Dear CCP4bb,
almost 12h have passed since I posted this question to the board. Since some of
us get daily or weekly digests I will hold off with revealing the results. But
the replies thus far are really interesting and exciting, and this is without
any sarcasm tags. However we have only sampled 1.5% of the CCP4 community thus
far.
I will try to have an almost complete reply compiled to all questions raised in
the comments box, say in about one week.
Thanks to all those that participated,
Jürgen
..
Jürgen Bosch
Johns Hopkins University
Bloomberg School of Public Health
Department of Biochemistry & Molecular Biology
Johns Hopkins Malaria Research Institute
615 North Wolfe Street, W8708
Baltimore, MD 21205
Office: +1-410-614-4742
Lab: +1-410-614-4894
Fax: +1-410-955-2926
http://lupo.jhsph.edu
On Aug 28, 2013, at 11:32 AM, Bosch, Juergen wrote:
Since we keep discussing resolution cutoffs and the benefits of not to include
all data etc.
I thought I would crowd source your opinion on this particular data set.
processed with XDS, here's the XSCALE.LP output:
SUBSET OF INTENSITY DATA WITH SIGNAL/NOISE >= -3.0 AS FUNCTION OF RESOLUTION
RESOLUTION NUMBER OF REFLECTIONSCOMPLETENESS R-FACTOR R-FACTOR
COMPARED I/SIGMA R-meas CC(1/2) Anomal SigAno Nano
LIMIT OBSERVED UNIQUE POSSIBLE OF DATA observed expected
Corr
9.4353651009 1028 98.2% 1.7% 2.1%
5351 68.92 1.8% 100.0* 20.698 691
6.67 101531756 1760 99.8% 2.2% 2.4%
10134 58.30 2.4% 100.0* -120.6741404
5.44 131142217 2223 99.7% 3.4% 3.5%
13097 42.38 3.7%99.9* -100.7161845
4.71 152732583 2592 99.7% 3.2% 3.1%
15259 46.24 3.5%99.9* -140.7332212
4.22 171832907 2934 99.1% 3.2% 3.2%
17173 45.14 3.6%99.9* -160.7222538
3.85 190103183 3217 98.9% 4.4% 4.1%
19000 37.38 4.8%99.9* -160.7172794
3.56 207643441 3473 99.1% 5.9% 5.6%
20752 30.36 6.5%99.9* -130.7543061
3.33 225163681 3712 99.2% 8.8% 8.5%
22507 22.60 9.7%99.7* -110.7373293
3.14 247353963 4001 99.1% 12.4% 13.0%
24725 16.7713.5%99.5*-80.6963565
2.98 259314127 4161 99.2% 17.2% 18.1%
25924 12.8218.7%99.2*-60.7103751
2.84 265214291 4386 97.8% 25.4% 26.9%
264959.2627.6%98.3*-40.6833809
2.72 203573495 4592 76.1% 27.6% 29.3%
202777.9030.2%97.9* 00.7062826
2.61 159172860 4768 60.0% 33.7% 35.0%
158396.4137.0%96.6*-20.6972171
2.52 129492394 4944 48.4% 42.5% 45.1%
128774.9146.8%95.3* 00.6941692
2.43 103101993 5097 39.1% 47.8% 50.7%
102304.0853.0%94.4*-20.6701295
2.3681801693 5309 31.9% 56.4% 60.1%
80793.1263.0%92.2*-20.671 961
2.2960751381 5441 25.4% 69.9% 72.5%
59712.2878.9%87.2* -100.618 643
2.2240011077 5610 19.2% 82.9% 81.9%
38931.7896.0%80.7*-80.633 340
2.162491 799 5771 13.8% 78.0% 83.6%
23761.4792.9%75.9*-40.586 154
2.11 786 367 59016.2% 103.0%106.4%
6660.87 129.9%63.1*120.580 28
total 281631 49217 80920 60.8% 7.1% 7.2%
280625 21.54 7.8%99.9*-70.706 39073
And here's the link so you can voice your opinion in a Survey Monkey. Results
from this survey will be reported back to the CCP4bb.
http://www.surveymonkey.com/s/YNDKM6G
Thanks for your participation and no there's no iPad or iPod-touch to win, and
you also don't have to disclose your email.
The survey has only two questions, one is just a click the other one you
provide your opinion on your decision.
Thanks,
Jürgen
P.S low resolution shell starts at 44 Å - 9.43
P.P.S. the Table1 will be revealed once I report back the outcome of this
survey.
..
Jürgen Bosch
Johns Hopkins University
Bloomberg School of Public Health
Department of Biochemistry & Molecular Biology
Johns Hopkins Malaria Research Institute
615 North Wolfe Street, W8708
Baltimore, M
