Re: [ccp4bb] Off-topic: protein 2d diagrams

[Gert Vriend]

 Batch mode generation of residue-based diagrams of proteins

Fabien CampagneEmmanuel BettlerGert VriendHarel Weinstein
/Bioinformatics/, Volume 19, Issue 14, 22 September 2003, Pages 
1854–1855,https://doi.org/10.1093/bioinformatics/btg236

Published:
22 September 2003

On 4-8-2018 10:38, Joana Pereira wrote:

Dear CCP4 community,

I have seen many papers with detailed protein 2d diagrams like this one:

However, I can never find a reference for any tool that can compute 
such diagrams from a 3D structure. Do you know of any?


Many thanks and enjoy the warm weather!

Joana


—
Dr. Joana Pereira
Postdoctoral Researcher
Department of Protein Evolution

Max Planck Institute for Developmental Biology
Max-Planck-Ring 5
72076 Tübingen
GERMANY



To unsubscribe from the CCP4BB list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB=1






To unsubscribe from the CCP4BB list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB=1

Re: [ccp4bb] Off-topic: protein 2d diagrams

[Schertler Gebhard (PSI)]

Try

http://gpcrdb.org/

They have a tool for snake plots of GPCRs

Best
Gebhard



Prof. Gebhard F.X. Schertler
Structural Biology ETH Zürich D-BIOL

Head of Biology and Chemistry
Division
Paul Scherrer Institut
Laboratory of Biomolecular Research,
LBR
OFLC 109
CH-5232 Villigen PSI
gebhard.schert...@psi.ch
phone +41 56 310 4265

Am 04.08.2018 um 10:38 schrieb Joana Pereira 
mailto:joana.pere...@tuebingen.mpg.de>>:

Dear CCP4 community,

I have seen many papers with detailed protein 2d diagrams like this one:

<2D-transmembrane-protein-diagram-A-convenient-representation-of-the-receptor-sequence.jpeg>
However, I can never find a reference for any tool that can compute such 
diagrams from a 3D structure. Do you know of any?

Many thanks and enjoy the warm weather!

Joana


—
Dr. Joana Pereira
Postdoctoral Researcher
Department of Protein Evolution

Max Planck Institute for Developmental Biology
Max-Planck-Ring 5
72076 Tübingen
GERMANY



To unsubscribe from the CCP4BB list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB=1



To unsubscribe from the CCP4BB list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB=1

[ccp4bb] Off-topic: protein 2d diagrams

[Joana Pereira]

Dear CCP4 community,

I have seen many papers with detailed protein 2d diagrams like this one:


However, I can never find a reference for any tool that can compute such 
diagrams from a 3D structure. Do you know of any?

Many thanks and enjoy the warm weather!

Joana


—
Dr. Joana Pereira
Postdoctoral Researcher 
Department of Protein Evolution 

Max Planck Institute for Developmental Biology 
Max-Planck-Ring 5
72076 Tübingen 
GERMANY 


To unsubscribe from the CCP4BB list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/webadmin?SUBED1=CCP4BB=1