Re: [ccp4bb] Regarding File conversion
Thank You so much for your help and guidance. On Tue, Apr 19, 2022 at 8:22 PM Marcin Wojdyr wrote: > Plenty of options. I'll add one maintained by me. Type: > gemmi convert file.cif file.pdb > or use it here: > https://project-gemmi.github.io/wasm/convert/cif2pdb.html > > > Marcin > > On Tue, Apr 19, 2022 at 2:01 PM Abhilasha Thakur > wrote: > > > > Hello!! > > Greeting of the day, > > > > I want to know regarding file conversion from mcif file format to PDB > format of proteins. > > Is there any program or software that can be used to change one format > to another format. KIndly guide me about programs used for file conversion > or any other medium like python script or R script to convert the file > format without changing the coordinates of the file. > > Thankyou > > > > > > > > To unsubscribe from the CCP4BB list, click the following link: > > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 > To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
Re: [ccp4bb] Regarding File conversion
Hi, Phenix has a collection of tools like this: phenix.cif_as_mtz phenix.cif_as_pdb phenix.pdb_as_cif phenix.mtz_as_cif Pavel On Tue, Apr 19, 2022 at 7:52 AM Marcin Wojdyr wrote: > Plenty of options. I'll add one maintained by me. Type: > gemmi convert file.cif file.pdb > or use it here: > https://project-gemmi.github.io/wasm/convert/cif2pdb.html > > > Marcin > > On Tue, Apr 19, 2022 at 2:01 PM Abhilasha Thakur > wrote: > > > > Hello!! > > Greeting of the day, > > > > I want to know regarding file conversion from mcif file format to PDB > format of proteins. > > Is there any program or software that can be used to change one format > to another format. KIndly guide me about programs used for file conversion > or any other medium like python script or R script to convert the file > format without changing the coordinates of the file. > > Thankyou > > > > > > > > To unsubscribe from the CCP4BB list, click the following link: > > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 > > > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 > > This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a > mailing list hosted by www.jiscmail.ac.uk, terms & conditions are > available at https://www.jiscmail.ac.uk/policyandsecurity/ > To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
Re: [ccp4bb] Regarding File conversion
Plenty of options. I'll add one maintained by me. Type: gemmi convert file.cif file.pdb or use it here: https://project-gemmi.github.io/wasm/convert/cif2pdb.html Marcin On Tue, Apr 19, 2022 at 2:01 PM Abhilasha Thakur wrote: > > Hello!! > Greeting of the day, > > I want to know regarding file conversion from mcif file format to PDB format > of proteins. > Is there any program or software that can be used to change one format to > another format. KIndly guide me about programs used for file conversion or > any other medium like python script or R script to convert the file format > without changing the coordinates of the file. > Thankyou > > > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
Re: [ccp4bb] Regarding File conversion
cif2pdb will do the trick if conversion is all you need. I use mmCQL to first rename 'chains' before converting. For both see: https://github.com/PDB-REDO/cif-tools Cheers, Robbie > -Original Message- > From: CCP4 bulletin board On Behalf Of Frederic > Vellieux > Sent: Tuesday, April 19, 2022 15:56 > To: CCP4BB@JISCMAIL.AC.UK > Subject: Re: [ccp4bb] Regarding File conversion > > Hi, > > Last time I needed to do this the most convenient for me was to use Coot, > with a very large coordinate file. Coot pre v1 (v0 something) to read in > coordinates in the mmcif format and write out coordinates in the PDB > format. > > HTH, > > Fred. > > On 2022-04-19 14:01, Abhilasha Thakur wrote: > > Hello!! > > Greeting of the day, > > > > I want to know regarding file conversion from mcif file format to PDB > > format of proteins. > > Is there any program or software that can be used to change one format > > to another format. KIndly guide me about programs used for file > > conversion or any other medium like python script or R script to > > convert the file format without changing the coordinates of the file. > > > > > > Thankyou > > > > - > > > > To unsubscribe from the CCP4BB list, click the following link: > > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 > > ### > # > > To unsubscribe from the CCP4BB list, click the following link: > https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 > > This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a > mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at > https://www.jiscmail.ac.uk/policyandsecurity/ To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
Re: [ccp4bb] Regarding File conversion
Hi, Last time I needed to do this the most convenient for me was to use Coot, with a very large coordinate file. Coot pre v1 (v0 something) to read in coordinates in the mmcif format and write out coordinates in the PDB format. HTH, Fred. On 2022-04-19 14:01, Abhilasha Thakur wrote: Hello!! Greeting of the day, I want to know regarding file conversion from mcif file format to PDB format of proteins. Is there any program or software that can be used to change one format to another format. KIndly guide me about programs used for file conversion or any other medium like python script or R script to convert the file format without changing the coordinates of the file. Thankyou - To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
[ccp4bb] Regarding File conversion
Hello!! Greeting of the day, I want to know regarding file conversion from *mcif file format *to *PDB format of proteins.* Is there any program or software that can be used to change one format to another format. KIndly guide me about programs used for file conversion or any other medium like python script or R script to convert the file format without changing the coordinates of the file. Thankyou To unsubscribe from the CCP4BB list, click the following link: https://www.jiscmail.ac.uk/cgi-bin/WA-JISC.exe?SUBED1=CCP4BB=1 This message was issued to members of www.jiscmail.ac.uk/CCP4BB, a mailing list hosted by www.jiscmail.ac.uk, terms & conditions are available at https://www.jiscmail.ac.uk/policyandsecurity/
