Re: [ccp4bb] Refmac problem: Validation and Analysis

2024-04-05 Thread Jon Agirre
Dear Marian, Thanks for your report. I'm sorry you're having to deal with this problem. There is nothing wrong with your machine; this is an identified bug and we're working towards fixing it. In the meantime, the only workaround I can think of is to roll CCP4 back to a previous update, e.g. 015.

[ccp4bb] Refmac problem: Validation and Analysis

2024-04-05 Thread Marian Oliva
Dear list, I have a problem running the Validation and Analysis in Refmac and I would really appreciate any feed-back from your side. I am using CCP4i2 (CCP4-8.0.018 locally running in Ubuntu 20.04.4). Last time I was using Refmac was in November 2023. At the time, I posted in the list an

[ccp4bb] Instruct-ERIC Structure Meets Function Webinar 32

2024-04-05 Thread ccp4mail
Register now for the 32nd edition of the Instruct-ERIC Structure Meets Function webinar series, taking place on Zoom, 17 April at 11:00 CEST. Register

Re: [ccp4bb] Resolution discrepancy between MTZ file and Refinement

2024-04-05 Thread venkatareddy dadireddy
Hi Kay and Garib, Thank you for your input. It is actually the twin refinement that gave rise to resolution discrepancy. For what reason I don't remember that I have turned the twin refinement ON and the same job was cloned again and again. With the twin refinement OFF, it gave rise to resolution

[ccp4bb] Register Now for a Virtual Deep Dive into Computed Structure Model Exploration at RCSB.org

2024-04-05 Thread Christine Zardecki
Join us as we demonstrate how RCSB.org serves as your gateway to structural data exploration on Tuesday April 30, 2024 from noon-1pm Eastern, 9-10am Pacific This event will equip you with the knowledge of how to use RCSB.org features to navigate 3D predicted protein structures in the context of

Re: [ccp4bb] Resolution discrepancy between MTZ file and Refinement

2024-04-05 Thread Garib Murshudov
Unless you are confident that twin exists you should not use twin refinement (Occam’s razor) > On 5 Apr 2024, at 17:24, venkatareddy dadireddy wrote: > > CAUTION: This email originated from outside of the LMB: > .-owner-ccp...@jiscmail.ac.uk -. > Do not

Re: [ccp4bb] Resolution discrepancy between MTZ file and Refinement

2024-04-05 Thread venkatareddy dadireddy
Thank you very much Garib. Venkat On Sat, Apr 6, 2024 at 1:12 AM Garib Murshudov wrote: > Unless you are confident that twin exists you should not use twin > refinement (Occam’s razor) > > > > On 5 Apr 2024, at 17:24, venkatareddy dadireddy > wrote: > > CAUTION: This email originated from

[ccp4bb] postdoc position in Vancouver - cryo-EM analysis of bioelectricity complexes

2024-04-05 Thread Filip Van Petegem
Dear colleagues, A postdoctoral position is available to work on the problem of coupling between different ion channels in electrically excitable tissues. https://www.vanpetegemlab.com/opportunities.html The project entails cryo-EM, electrophysiology and protein biophysics, and will make use of