Re: [ccp4bb] STRAP secondary structure

2013-04-27 Thread Faisal Tarique
Dear John you can try Promal3D..it will work hopefully.. bye and take care On Sat, Apr 27, 2013 at 6:27 AM, Mike John perturb-w...@hotmail.com wrote: Hello, Every one, I am preparing a ppt presentation in an emergency style. What I want is a graph of sequence alignment with secondary

Re: [ccp4bb] STRAP secondary structure

2013-04-27 Thread Appu kumar
Dear John, You can you the Prosmart http://www2.mrc-lmb.cam.ac.uk/groups/murshudov/content/prosmart/documentation.html and also pdbsum can give what you asking for. Thanks Appu On 27 April 2013 02:57, Mike John perturb-w...@hotmail.com wrote: Hello, Every one, I am preparing a ppt

Re: [ccp4bb] STRAP secondary structure

2013-04-27 Thread Edward A. Berry
Hope you already finished your presentation, but if not here is anther way. You don't mention whether you have predicted secondary structure or you want to base it on actual structure for one or more of the sequences. If the latter, CCP4's procheck makes such a cartoon in its postscript pages,

Re: [ccp4bb] STRAP secondary structure

2013-04-27 Thread Vandna Kukshal
Hi john i like espript to do this for instant. here is the link http://espript.ibcp.fr/ESPript/ESPript/ On Fri, Apr 26, 2013 at 7:57 PM, Mike John perturb-w...@hotmail.com wrote: Hello, Every one, I am preparing a ppt presentation in an emergency style. What I want is a graph of sequence

[ccp4bb] STRAP secondary structure

2013-04-26 Thread Mike John
Hello, Every one, I am preparing a ppt presentation in an emergency style. What I want is a graph of sequence alignment with secondary structure on the top. Using STRAP i can got alignment nicely, but did not know the tips to add secondary structure on top. Anybody of experienced can give me