Subject: Re: [ccp4bb] Manipulating electron density
To: CCP4BB@JISCMAIL.AC.UK
Hi Jason,
If you already created a .map from CCP4 and changed the
extension to .ccp4. Then, to create a map in PyMol for your
protein only is the following.
create chainA, (chain A pdb name) #I think you can
Jason Porta jpo...@unmc.edu 05/09/09 3:19 PM
Hi everybody,
Sorry if this message was already asked (I could not find it in the
archives). I am making a figure of a recently solved protein structure
including the electron density. I would like the electron density to
cover only the
message
Date: Sat, 9 May 2009 18:53:35 -0500
From: Carlos Huerta carlos.hue...@utsouthwestern.edu
Subject: Re: [ccp4bb] Manipulating electron density
To: CCP4BB@JISCMAIL.AC.UK
Hi Jason,
If you already created a .map from CCP4 and changed the
extension to .ccp4. Then, to create a map in PyMol
On May 10, 2009, at 12:21 PM, Phoebe Rice wrote:
Of COURSE the map will look lovely if you carve it off at 1.5A
from your atoms. And your gels will look lovely too if you
just touch them up with with some white-out and a sharpie.
Do the honest thing and show the whole truth, using the
Hi everybody,
Sorry if this message was already asked (I could not find it in the archives).
I am making a
figure of a recently solved protein structure including the electron density. I
would like the
electron density to cover only the protein, and not the surrounding space where
the
Hi Jason,
If you already created a .map from CCP4 and changed the extension to .ccp4.
Then, to create a map in PyMol for your protein only is the following.
create chainA, (chain A pdb name) #I think you can leave out the pdb
name
isomesh mesh1, your map, 1.0, (chainA), carve=1.5
If
