[ccp4bb] Measuring the volume and surface area of an active site

2007-12-13 Thread Rajan Pillai 
Hi All,

Can anyone tell me if there is any program available that can measure the
surface area and volume of the active site of a protein?

Thanks,

Rajan.

Re: [ccp4bb] Measuring the volume and surface area of an active site

2007-12-13 Thread jacques-philippe colletier 

You can use CastP

http://sts.bioengr.uic.edu/castp/calculation.php

Best

Jacques


Le Dec 13, 2007 à 2:44 PM, Rajan Pillai a écrit :


Hi All,

Can anyone tell me if there is any program available that can  
measure the surface area and volume of the active site of a protein?


Thanks,

Rajan.




*
Dr. Jacques-Philippe Colletier
Biological Structure Group
MBI - UCLA / DOE
90095 Los Angeles, CA, USA
*
[EMAIL PROTECTED]
[EMAIL PROTECTED]
*

Re: [ccp4bb] Measuring the volume and surface area of an active site

2007-12-13 Thread Isaac Westwood 
Also VOIDOO is an excellent program for this. 

 

HYPERLINK
http://xray.bmc.uu.se/~gerard/manuals/voidoo.htmlhttp://xray.bmc.uu.se/~ge
rard/manuals/voidoo.html

 

Isaac

 

   _  

From: CCP4 bulletin board [mailto:[EMAIL PROTECTED] On Behalf Of Rajan
Pillai
Sent: 13 December 2007 22:45
To: CCP4BB@JISCMAIL.AC.UK
Subject: [ccp4bb] Measuring the volume and surface area of an active site

 

Hi All,

Can anyone tell me if there is any program available that can measure the
surface area and volume of the active site of a protein?

Thanks,

Rajan.

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09:15


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