Re: [ccp4bb] writing coordinates of full biomol into one (PDB) file

oers, Ph.D. Associate Professor Department of Biochemistry and Molecular Biology, College of Medicine University of Oklahoma Health Sciences Center From: CCP4 bulletin board [CCP4BB@JISCMAIL.AC.UK] on behalf of Marcin Wojdyr [woj...@gmail.com] Sent: Wednesday,

Re: [ccp4bb] writing coordinates of full biomol into one (PDB) file

another one: gemmi convert --assembly=N input.pdb output.pdb On Wed, 26 May 2021 at 07:30, Frank von Delft wrote: > > Thanks for the quick responses! I was looking for a command-line tool > (should have said). Here's the list: > > 1. phenix.pdb.biomt_reconstruction > 2. Makemultimer.py: http:

Re: [ccp4bb] writing coordinates of full biomol into one (PDB) file

Thanks for the quick responses!  I was looking for a command-line tool (should have said).  Here's the list: 1. phenix.pdb.biomt_reconstruction 2. Makemultimer.py: http://watcut.uwaterloo.ca/tools/makemultimer/docs 3. Quat in pymol: https://p

Re: [ccp4bb] writing coordinates of full biomol into one (PDB) file

Hi Frank, phenix.pdb.biomt_reconstruction command should do it. Pavel On Tue, May 25, 2021 at 12:44 PM Frank von Delft < frank.vonde...@cmd.ox.ac.uk> wrote: > Hello all - this presumably has a really simple solution: > > For a PDB file with a (correct) biomolecular assembly record (REMARK > 350

Re: [ccp4bb] writing coordinates of full biomol into one (PDB) file

On Tue, 2021-05-25 at 20:04 +, Frank Von Delft wrote: > Yes I thought so too, but discovered I am too stupid to decode the highly > parsimonious manual on the ccp4 pages. > The first thing that I'd try (using Coot) is Calculate -> PISA -> Assemblies... #

Re: [ccp4bb] writing coordinates of full biomol into one (PDB) file

hat's a well >> defined problem...? >> >> >> >> Sent from tiny silly touch screen <http://www.9folders.com/> >> -- >> *From:* Debanu Das >> *Sent:* Tuesday, 25 May 2021 20:55 >> *To:* Frank Von Delft >>

Re: [ccp4bb] writing coordinates of full biomol into one (PDB) file

21 20:55 > *To:* Frank Von Delft > *Cc:* CCP4BB@JISCMAIL.AC.UK > *Subject:* Re: [ccp4bb] writing coordinates of full biomol into one (PDB) > file > > Hi Frank, > PISA is your friend here. > Thanks, > Debanu > > On Tue, May 25, 2021 at 12:44 PM Frank von Delft < > frank.vonde

Re: [ccp4bb] writing coordinates of full biomol into one (PDB) file

ders.com/> From: Debanu Das Sent: Tuesday, 25 May 2021 20:55 To: Frank Von Delft Cc: CCP4BB@JISCMAIL.AC.UK Subject: Re: [ccp4bb] writing coordinates of full biomol into one (PDB) file Hi Frank, PISA is your friend here. Thanks, Debanu On Tue, May 25, 2021 at 12:44 PM Fran

Re: [ccp4bb] writing coordinates of full biomol into one (PDB) file

Hi Frank, PISA is your friend here. Thanks, Debanu On Tue, May 25, 2021 at 12:44 PM Frank von Delft < frank.vonde...@cmd.ox.ac.uk> wrote: > Hello all - this presumably has a really simple solution: > > For a PDB file with a (correct) biomolecular assembly record (REMARK > 350), what program do I

[ccp4bb] writing coordinates of full biomol into one (PDB) file

Hello all - this presumably has a really simple solution: For a PDB file with a (correct) biomolecular assembly record (REMARK 350), what program do I use to generate and write out the coordinates of the biomolecular assembly (or one of them). Thanks Frank ###