Re: [ccp4bb] cluster Ta6Br12 in phaser

2013-06-27 Thread Tim Gruene
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Dear Kevin, the phaser developers would probably give you a precise answer. In the meantime I would debug this by setting each of the three occurances of TX to UX (or anything else), one after the other, to check which of them is misinterpreted.

[ccp4bb] PDBe Quips: transformer proteins - the science, not the fiction

2013-06-27 Thread Gary Battle
PDBe Quips: transformer proteins - the science, not the fiction. The bacterial transcription factor RfaH has been shown to undergo extreme conformational transformation. It is able to switch between two completely different secondary and tertiary structures, each with a specific

Re: [ccp4bb] Supplier for X-ray sensitive paper

2013-06-27 Thread Oliver Bunk
Hi Joe, What is known as 'green paper' and some of the 'burn paper' variants used to be 'Green Detex' from Sessions of York -- and this is to the best of my knowledge not produced anymore. Green Detex was paper with UV sensitive coating for calibrating UV lamps. It works to use other UV

[ccp4bb] Job Posting: Technical Key Account Managers (3 positions) at Microlytic

2013-06-27 Thread Melanie Adams-Cioaba
*Technical Key Account Managers - 3 positions currently available* To meet increasing customer demand Microlytic is hiring individuals with a strong scientific background for serving our growing base of large academic and industrial accounts in the USA. The technical key account managers will be

[ccp4bb] Fwd: Job Posting: Technical Key Account Managers (3 positions) at Microlytic

2013-06-27 Thread Melanie Adams-Cioaba
*Technical Key Account Managers - 3 positions currently available* To meet increasing customer demand Microlytic is hiring individuals with a strong scientific background for serving our growing base of large academic and industrial accounts in the USA. The technical key account managers will be

Re: [ccp4bb] Rfree is 20%,why still green and red density?

2013-06-27 Thread James Holton
I disagree with Herman that 3 sigma features are nothing to worry about. Indeed, I think this is one of the deepest and most disturbing problems with macromolecular crystallography in general. Why can't we explain our data to within experimental error? If you think all the green and red

Re: [ccp4bb] ctruncate bug?

2013-06-27 Thread Ian Tickle
On 22 June 2013 19:39, Douglas Theobald dtheob...@brandeis.edu wrote: So I'm no detector expert by any means, but I have been assured by those who are that there are non-Poissonian sources of noise --- I believe mostly in the readout, when photon counts get amplified. Of course this will

[ccp4bb] REFMAC5 and read-only file systems

2013-06-27 Thread Ben Eisenbraun
Howdy Y'all, I have a lab where REFMAC jobs are blowing up trying to access the monomers database. The logfile looks like this: Open failed: Unit: 7, File: /programs/x86_64-linux/ccp4/6.3.0/ccp4-6.3.0/lib/data/monomers/list/mon_lib_list.cif (logical:

Re: [ccp4bb] AW: [ccp4bb] insertion code problem

2013-06-27 Thread Ian Tickle
Last time I checked pdbset doesn't renumber the LINK, CISPEP, SSBOND records at the same time (but maybe it was fixed). -- Ian On 26 June 2013 07:41, Francois Berenger beren...@riken.jp wrote: I think pdbset from CCP4 can renumber a PDB and hence get rid of the uggly insertion codes. On

Re: [ccp4bb] REFMAC5 and read-only file systems

2013-06-27 Thread Paul Emsley
On 06/27/2013 05:34 PM, Ben Eisenbraun wrote: Howdy Y'all, Howdy. It looks like REFMAC is trying to open $CLIBD_MON/list/mon_lib_list.cif read-write and then read-only, Yes, it does... curious. In libcheck.f's WRT_LIB_LIST_NEW_STYLE, should be OPENFR(), I imagine. but with the flag

[ccp4bb] Postdoctoral Researcher, Membrane Structural and Functional Biology, Caffrey Lab, Trinity College Dublin, Ireland

2013-06-27 Thread Martin Caffrey
Postdoctoral Research Fellow Membrane Structural and Functional Biology – Caffrey Lab Trinity College Dublin, Ireland Post Summary Applications for the post of Postdoctoral Research Fellow in the Membrane Structural and Functional Biology Research Group are invited. The major theme

Re: [ccp4bb] AW: [ccp4bb] insertion code problem

2013-06-27 Thread MAGGIE
Thank you, guys. My problem has been solved. AutoMR in CCP4 removed the insertion code. But I used it before, and it did not mess up with the insertion code at those times. Rain On Thu, Jun 27, 2013 at 12:56 PM, Ian Tickle ianj...@gmail.com wrote: Last time I checked pdbset doesn't

Re: [ccp4bb] R too low?

2013-06-27 Thread Roberts, Sue A - (suer)
Hello Everone, Thanks for all the help. The key to finding the problem was following up on Tim Gruene's suggestion to compare the data sets directly. It appears that an error occurred during conversion from I to F - until I find the log file for the conversion, I can't guess what was done.