http://www.vischeck.com/vischeck/vischeckImage.php
Running this in various modes you
There are so many ways to address this issue. Perhaps the simplest would be to
use a combination of dimming and thick, solid borders vs. dashed borders to
distinguish the two states of the icons. Cheers! MM
On Jul 15, 2010, at 9:46 AM, Kevin Cowtan wrote:
Better still, I can let you see them
Original message
Date: Thu, 15 Jul 2010 09:56:58 -0400
From: Mischa Machius mach...@med.unc.edu
Subject: Re: [ccp4bb] Introducing PDBprints - salient,
at-a-glance info about PDB entries
To: CCP4BB@JISCMAIL.AC.UK
There are so many ways to address this issue.
Perhaps the simplest
...@xray.bmc.uu.se]
Sent: Thursday, July 15, 2010 4:02 AM
To: CCP4BB@JISCMAIL.AC.UK
Subject: [ccp4bb] Introducing PDBprints - salient, at-a-glance info about PDB
entries
If you were born before the Dutch lost their first World Cup final, you may
remember the days when everybody knew that PDB entry 1tim
On Thursday 15 July 2010 11:33:30 am Dunten, Pete W. wrote:
I like the species icon for 2cbr, human crabp in your list
http://xray.bmc.uu.se/gerard/structures_pdbprints.html.
Is it something from Greek mythology?
Ah yes, the minotaur genome project.
I like the species icons to some extent,
- salient,
at-a-glance info about PDB entries
To: CCP4BB@JISCMAIL.AC.UK
There are so many ways to address this issue.
Perhaps the simplest would be to use a combination
of dimming and thick, solid borders vs. dashed
borders to distinguish the two states of the icons.
Cheers! MM
On Jul
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