Re: [ccp4bb] Regarding symmetry notion in coot

2018-06-21 Thread Edward A. Berry
to orig coordinates Would something like that work? *From:*CCP4 bulletin board *On Behalf Of *Paul Emsley *Sent:* 21 June 2018 17:30 *To:* CCP4BB@JISCMAIL.AC.UK *Subject:* Re: [ccp4bb] Regarding symmetry notion in coot On 20/06/18 20:49, Anurag Misra wrote: What is the meaning of the last field

Re: [ccp4bb] Regarding symmetry notion in coot

2018-06-21 Thread Eleanor Dodson
And so does MOLREP.. Phaser too please? E And Paul - yes; please cut and paste.. E On 21 June 2018 at 20:00, George Sheldrick wrote: > For small molecules, programs such as SHELXT move the structure to be as > near as possible to the center of the unit-cell, not the origin. Failure to > do so

Re: [ccp4bb] Regarding symmetry notion in coot

2018-06-21 Thread George Sheldrick
For small molecules, programs such as SHELXT move the structure to be as near as possible to the center of the unit-cell, not the origin. Failure to do so may cause a 'checkCIF alert'. George On 06/21/2018 09:34 PM, John Berrisford wrote: From a PDB deposition point of view, I echo Paul’s

Re: [ccp4bb] Regarding symmetry notion in coot

2018-06-21 Thread John Berrisford
hn From: CCP4 bulletin board On Behalf Of Paul Emsley Sent: 21 June 2018 17:30 To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] Regarding symmetry notion in coot On 20/06/18 20:49, Anurag Misra wrote: What is the meaning of the last field — the one in curly brackets -- that describes

Re: [ccp4bb] Regarding symmetry notion in coot

2018-06-21 Thread Paul Emsley
On 21/06/18 18:36, Eleanor Dodson wrote: > Paul - where and what is the definition of this line?? > > Dear Eleanor, It is not clear to me how I should answer other than cutting and pasting Section 4.11 "Symmetry" of the manual. Is that what you want me to do? Regards, Paul.

Re: [ccp4bb] Regarding symmetry notion in coot

2018-06-21 Thread Eleanor Dodson
Paul - where and what is the definition of this line?? eleanor On 21 June 2018 at 17:29, Paul Emsley wrote: > > On 20/06/18 20:49, Anurag Misra wrote: > > What is the meaning of the last field — the one in curly brackets -- that > describes the symmetry transformation of a given molecule in

Re: [ccp4bb] Regarding symmetry notion in coot

2018-06-21 Thread Paul Emsley
On 20/06/18 20:49, Anurag Misra wrote: > What is the meaning of the last field — the one in curly brackets -- that > describes the symmetry transformation of a given molecule in coot? See Section 4.11 of Coot User Manual: "Symmetry" > For example, for > a given X Y Z, coot displays the

[ccp4bb] Regarding symmetry notion in coot

2018-06-20 Thread Anurag Misra
Dear all, What is the meaning of the last field — the one in curly brackets -- that describes the symmetry transformation of a given molecule in coot? For example, for a given X Y Z, coot displays the symmetry transformation of an equivalent position as " -X, Y+1/2, Z + (0 -1 1) & { 1 0 1 }”.