Re: [ccp4bb] quaternary structure comparison

2009-06-16 Thread Eugene Krissinel
Dear Eike, depending on what your structure is - you can try interface search in PISA (google on ebi pisa). Select the most representative interface in your complex (the one that makes the non-standard arrangement) and see whether there are similar interfaces in the PDB. It shouldn't be a too

[ccp4bb] quaternary structure comparison

2009-06-15 Thread Eike - Christian Schulz
Dear All, I solved a structure that has a very common tertiary structure motif but it appears as if the arrangement of the monomers is somewhat Œnon-standart¹. Of course I performed a DALI search, which resulted in a great number of hits due to the similarity of the tertiary structure (Z¹s: 250

Re: [ccp4bb] quaternary structure comparison

2009-06-15 Thread Roberto Steiner
Hi Eike, PISA (http://www.ebi.ac.uk/msd-srv/prot_int/pistart.html) or SCOPPI (http://www.scoppi.org ) might be useful. Interested in hearing about other alternatives. Best wishes Roberto On 15 Jun 2009, at 21:28, Eike - Christian Schulz wrote: Dear All, I solved a structure that has a

Re: [ccp4bb] quaternary structure comparison

2009-06-15 Thread Mark J. van Raaij
The human intelligance system Alexey Murzin of the LMB in Cambridge comes to mind - helpful and knowledgable about all known folds. Mark Quoting Roberto Steiner roberto.stei...@kcl.ac.uk: Hi Eike, PISA (http://www.ebi.ac.uk/msd-srv/prot_int/pistart.html) or SCOPPI (http://www.scoppi.org )