Re: [ccp4bb] Rama-Z, Ramachandran plot validation in PDB-REDO

2021-01-19 Thread Pavel Afonine
Rama-Z is implemented in CCTBX meaning it is available to CCP4 and Phenix. Also it is reported in validation and refinement in Phenix (you get the number every time you run real- or reciprocal-space refinement!). Pavel On Mon, Jan 18, 2021 at 1:58 PM Boaz Shaanan wrote: > Hi, > Will it be

Re: [ccp4bb] Rama-Z, Ramachandran plot validation in PDB-REDO

2021-01-18 Thread Robbie Joosten
All the (library) code is open source with a BSD license, so yes this is possible. Cheers, Robbie > -Original Message- > From: Boaz Shaanan > Sent: Monday, January 18, 2021 22:57 > To: Robbie Joosten > Cc: CCP4BB@JISCMAIL.AC.UK > Subject: Re: [ccp4bb] Rama-Z,

Re: [ccp4bb] Rama-Z, Ramachandran plot validation in PDB-REDO

2021-01-18 Thread Boaz Shaanan
Hi, Will it be possible to include the rama-z analysis in Coot (perhaps as a plugin)? Boaz Boaz Shaanan, Ph.D. Department of Life Sciences Ben Gurion University of the Negev Beer Sheva Israel On Jan 18, 2021 22:47, Robbie Joosten wrote: Dear all, During the last CCP4 meeting, Oleg

[ccp4bb] Rama-Z, Ramachandran plot validation in PDB-REDO

2021-01-18 Thread Robbie Joosten
Dear all, During the last CCP4 meeting, Oleg presented our collaboration with the Phenix team, about the Ramachandran plot Z-score (or Rama-Z). Since then, some asked for a convenient way to get this score. You are now welcome to use: https://pdb-redo.eu/tortoize This is a quick and easy way