Hi Rojan
The tables you refer to are histograms (see the documentation and the original
paper), with the
first two columns defining the left and right hand side bounds of each
histogram bin. The first table is a histogram of the
distances between the surfaces, with the area being that associated with
the surface patches associated with the inter-molecular distances within that
bin. The
remaining columns are cumulatives of this and percentages of the same. The
second table is similar, but instead the histogram bins define the spread
of the -ve dot products of the normals. The first pair of tables is for
the second surface with respect to the first, these tables are then
repeated for the first surface with respect to the second.
These tables are given mainly for diagnostic purposes. The final table at
the end summarises the mean and median values of the histograms and their
averages, and finally gives Sc.
best wishes
Mike Lawrence
On 20/06/2011, at 11:28 AM, Rojan Shrestha wrote:
Hello,
Does somebody know the meaning of output of SC?
What is the meaning of From and To in “Distance between surfaces”?
From To Area Cumulative_Area %
Cumu. %
Similarly, what is the meaning of surface complementarity?
From To Number %
Does this Number indicates the residue number?
Regards,
Rojan
Mike Lawrence, PhD
Associate Professor and WEHI Fellow
Division of Structural Biology
Walter and Eliza Hall Institute of Medical Research
1G Royal Parade, Parkville
Victoria 3052, AUSTRALIA
Tel. 61-3-9345-2693
Fax 61-3-9345-2686
Email: lawre...@wehi.edu.au
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