Re: [ccp4bb] XDS Viewer
I moved the program to /Applications as well. When I start XDSviewer giving it the whole path, it errors out, saying: /Applications/XDS-Viewer.app/Contents/MacOS/XDS-Viewer: line 6: 818 Bus error $CURRENT_DIR/xds-viewer-bin If I double-click on XDS-Viewer.app icon, it begins to start and quits immediately. Could someone tell me what this is, and how to fix it? Thanks, Sangeetha. On Thu, Mar 5, 2009 at 9:21 AM, Derek Logan derek.lo...@mbfys.lu.se wrote: Hi, I very recently downloaded and installed the Mac OS X executable of the new XDS Viewer program to inspect diffraction images. I have moved the program to /Applications. It starts up fine, but when I try to load an image it complains: Cannot open file! For image formats other than .cbf you need to install the 2cbf script. Please make sure you have added it to the executable path. Now 2cbf is in /usr/local/bin, which is in my path. I use /bin/tcsh as shell. Is there some confusion between the shell used by XDS Viewer (if any) and my preferred shell? Looking in the XDS Viewer.app directory I can't find any obvious clues. Thanks Derek __ Derek Logan tel: +46 46 222 1443 Associate Professor fax: +46 46 222 4692 Molecular Biophysics mob: +46 76 8585 707 Centre for Molecular Protein Science Lund University, Box 124, 221 00 Lund, Sweden
Re: [ccp4bb] XDS Viewer
Hi Sangeetha, On Thu, Jun 11, 2009 at 01:26:14PM -0400, Sangeetha Vedula wrote: On Thu, Jun 11, 2009 at 1:23 PM, Sangeetha Vedula wrote: When I start XDSviewer giving it the whole path, it errors out, saying: /Applications/XDS-Viewer.app/Contents/MacOS/XDS-Viewer: line 6: 818 Bus error $CURRENT_DIR/xds-viewer-bin If I double-click on XDS-Viewer.app icon, it begins to start and quits immediately. I am using a MacBook Pro running OS 10.4.11. I downloaded XDSViewer from: It's usually best to start your own thread instead of replying to a very old one. It helps to keep your message from getting lost. In any case, the version of XDS-Viewer on Source Forge does not appear to be compatible with OS X 10.4. I had to recompile it for our 10.4 machines. -ben -- | Ben Eisenbraun | Software Maintainer| | Structural Biology Grid | http://sbgrid.org | | Harvard Medical School | http://hms.harvard.edu |
[ccp4bb] XDS Viewer
Hi, I very recently downloaded and installed the Mac OS X executable of the new XDS Viewer program to inspect diffraction images. I have moved the program to /Applications. It starts up fine, but when I try to load an image it complains: Cannot open file! For image formats other than .cbf you need to install the 2cbf script. Please make sure you have added it to the executable path. Now 2cbf is in /usr/local/bin, which is in my path. I use /bin/tcsh as shell. Is there some confusion between the shell used by XDS Viewer (if any) and my preferred shell? Looking in the XDS Viewer.app directory I can't find any obvious clues. Thanks Derek __ Derek Logan tel: +46 46 222 1443 Associate Professor fax: +46 46 222 4692 Molecular Biophysics mob: +46 76 8585 707 Centre for Molecular Protein Science Lund University, Box 124, 221 00 Lund, Sweden
Re: [ccp4bb] XDS Viewer
Hi, Once you have a 2cbf in /usr/local/bin and start XDS Viewer from a terminal (/Applications/XDS-Viewer.app/Contents/MacOS/XDS-Viewer) it seems to work fine. However for the diffraction image viewing I would suggest adxv. You can find it at: http://www.scripps.edu/~arvai/adxv.html. Andrzej On 5/3/09 15:21, Derek Logan wrote: Hi, I very recently downloaded and installed the Mac OS X executable of the new XDS Viewer program to inspect diffraction images. I have moved the program to /Applications. It starts up fine, but when I try to load an image it complains: Cannot open file! For image formats other than .cbf you need to install the 2cbf script. Please make sure you have added it to the executable path. Now 2cbf is in /usr/local/bin, which is in my path. I use /bin/tcsh as shell. Is there some confusion between the shell used by XDS Viewer (if any) and my preferred shell? Looking in the XDS Viewer.app directory I can't find any obvious clues. Thanks Derek __ Derek Logan tel: +46 46 222 1443 Associate Professor fax: +46 46 222 4692 Molecular Biophysics mob: +46 76 8585 707 Centre for Molecular Protein Science Lund University, Box 124, 221 00 Lund, Sweden
Re: [ccp4bb] XDS Viewer
Hi Andrzej, Thanks for the tip. It just seemed to me that since the package installed as a typical Mac OS X clickable program, then it was meant to run that way. Thanks also for info about adxv. I wasn't aware that there was a Mac executable for this program. Kay, the image I was trying to read was a .mar2560 file frpm the mar555 flat panel detector, which I had previously processed using XDS. Cheers Derek On Mar 6, 2009, week10, at 8:10, Andrzej Lyskowski wrote: Hi, Once you have a 2cbf in /usr/local/bin and start XDS Viewer from a terminal (/Applications/XDS-Viewer.app/Contents/MacOS/XDS-Viewer) it seems to work fine. However for the diffraction image viewing I would suggest adxv. You can find it at: http://www.scripps.edu/~arvai/adxv.html. Andrzej On 5/3/09 15:21, Derek Logan wrote: Hi, I very recently downloaded and installed the Mac OS X executable of the new XDS Viewer program to inspect diffraction images. I have moved the program to /Applications. It starts up fine, but when I try to load an image it complains: Cannot open file! For image formats other than .cbf you need to install the 2cbf script. Please make sure you have added it to the executable path. Now 2cbf is in /usr/local/bin, which is in my path. I use /bin/tcsh as shell. Is there some confusion between the shell used by XDS Viewer (if any) and my preferred shell? Looking in the XDS Viewer.app directory I can't find any obvious clues. Thanks Derek __ Derek Logan tel: +46 46 222 1443 Associate Professor fax: +46 46 222 4692 Molecular Biophysics mob: +46 76 8585 707 Centre for Molecular Protein Science Lund University, Box 124, 221 00 Lund, Sweden __ Derek Logan tel: +46 46 222 1443 Associate Professor fax: +46 46 222 4692 Molecular Biophysics mob: +46 76 8585 707 Centre for Molecular Protein Science Lund University, Box 124, 221 00 Lund, Sweden