Re: [ccp4bb] off-topic Electron density map rendering..
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Appalling if the program name is not mentioned in the manuscript. Best, Tim On 02/12/2014 03:08 AM, Francis Reyes wrote: Anyone know the program used to render the electron density maps for the fungal FAS in Figure 3c-3h from the paper Mueller, M., Jenni, S. Ban, N. Strategies for crystallization and structure determination of very large macromolecular assemblies. Curr Opin Struct Biol 17, 572–579 (2007).. The depth cueing is phenomenal. I'm thinking O.. I can't seem to get it right in Pymol. Thanks!, F - Francis E. Reyes PhD 215 UCB University of Colorado at Boulder Publications Citations: http://scholar.google.com/citations?user=FW4-CaQJhl=en -- - -- - -- Dr Tim Gruene Institut fuer anorganische Chemie Tammannstr. 4 D-37077 Goettingen GPG Key ID = A46BEE1A -BEGIN PGP SIGNATURE- Version: GnuPG v1.4.12 (GNU/Linux) Comment: Using GnuPG with Icedove - http://www.enigmail.net/ iD8DBQFS+zxcUxlJ7aRr7hoRArIAAJ9FUnn373PWm3uxef4x5LdivxfhBgCfawkH oE12Z6GXrEAAWV2UJKpKDYM= =b53q -END PGP SIGNATURE-
Re: [ccp4bb] off-topic Electron density map rendering..
You're absolutely right Tim, but unfortunately that's very common these days not to mention the rendering program and ignore the efforts of those who developed it. Boaz Boaz Shaanan, Ph.D. Dept. of Life Sciences Ben-Gurion University of the Negev Beer-Sheva 84105 Israel E-mail: bshaa...@bgu.ac.il Phone: 972-8-647-2220 Skype: boaz.shaanan Fax: 972-8-647-2992 or 972-8-646-1710 From: CCP4 bulletin board [CCP4BB@JISCMAIL.AC.UK] on behalf of Tim Gruene [t...@shelx.uni-ac.gwdg.de] Sent: Wednesday, February 12, 2014 11:18 AM To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] off-topic Electron density map rendering.. -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Appalling if the program name is not mentioned in the manuscript. Best, Tim On 02/12/2014 03:08 AM, Francis Reyes wrote: Anyone know the program used to render the electron density maps for the fungal FAS in Figure 3c-3h from the paper Mueller, M., Jenni, S. Ban, N. Strategies for crystallization and structure determination of very large macromolecular assemblies. Curr Opin Struct Biol 17, 572–579 (2007).. The depth cueing is phenomenal. I'm thinking O.. I can't seem to get it right in Pymol. Thanks!, F - Francis E. Reyes PhD 215 UCB University of Colorado at Boulder Publications Citations: http://scholar.google.com/citations?user=FW4-CaQJhl=en -- - -- - -- Dr Tim Gruene Institut fuer anorganische Chemie Tammannstr. 4 D-37077 Goettingen GPG Key ID = A46BEE1A -BEGIN PGP SIGNATURE- Version: GnuPG v1.4.12 (GNU/Linux) Comment: Using GnuPG with Icedove - http://www.enigmail.net/ iD8DBQFS+zxcUxlJ7aRr7hoRArIAAJ9FUnn373PWm3uxef4x5LdivxfhBgCfawkH oE12Z6GXrEAAWV2UJKpKDYM= =b53q -END PGP SIGNATURE-
Re: [ccp4bb] off-topic Electron density map rendering..
I believe that has been rendered in O, selecting a different line drawing mode you could get by hitting 'F3' a couple of times, IIRC. On 12 February 2014 12:05, Boaz Shaanan bshaa...@bgu.ac.il wrote: You're absolutely right Tim, but unfortunately that's very common these days not to mention the rendering program and ignore the efforts of those who developed it. Boaz Boaz Shaanan, Ph.D. Dept. of Life Sciences Ben-Gurion University of the Negev Beer-Sheva 84105 Israel E-mail: bshaa...@bgu.ac.il Phone: 972-8-647-2220 Skype: boaz.shaanan Fax: 972-8-647-2992 or 972-8-646-1710 From: CCP4 bulletin board [CCP4BB@JISCMAIL.AC.UK] on behalf of Tim Gruene [t...@shelx.uni-ac.gwdg.de] Sent: Wednesday, February 12, 2014 11:18 AM To: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] off-topic Electron density map rendering.. -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Appalling if the program name is not mentioned in the manuscript. Best, Tim On 02/12/2014 03:08 AM, Francis Reyes wrote: Anyone know the program used to render the electron density maps for the fungal FAS in Figure 3c-3h from the paper Mueller, M., Jenni, S. Ban, N. Strategies for crystallization and structure determination of very large macromolecular assemblies. Curr Opin Struct Biol 17, 572-579 (2007).. The depth cueing is phenomenal. I'm thinking O.. I can't seem to get it right in Pymol. Thanks!, F - Francis E. Reyes PhD 215 UCB University of Colorado at Boulder Publications Citations: http://scholar.google.com/citations?user=FW4-CaQJhl=en -- - -- - -- Dr Tim Gruene Institut fuer anorganische Chemie Tammannstr. 4 D-37077 Goettingen GPG Key ID = A46BEE1A -BEGIN PGP SIGNATURE- Version: GnuPG v1.4.12 (GNU/Linux) Comment: Using GnuPG with Icedove - http://www.enigmail.net/ iD8DBQFS+zxcUxlJ7aRr7hoRArIAAJ9FUnn373PWm3uxef4x5LdivxfhBgCfawkH oE12Z6GXrEAAWV2UJKpKDYM= =b53q -END PGP SIGNATURE- -- Dr Jon Agirre York Structural Biology Laboratory / Department of Chemistry University of York, Heslington, YO10 5DD, York, England http://www.york.ac.uk/chemistry/research/ysbl/people/research/jagirre/ +44 (0) 1904 32 8253
[ccp4bb] off-topic Electron density map rendering..
Anyone know the program used to render the electron density maps for the fungal FAS in Figure 3c-3h from the paper Mueller, M., Jenni, S. Ban, N. Strategies for crystallization and structure determination of very large macromolecular assemblies. Curr Opin Struct Biol 17, 572–579 (2007).. The depth cueing is phenomenal. I'm thinking O.. I can't seem to get it right in Pymol. Thanks!, F - Francis E. Reyes PhD 215 UCB University of Colorado at Boulder Publications Citations: http://scholar.google.com/citations?user=FW4-CaQJhl=en --
[ccp4bb] AW: [ccp4bb] off-topic Electron density map rendering..
I would try Coot, setting a very large map radius and adjusting the depth cueing with the d and f keys. My 2 cents, Herman -Ursprüngliche Nachricht- Von: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] Im Auftrag von Francis Reyes Gesendet: Mittwoch, 12. Februar 2014 03:08 An: CCP4BB@JISCMAIL.AC.UK Betreff: [ccp4bb] off-topic Electron density map rendering.. Anyone know the program used to render the electron density maps for the fungal FAS in Figure 3c-3h from the paper Mueller, M., Jenni, S. Ban, N. Strategies for crystallization and structure determination of very large macromolecular assemblies. Curr Opin Struct Biol 17, 572-579 (2007).. The depth cueing is phenomenal. I'm thinking O.. I can't seem to get it right in Pymol. Thanks!, F - Francis E. Reyes PhD 215 UCB University of Colorado at Boulder Publications Citations: http://scholar.google.com/citations?user=FW4-CaQJhl=en --
