Re: [ccp4bb] PyMol tutorials: Summary

[Aaron Finke]

Hi all,

I’ll add to this list the videos by Pymol Ross- I particularly like his videos 
because he shows how to do things via both the GUI and the command line:

https://www.youtube.com/@pymolross

Best,
Aaron
--
Aaron Finke
Beamline Scientist, MAX IV
Lund University
e-mail: aaron.fi...@maxiv.lu.se

On Aug 4, 2023, at 18:08, Patrick Loll 
mailto:pjl...@gmail.com>> wrote:

Thanks to everyone who responded to my query about PyMol tutorials.  Several 
people evinced interest in seeing a summary of the results, so I’m attaching 
one below:

YouTube tutorials for PyMol:
=

1) Molecular Memory got a number of mentions:

https://www.youtube.com/@MolecularMemory/videos:   e.g. PyMol 101, lessons 1 & 2


2) Another recommended source was the bumbling biochemist site:

https://youtube.com/@thebumblingbiochemist (e.g., 
https://www.youtube.com/watch?v=GpxCGQAhgi8=15s)


3) Keni Vidilaseris has assembled a number of tutorials here:

https://youtube.com/playlist?list=PLfdvnKKZWSxCBL8uDQuc9bAttmAg3-_LS


4) Here are a couple of videos recommended by Mitch Miller:

https://www.youtube.com/watch?v=h5wKppcyzOw  &  
https://guides.lib.vt.edu/c.php?g=947485


5) Here’s a link recommended by Amit Bablekar:

https://www.youtube.com/watch?v=h5wKppcyzOw


6) And for cranky oldsters such as myself, here’s an actual document:

https://dasher.wustl.edu/bio5357/software/pymol/simple-tutorial.pdf


7) Finally, John Hasty also pointed out that there is a Google Colab notebook 
with various PyMol scripts.

Much obliged for the help!

Pat

---
Patrick J. Loll, Ph. D.  (he, him, his)
Professor of Biochemistry & Molecular Biology
Drexel University College of Medicine
Room 10-102 New College Building
245 N. 15th St., Mailstop 497
Philadelphia, PA  19102  USA

(215) 762-7706
pjl...@gmail.com
pj...@drexel.edu



To unsubscribe from the CCP4BB list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1

This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list 
hosted by www.jiscmail.ac.uk, terms & conditions are available at 
https://www.jiscmail.ac.uk/policyandsecurity/




To unsubscribe from the CCP4BB list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1

This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list 
hosted by www.jiscmail.ac.uk, terms & conditions are available at 
https://www.jiscmail.ac.uk/policyandsecurity/

[ccp4bb] PyMol tutorials: Summary

[Patrick Loll]

Thanks to everyone who responded to my query about PyMol tutorials.  Several 
people evinced interest in seeing a summary of the results, so I’m attaching 
one below:

YouTube tutorials for PyMol:
=
 
1) Molecular Memory got a number of mentions:
 
https://www.youtube.com/@MolecularMemory/videos:   e.g. PyMol 101, lessons 1 & 2
 
 
2) Another recommended source was the bumbling biochemist site:
 
https://youtube.com/@thebumblingbiochemist (e.g., 
https://www.youtube.com/watch?v=GpxCGQAhgi8=15s)
 
 
3) Keni Vidilaseris has assembled a number of tutorials here:
 
https://youtube.com/playlist?list=PLfdvnKKZWSxCBL8uDQuc9bAttmAg3-_LS
 
 
4) Here are a couple of videos recommended by Mitch Miller:

https://www.youtube.com/watch?v=h5wKppcyzOw  &  
https://guides.lib.vt.edu/c.php?g=947485
 
 
5) Here’s a link recommended by Amit Bablekar:
 
https://www.youtube.com/watch?v=h5wKppcyzOw
 

6) And for cranky oldsters such as myself, here’s an actual document:
 
https://dasher.wustl.edu/bio5357/software/pymol/simple-tutorial.pdf

 
7) Finally, John Hasty also pointed out that there is a Google Colab notebook 
with various PyMol scripts.

Much obliged for the help!

Pat

---
Patrick J. Loll, Ph. D.  (he, him, his)
Professor of Biochemistry & Molecular Biology
Drexel University College of Medicine
Room 10-102 New College Building
245 N. 15th St., Mailstop 497
Philadelphia, PA  19102  USA

(215) 762-7706
pjl...@gmail.com
pj...@drexel.edu



To unsubscribe from the CCP4BB list, click the following link:
https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1

This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list 
hosted by www.jiscmail.ac.uk, terms & conditions are available at 
https://www.jiscmail.ac.uk/policyandsecurity/