Increase the number of allowed clashes in Phaser, re-run it then look at
the packing of the solution found and identify the source of the
clashes. Possibilities for the clash issue include:
1. Wrong space group
2. Flexible loops or termini in search model not present or
differently
I agree that looking at the packing is a good idea, but I also agree that
having the wrong space group is a likely possible explanation. That’s the most
common scenario when there are many clashing solutions with high TFZ scores.
Randy Read
On 17 Jun 2014, at 15:52, Roger Rowlett
