Hi Engin,
Two thoughts:
* Is the Patterson map consistent ? (with different resolution ranges,
exclusions, ...). You could possibly give 'GraphEnt' a try [assuming it
still works with current generation mtz files].
* The number of heavy atoms may be much larger and may deviate from
the
In the past month there have been several postings to the BB with large
(100kB or more) attachments. Can I remind subscribers that it is our
policy to discourage attachments as, amongst other things, they can
cause mailboxes to fill at an alarming rate. A link to a website
carrying the data which
while we're on this topic, it would be nice also if messages were sent
in plain text, not as html (like yours, Norman :-)), particularly as
these ones generally come out in a tiny font in my (Apple) mail
reader, for some reason
Phil
On 15 Sep 2009, at 09:45, Stein, Norman (STFC,DL,CSE)
Phil
I had this same problem a while ago, if you recall. Modern e-mail
clients sending a message in HTML format will almost certainly send it
in 2 parts, the first a version converted to plain text and the second
the original HTML version (and possibly other versions of the same
message). This
There are two problems, I think
1. Sending a simple mail like this in anything other than plain text
is wasteful, and also enforces the sender's way of displaying it on
the reader, rather than following the reader's preference.
(That may of course be appropriate in some cases where
=3D is the escaped =
=xx were is the hex code of any 8bit char
Am 15.09.2009 11:46, schrieb Phil Evans:
There are two problems, I think
1. Sending a simple mail like this in anything other than plain text
is wasteful, and also enforces the sender's way of displaying it on
the reader, rather
Phil
Nothing at all wrong with plain text for simple messages as you say, but
if you want to communicate a complicated equation (particularly one
containing a lot of Greek letters and math symbols not in the standard
ASCII set!) the HTML version is much cleaner and easier to understand.
Obviously
Hi
Apple mail (which is what I think Phil uses) is a bit of a nuisance -
there is no menu option to display plain text by default, apparently
(IMWBW) - you have the option to view the current message in plain
text, but you have to do this on a message-by-message basis.
There is a
Thanks for that - it works!
Phil
On 15 Sep 2009, at 11:43, Harry Powell wrote:
Hi
Apple mail (which is what I think Phil uses) is a bit of a nuisance
- there is no menu option to display plain text by default,
apparently (IMWBW) - you have the option to view the current message
in
On 15 Sep 2009, at 11:24, Ian Tickle wrote:
Phil
Nothing at all wrong with plain text for simple messages as you say,
but
if you want to communicate a complicated equation (particularly one
containing a lot of Greek letters and math symbols not in the standard
ASCII set!) the HTML version
I suppose I also don't understand why people composing html messages
would select a tiny font size, or is that a function of the Mail
reader rather than the writer (which would seem to defeat the purpose
of the writer formatting the message)?
Assuming your mail reader has correctly
Take two siliconised glass cover slips. Place 2-5ul of mother liquor on one and
transfer a single crystal to this solution. Place the other cover slip on top
and press down. The two optically flat surfaces crush the crystal (best
observed using a microscope). Slide the two cover slips apart and
On Sep 15, 2009, at 3:43 AM, Harry Powell wrote:
I googled and found something about editing ~/Library/Preferences/
com.apple.mail.plist (double click on the icon, don't try with emacs
or vi...)and adding the following to the start of the first
dictionary:-
keyPreferPlainText/key
true/
On Sep 15, 2009, at 5:07 AM, Ian Tickle wrote:
it doesn't provide full equation formatting capabilities,
as in LaTeX for example, but at least one can type or paste in
equations
jsMath provides a convenient and easy-to-use way to embed and render
LaTeX in HTML:
On Tuesday 15 September 2009, Ian Tickle wrote:
Yes, obviously it doesn't provide full equation formatting capabilities,
as in LaTeX for example, but at least one can type or paste in equations
containing for example the Greek 'sigma' character (upper or lower case
of course) or the 'square
Why do you say that?
Typing non-ascii text is the same process whether it's wrapped in HTML or
not.
Here's your sigma: ∑
My e-mail client only allows me to insert non-ASCII characters into HTML (or
RTF), not plain text: the option to insert symbols is greyed out in plain text
mode. If I
You can always make your own 'seed-bead' using a French Press nylon ball
(1/8) and an eppendorf.
Or in the absence of French Press consumables suppliers, just find your
local industrial gadget supplier (I found Dejay Distribution Ltd in the
UK via google). They quoted me £4.45 for 100 x 1/8 nylon
-Original Message-
From: owner-ccp...@jiscmail.ac.uk [mailto:owner-ccp...@jiscmail.ac.uk]
On
Behalf Of William G. Scott
Sent: 15 September 2009 15:15
To: Ian Tickle
Cc: CCP4BB@jiscmail.ac.uk
Subject: Re: [ccp4bb] attachments
jsMath provides a convenient and easy-to-use way to
Hi!
On Pet, rujan 11, 2009 15:37, sajid akthar wrote:
I have some density and I can fit a peg molecule in their. I am confused
and when I search database for peg3350, I have no hit. How can I build a
model for Peg 3350. I found some PDB's with peg; but they they have used
peg400; Is there any
Dear All,
I would like to prepare a plot showing the b-factor of only the alpha
carbon and/or the backbone atoms and I wonder if somebody knows a module
or software that I can use, I tried the structure analysis/Temperature
factor analysis module in CCP4 but it plots the average b-factor of all
Dear Mohd,
to plot the B-factors, I would read the pdb file in Excel (or similar).
Take care that 5.45 is read as a number and not as a string, which
happens at least in German versions because of the . instead of the
German,.
Specify the decimal separator.
The sort by Atmon name to get all
Hi Mohd,
here is how using PHENIX tools:
Step 1:
phenix.pdbtools model.pdb keep=backbone
Step 2:
phenix.pdbtools model_backbone_only.pdb --show-adp-statistics
Please let me know if you have questions about the above tools.
Pavel.
On 9/15/09 9:37 AM, Salameh, Mohd A., Ph.D. wrote:
Dear
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Assistant Professor in the Department of Biochemistry and Cell Biology in
the area of structural biology/biochemistry starting Fall 2010. Stony
Brook's proximity and
Dear Colleagues:
We are delighted to announce that the 5th International Conference on
Structural Analysis of Supramolecular Assemblies by Hybrid Methods will be held
from March 10-14, 2010 in Lake Tahoe, California at the Granlibakken Conference
Center. We invite you to visit our Symposium
Dear All;
In response to my Anisotropic Diffraction In Refinement, which asked
for suggestions for how best to proceed with refinement with an
anisotropic data set, I received a large number of responses which
overwhelmingly suggested using the UCLA Anisotropy Server
Hi everyone,
I have two conditions that I want to try and improve by microseeding. I have
been reading the literature on the subject and am a bit confused as to what
exactly is the stabilizing mother liquor that is used in the serial dilution
of the seed stock. Is this just purified protein
Hi Salameh,
Not sure if you mean a graph of B-factor vs sequence, or a 3D structure
plot.
Either way you can get such a plot using aline
http://crystal.bcs.uwa.edu.au/px/charlie/software/aline/ which can
produce a sequence alignment (or single sequence) coloured by B-factor
(CA, Main, Side
Stabilizing mother liquor is anything that (hopefully) will keep your seeds
'competent' (capable of nucleating single crystals). This may be anything
but typically what people start with is something on the lines of the well
solution supplemented perhaps with a bit extra precipitant.
As to
This is why phenix.refine by default outputs both maps: 2mFo-DFc
filled and not filled, and it is the best to look at both keeping in
mind all pros and cons of each of them.
Pavel.
On 9/15/09 5:22 PM, Peter Zwart wrote:
Application of a elliptical resolution boundary is justified because
On Sep 15, 2009, at 4:43 PM, José Trincão wrote:
Hello all,
I upgraded my Macbook Pro to snow leopard and followed William G.
Scotts Crystallography on OSX wiki to install CCP4 using Fink. I
used the 64bit install with full compilation, not the pre-compiled
binaries. When I start ccp4i I
On Sep 15, 2009, at 4:43 PM, José Trincão wrote:
Hello all,
I upgraded my Macbook Pro to snow leopard and followed William G.
Scotts Crystallography on OSX wiki to install CCP4 using Fink. I
used the 64bit install with full compilation, not the pre-compiled
binaries. When I start ccp4i I
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