Re: [ccp4bb] Problems with iMosflm under CCP4i2
Hi folks Thank for the name-check Jon - I haven’t been employed on the Mosflm project since 2016, but it’s nice to be remembered. The place to look for a more definitive answer to the problem is in the date-stamped mosflm.lp file (called something like mosflm_202008319_124743.lp) which will give more information. It’s also worth looking at the History->Log tab in iMosflm (which gives a nice Tektronix 4010 rendering…) which may also indicate problems. The current version of CCP4 is distributed with the current iMosflm version (version 7.3.0, built by Charles Ballard on Thursday, May 07 2020 at 16:24) - so the first thing I would check is that your installed (and running…) version of CCP4 is the latest (use the update manager) - until I updated this morning it seemed to be running iMosflm 7.2.2 (which is obsolete and will probably give the “…detector type MAR” error). The second thing I’d do after that is download and run the definitive iMosflm from the MRC website: > https://www.mrc-lmb.cam.ac.uk/harry/imosflm/ver730/introduction.html and see if the problem persists with that. If it does, the best thing to do then is to discuss it with Andrew… Harry > On 30 Aug 2020, at 22:43, Jon Cooper > <488a26d62010-dmarc-requ...@jiscmail.ac.uk> wrote: > > Re: "I think MAR is the default detector, so I guess for some reason the > image header is not getting read correctly or is missing..." > > Thanks for the proper explanation, Mark. > > Indeed the manual says: > > "Default: DETECTOR defaults to MAR" > > Best wishes, Jon Cooper. jon.b.coo...@protonmail.com > > > > > > Original Message > On 30 Aug 2020, 18:20, Mark J van Raaij < mjvanra...@cnb.csic.es> wrote: > > Hi Jon, > I think MAR is the default detector, so I guess for some reason the image > header is not getting read correctly or is missing... > (I wrote this to Yahui also) > > Mark J van Raaij > Dpto de Estructura de Macromoleculas > Centro Nacional de Biotecnologia - CSIC > calle Darwin 3 > E-28049 Madrid, Spain > > > >> On 30 Aug 2020, at 19:16, Jon Cooper >> <488a26d62010-dmarc-requ...@jiscmail.ac.uk> wrote: >> >> Apologies, I see that MAR now sell the Pilatus 200K detector, which may >> partly explain things. >> >> Best wishes, Jon Cooper. jon.b.coo...@protonmail.com >> >> >> >> >> >> Original Message >> On 30 Aug 2020, 18:03, Jon Cooper < >> 488a26d62010-dmarc-requ...@jiscmail.ac.uk> wrote: >> >> Hello, have you installed the latest version of ccp4 or could you post the >> version number for mosflm that you are using? I know Harry has a penchant >> for detectors of all ages: >> https://doi.org/10.1080/0889311X.2019.1615483 >> >> but I have no idea why mosflm would think yours is one of these as they have >> not really been around for some time: >> >> https://1.bp.blogspot.com/-Y3HEe2KTczg/X0rPRm3ffNI/AfQ/EeSLElXobsUG-uIlWpU4BruLO3J6CChjACLcBGAsYHQ/s2048/IMG_1032.JPG >> >> (Picture c/o P. McArdle) >> >> Best wishes, Jon Cooper. jon.b.coo...@protonmail.com >> >> >> >> >> >> Original Message >> On 30 Aug 2020, 13:09, Yahui Liu < liuyahui1...@gmail.com> wrote: >> >> Dear CCP4er, >> I have some problem in loading the data(taken with a Dectris Pilatus 200K >> detector) with iMosflm. >> The iMosflm showed the error message “Error reading image header. Message >> from Mosflm is Incorrect size of image for detector type MAR” first (see the >> attachment), and quit directly. >> >> After that, I got another error in CCP4i2(the second attachment). >> >> Dr.Andrew Leslie was kind and test my data with iMosflm alone, it was >> totally fine for him to open my images. >> It seems like this only happened when we start iMosflm in CCP4i. >> >> Any one has some suggestions? >> >> >> Best >> Yahui >> >> >> To unsubscribe from the CCP4BB list, click the following link: >> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 >> >> >> To unsubscribe from the CCP4BB list, click the following link: >> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 >> >> >> To unsubscribe from the CCP4BB list, click the following link: >> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 >> > > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 > To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
Re: [ccp4bb] Problems with iMosflm under CCP4i2
Re: "I think MAR is the default detector, so I guess for some reason the image header is not getting read correctly or is missing..." Thanks for the proper explanation, Mark. Indeed the manual says: "Default: DETECTOR defaults to MAR" Best wishes, Jon Cooper. jon.b.coo...@protonmail.com Original Message On 30 Aug 2020, 18:20, Mark J van Raaij wrote: > Hi Jon, > I think MAR is the default detector, so I guess for some reason the image > header is not getting read correctly or is missing... > (I wrote this to Yahui also) > > Mark J van Raaij > Dpto de Estructura de Macromoleculas > Centro Nacional de Biotecnologia - CSIC > calle Darwin 3 > E-28049 Madrid, Spain > >> On 30 Aug 2020, at 19:16, Jon Cooper >> <[488a26d62010-dmarc-requ...@jiscmail.ac.uk](mailto:488a26d62010-dmarc-requ...@jiscmail.ac.uk)> >> wrote: >> >> Apologies, I see that MAR now sell the Pilatus 200K detector, which may >> partly explain things. >> >> Best wishes, Jon Cooper. jon.b.coo...@protonmail.com >> >> Original Message >> On 30 Aug 2020, 18:03, Jon Cooper < >> [488a26d62010-dmarc-requ...@jiscmail.ac.uk](mailto:488a26d62010-dmarc-requ...@jiscmail.ac.uk)> >> wrote: >> >>> Hello, have you installed the latest version of ccp4 or could you post the >>> version number for mosflm that you are using? I know Harry has a penchant >>> for detectors of all ages: >>> https://doi.org/10.1080/0889311X.2019.1615483 >>> >>> but I have no idea why mosflm would think yours is one of these as they >>> have not really been around for some time: >>> >>> https://1.bp.blogspot.com/-Y3HEe2KTczg/X0rPRm3ffNI/AfQ/EeSLElXobsUG-uIlWpU4BruLO3J6CChjACLcBGAsYHQ/s2048/IMG_1032.JPG >>> >>> (Picture c/o P. McArdle) >>> >>> Best wishes, Jon Cooper. jon.b.coo...@protonmail.com >>> >>> Original Message >>> On 30 Aug 2020, 13:09, Yahui Liu < >>> [liuyahui1...@gmail.com](mailto:liuyahui1...@gmail.com)> wrote: >>> Dear CCP4er, I have some problem in loading the data(taken with a Dectris Pilatus 200K detector) with iMosflm. The iMosflm showed the error message “Error reading image header. Message from Mosflm is Incorrect size of image for detector type MAR” first (see the attachment), and quit directly. After that, I got another error in CCP4i2(the second attachment). Dr.Andrew Leslie was kind and test my data with iMosflm alone, it was totally fine for him to open my images. It seems like this only happened when we start iMosflm in CCP4i. Any one has some suggestions? Best Yahui --- To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 --- To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 --- To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
Re: [ccp4bb] Problems with iMosflm under CCP4i2
Apologies, I see that MAR now sell the Pilatus 200K detector, which may partly explain things. Best wishes, Jon Cooper. jon.b.coo...@protonmail.com Original Message On 30 Aug 2020, 18:03, Jon Cooper wrote: > Hello, have you installed the latest version of ccp4 or could you post the > version number for mosflm that you are using? I know Harry has a penchant for > detectors of all ages: > https://doi.org/10.1080/0889311X.2019.1615483 > > but I have no idea why mosflm would think yours is one of these as they have > not really been around for some time: > > https://1.bp.blogspot.com/-Y3HEe2KTczg/X0rPRm3ffNI/AfQ/EeSLElXobsUG-uIlWpU4BruLO3J6CChjACLcBGAsYHQ/s2048/IMG_1032.JPG > > (Picture c/o P. McArdle) > > Best wishes, Jon Cooper. jon.b.coo...@protonmail.com > > Original Message > On 30 Aug 2020, 13:09, Yahui Liu wrote: > >> Dear CCP4er, >> I have some problem in loading the data(taken with a Dectris Pilatus 200K >> detector) with iMosflm. >> The iMosflm showed the error message “Error reading image header. Message >> from Mosflm is Incorrect size of image for detector type MAR” first (see the >> attachment), and quit directly. >> >> After that, I got another error in CCP4i2(the second attachment). >> >> Dr.Andrew Leslie was kind and test my data with iMosflm alone, it was >> totally fine for him to open my images. >> It seems like this only happened when we start iMosflm in CCP4i. >> >> Any one has some suggestions? >> >> Best >> Yahui >> >> --- >> >> To unsubscribe from the CCP4BB list, click the following link: >> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 >> >> --- >> >> To unsubscribe from the CCP4BB list, click the following link: >> https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
Re: [ccp4bb] Problems with iMosflm under CCP4i2
Hello, have you installed the latest version of ccp4 or could you post the version number for mosflm that you are using? I know Harry has a penchant for detectors of all ages: https://doi.org/10.1080/0889311X.2019.1615483 but I have no idea why mosflm would think yours is one of these as they have not really been around for some time: https://1.bp.blogspot.com/-Y3HEe2KTczg/X0rPRm3ffNI/AfQ/EeSLElXobsUG-uIlWpU4BruLO3J6CChjACLcBGAsYHQ/s2048/IMG_1032.JPG (Picture c/o P. McArdle) Best wishes, Jon Cooper. jon.b.coo...@protonmail.com Original Message On 30 Aug 2020, 13:09, Yahui Liu wrote: > Dear CCP4er, > I have some problem in loading the data(taken with a Dectris Pilatus 200K > detector) with iMosflm. > The iMosflm showed the error message “Error reading image header. Message > from Mosflm is Incorrect size of image for detector type MAR” first (see the > attachment), and quit directly. > > After that, I got another error in CCP4i2(the second attachment). > > Dr.Andrew Leslie was kind and test my data with iMosflm alone, it was totally > fine for him to open my images. > It seems like this only happened when we start iMosflm in CCP4i. > > Any one has some suggestions? > > Best > Yahui > > --- > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
