Re: [ccp4bb] The discrepancy for determination of Ramachandran outliers by Coot and MolProbity

2015-02-20 Thread B.Lohkamp
Just recently, we updated Coot to use the Ramachandran plot according to some newer distribution as defined by MolProbity (thanks to Kevin Cowtan's clipper). This is available from Coot rev 5581. However, please keep in mind as pointed out by Gert that there are different version of the

Re: [ccp4bb] The discrepancy for determination of Ramachandran outliers by Coot and MolProbity

2015-02-19 Thread Gert Vriend
On 19-2-2015 1:38, Smith Lee wrote: Dear All, It often finds for the Ramachandran favored determined by Coot, MolProbity regards as Ramachandran outliers. There are earlier posts regards Coot and MolProbity has different database for the determination of the Ramachandran plots. Then will you

[ccp4bb] The discrepancy for determination of Ramachandran outliers by Coot and MolProbity

2015-02-18 Thread Smith Lee
Dear All, It often finds for the Ramachandran favored determined by Coot, MolProbity regards as Ramachandran outliers. There are earlier posts regards Coot and MolProbity has different database for the determination of the Ramachandran plots. Then will you please let me know the correct way to