Re: [ccp4bb] XDS Viewer

2009-06-11 Thread Sangeetha Vedula
I moved the program to /Applications as well.

When I start XDSviewer giving it the whole path, it errors out, saying:

/Applications/XDS-Viewer.app/Contents/MacOS/XDS-Viewer: line 6:   818 Bus
error
  $CURRENT_DIR/xds-viewer-bin

If I double-click on XDS-Viewer.app icon, it begins to start and quits
immediately.

Could someone tell me what this is, and how to fix it?

Thanks,
Sangeetha.


On Thu, Mar 5, 2009 at 9:21 AM, Derek Logan derek.lo...@mbfys.lu.se wrote:

 Hi,

 I very recently downloaded and installed the Mac OS X executable of the new
 XDS Viewer program to inspect diffraction images. I have moved the program
 to /Applications. It starts up fine, but when I try to load an image it
 complains:

 Cannot open file! For image formats other than .cbf you need to install
 the 2cbf script. Please make sure you have added it to the executable
 path.

 Now 2cbf is in /usr/local/bin, which is in my path. I use /bin/tcsh as
 shell. Is there some confusion between the shell used by XDS Viewer (if any)
 and my preferred shell? Looking in the XDS Viewer.app directory I can't find
 any obvious clues.

 Thanks
 Derek

 __

 Derek Logan   tel: +46 46 222 1443

 Associate Professor   fax: +46 46 222 4692

 Molecular Biophysics  mob: +46 76 8585 707

 Centre for Molecular Protein Science

 Lund University, Box 124, 221 00 Lund, Sweden




Re: [ccp4bb] XDS Viewer

2009-06-11 Thread Ben Eisenbraun
Hi Sangeetha,

On Thu, Jun 11, 2009 at 01:26:14PM -0400, Sangeetha Vedula wrote:
 On Thu, Jun 11, 2009 at 1:23 PM, Sangeetha Vedula wrote:
  When I start XDSviewer giving it the whole path, it errors out, saying:
 
  /Applications/XDS-Viewer.app/Contents/MacOS/XDS-Viewer: line 6:   818 Bus
  error
$CURRENT_DIR/xds-viewer-bin
 
  If I double-click on XDS-Viewer.app icon, it begins to start and quits
  immediately.

 I am using a MacBook Pro running OS 10.4.11. I downloaded XDSViewer from:

It's usually best to start your own thread instead of replying to a very
old one.  It helps to keep your message from getting lost.

In any case, the version of XDS-Viewer on Source Forge does not appear to
be compatible with OS X 10.4.  I had to recompile it for our 10.4 machines.

-ben

--
| Ben Eisenbraun  | Software Maintainer|
| Structural Biology Grid | http://sbgrid.org  |
| Harvard Medical School  | http://hms.harvard.edu |


[ccp4bb] XDS Viewer

2009-03-05 Thread Derek Logan

Hi,

I very recently downloaded and installed the Mac OS X executable of  
the new XDS Viewer program to inspect diffraction images. I have moved  
the program to /Applications. It starts up fine, but when I try to  
load an image it complains:


Cannot open file! For image formats other than .cbf you need to  
install the 2cbf script. Please make sure you have added it to the  
executable path.


Now 2cbf is in /usr/local/bin, which is in my path. I use /bin/tcsh as  
shell. Is there some confusion between the shell used by XDS Viewer  
(if any) and my preferred shell? Looking in the XDS Viewer.app  
directory I can't find any obvious clues.


Thanks
Derek
__
Derek Logan   tel: +46 46 222 1443
Associate Professor   fax: +46 46 222 4692
Molecular Biophysics  mob: +46 76 8585 707
Centre for Molecular Protein Science
Lund University, Box 124, 221 00 Lund, Sweden



Re: [ccp4bb] XDS Viewer

2009-03-05 Thread Andrzej Lyskowski

Hi,

 Once you have a 2cbf in /usr/local/bin and start XDS Viewer from a 
terminal (/Applications/XDS-Viewer.app/Contents/MacOS/XDS-Viewer) it 
seems to work fine.


 However for the diffraction image viewing I would suggest adxv. You 
can find it at: http://www.scripps.edu/~arvai/adxv.html.


Andrzej

On 5/3/09 15:21, Derek Logan wrote:

Hi,

I very recently downloaded and installed the Mac OS X executable of the
new XDS Viewer program to inspect diffraction images. I have moved the
program to /Applications. It starts up fine, but when I try to load an
image it complains:

Cannot open file! For image formats other than .cbf you need to
install the 2cbf script. Please make sure you have added it to the
executable path.

Now 2cbf is in /usr/local/bin, which is in my path. I use /bin/tcsh as
shell. Is there some confusion between the shell used by XDS Viewer (if
any) and my preferred shell? Looking in the XDS Viewer.app directory I
can't find any obvious clues.

Thanks
Derek

__

Derek Logan tel: +46 46 222 1443

Associate Professor fax: +46 46 222 4692

Molecular Biophysics mob: +46 76 8585 707

Centre for Molecular Protein Science

Lund University, Box 124, 221 00 Lund, Sweden




Re: [ccp4bb] XDS Viewer

2009-03-05 Thread Derek Logan

Hi Andrzej,

Thanks for the tip. It just seemed to me that since the package  
installed as a typical Mac OS X clickable program, then it was meant  
to run that way. Thanks also for info about adxv. I wasn't aware that  
there was a Mac executable for this program.


Kay, the image I was trying to read was a .mar2560 file frpm the  
mar555 flat panel detector, which I had previously processed using XDS.


Cheers
Derek

On Mar 6, 2009, week10, at 8:10, Andrzej Lyskowski wrote:


Hi,

 Once you have a 2cbf in /usr/local/bin and start XDS Viewer from a
terminal (/Applications/XDS-Viewer.app/Contents/MacOS/XDS-Viewer) it
seems to work fine.

 However for the diffraction image viewing I would suggest adxv. You
can find it at: http://www.scripps.edu/~arvai/adxv.html.

Andrzej

On 5/3/09 15:21, Derek Logan wrote:

Hi,

I very recently downloaded and installed the Mac OS X executable of  
the
new XDS Viewer program to inspect diffraction images. I have moved  
the
program to /Applications. It starts up fine, but when I try to load  
an

image it complains:

Cannot open file! For image formats other than .cbf you need to
install the 2cbf script. Please make sure you have added it to the
executable path.

Now 2cbf is in /usr/local/bin, which is in my path. I use /bin/tcsh  
as
shell. Is there some confusion between the shell used by XDS Viewer  
(if
any) and my preferred shell? Looking in the XDS Viewer.app  
directory I

can't find any obvious clues.

Thanks
Derek

__

Derek Logan tel: +46 46 222 1443

Associate Professor fax: +46 46 222 4692

Molecular Biophysics mob: +46 76 8585 707

Centre for Molecular Protein Science

Lund University, Box 124, 221 00 Lund, Sweden




__
Derek Logan   tel: +46 46 222 1443
Associate Professor   fax: +46 46 222 4692
Molecular Biophysics  mob: +46 76 8585 707
Centre for Molecular Protein Science
Lund University, Box 124, 221 00 Lund, Sweden