Re: [ccp4bb] Off topic: Crystallization screening robot

2013-09-04 Thread Demetres D. Leonidas
. Best, Jinyi -- --- Dr. Demetres D. Leonidas Associate Professor of Biochemistry Department of Biochemistry Biotechnology University of Thessaly 26 Ploutonos Str. 41221 Larissa, Greece - Tel. +302410

Re: [ccp4bb] X-ray pattern has streaks

2013-10-03 Thread Demetres D. Leonidas
for the streaking. The streaks are many wide spread and there are no high resolution spots or streaks as we might expect in salt crystals. -- --- Dr. Demetres D. Leonidas Associate Professor of Biochemistry Department of Biochemistry Biotechnology University

[ccp4bb] Postdoctoral Position in synthesis of glucopyranonucleosides

2012-06-21 Thread Demetres D. Leonidas
Dear all, please follow the link http://www.hecra.gr/vacancies/21_6.pdf for a posdoctoral position in Organic Synthesis at the Department of Biochemistry and Biotechnology, University of Thessaly. Demetres -- --- Dr. Demetres D. Leonidas

Re: [ccp4bb] Somewhat OT: question of professional courtesy

2012-07-25 Thread Demetres D. Leonidas
! Evette Evette S. Radisky, Ph.D. Assistant Professor Mayo Clinic Cancer Center Griffin Cancer Research Building, Rm 310 4500 San Pablo Road Jacksonville, FL 32224 (904) 953-6372 -- --- Dr. Demetres D. Leonidas Associate Professor of Biochemistry

[ccp4bb] Unusually low B factors with phenix

2012-11-02 Thread Demetres D. Leonidas
optimization of the X-ray/ADP weight. Has anyone else noticed that and is there a workaround ? Demetres -- --- Dr. Demetres D. Leonidas Associate Professor of Biochemistry Department of Biochemistry Biotechnology University of Thessaly 26 Ploutonos Str

Re: [ccp4bb] Unusually low B factors with phenix

2012-11-02 Thread Demetres D. Leonidas
, Demetres D. Leonidas wrote: Hello, I am experiencing a weird problem with B factor refinement (individual, isotropic) in phenix.refine (1.8.1.-1168) and a structure at 1.9 A resolution. The ADP values after the refinement are very very low, less than 2 and sometimes 0. I am getting the same result

[ccp4bb] Post-Doctoral position in Molecular Biology

2012-11-25 Thread Demetres D. Leonidas
). -- --- Dr. Demetres D. Leonidas Associate Professor of Biochemistry Department of Biochemistry Biotechnology University of Thessaly 26 Ploutonos Str. 41221 Larissa, Greece - Tel. +302410 565278 Tel. +302410 565297 (Lab) Fax. +302410 565290 E-mail

Re: [ccp4bb] a challenge

2013-01-13 Thread Demetres D. Leonidas
-- --- Dr. Demetres D. Leonidas Associate Professor of Biochemistry Department of Biochemistry Biotechnology University of Thessaly 26 Ploutonos Str. 41221 Larissa, Greece - Tel. +302410 565278 Tel. +302410 565297 (Lab) Fax

Re: [ccp4bb] Twinning in C2 ?

2007-07-13 Thread Demetres D. Leonidas
translation vector in the mutant form.. Or what the data analysis graphs from TRUNCATE show - are they normal? Eleanor Demetres D. Leonidas wrote: Dear all, we have encountered a problem in solving one mutant structure. The mutant protein crystallizes in the same space group as the native (C2

Re: [ccp4bb] Twinning in C2 ?

2007-07-18 Thread Demetres D. Leonidas
- is that feasible? I think I would generate P1 data Demetres D. Leonidas wrote: Dear Eleanor, Yes the native is a dimer and we did the search using the dimer as a model but we had similar results (i.e. all programs find one molecule). The graphs from TRUNCATE show rather normal and I am

[ccp4bb] Postdoc protein crystallographer in Greece

2007-08-30 Thread Demetres D. Leonidas
by an EC grant. Please send a preliminary request with a CV and a summary of research experience and interests to Prof. Socrates Tzartos, emails: [EMAIL PROTECTED] and [EMAIL PROTECTED] -- Demetres D. Leonidas, Ph.D. Structural Biology Chemistry Group Institute of Organic and Pharmaceutical Chemistry

[ccp4bb] Postdoc protein crystallographer in Greece

2007-08-30 Thread Demetres D. Leonidas
by an EC grant. Please send a preliminary request with a CV and a summary of research experience and interests to Prof. Socrates Tzartos, emails: [EMAIL PROTECTED] and [EMAIL PROTECTED] -- Demetres D. Leonidas, Ph.D. Structural Biology Chemistry Group Institute of Organic and Pharmaceutical Chemistry

Re: [ccp4bb] crystallisation robot

2008-01-16 Thread Demetres D. Leonidas
wash whilst still on the machine will clear the blockage. Dave -- David C. Briggs PhD Father Crystallographer http://www.dbriggs.talktalk.net http://www.dbriggs.talktalk.net AIM ID: dbassophile -- Demetres D. Leonidas, Ph.D

Re: [ccp4bb] crystallization incubators

2008-06-23 Thread Demetres D. Leonidas
Kalman Dock 415 South St. Waltham, MA 02454 USA -- Demetres D. Leonidas, Ph.D. Structural Biology Chemistry Group Institute of Organic and Pharmaceutical Chemistry The National Hellenic Research Foundation 48, Vassileos Constantinou Avenue Athens 116 35, Greece

[ccp4bb] ccp4mg doesn't start in windows error in startup script

2008-07-21 Thread Demetres D. Leonidas
this ? Demetres -- Demetres D. Leonidas, Ph.D. Structural Biology Chemistry Group Institute of Organic and Pharmaceutical Chemistry The National Hellenic Research Foundation 48, Vassileos Constantinou Avenue Athens 116 35, Greece == Tel. +30 210 7273841 (office

[ccp4bb] Nikos Oikonomakos

2008-08-31 Thread Demetres D. Leonidas
Dear all, it is with great sadness that we announce the passing of Nikos Oikonomakos yesterday. Nikos was a dear friend, a passionate researcher and an innovative teacher. We will all miss him . -- Dr. Demetres D. Leonidas

[ccp4bb] Marie Curie Fellowship

2009-02-06 Thread Demetres D. Leonidas
in the handbook at: http://ec.europa.eu/research/fp6/mariecurie-actions/action/stage_en.html Applications should be e-mailed to Dr. MN Alexis (mnale...@eie.gr) till 1st of March 2009 and should include a full CV and the names and addresses of 1-2 referees. -- Demetres D. Leonidas, Ph.D. Senior

Re: [ccp4bb] Devices Suitable to Concentrate Protein Solutions in Liter Scale

2009-09-03 Thread Demetres D. Leonidas
(typically 2~4 litters). It was problematic when I wanted to concentrate the solution to at least less than 500ml. If you know any device appropriate for such task, please help me out:) Thanks in advance! Sincerely, Xuan Yang -- Demetres D. Leonidas, Ph.D. Senior Researcher Structural

[ccp4bb] Postdoctoral research position

2017-11-14 Thread Demetres D. Leonidas
genomics studies. His/her research could also lead to a PhD. Curriculum Vitae, a brief letter describing interests and prior experience and names of three references should be sent to: kmath...@bio.uth.gr. -- --- Dr. Demetres D. Leonidas Professor

[ccp4bb] CCP4Mg problems

2021-09-27 Thread Demetres D. Leonidas
I checked and such a file does not exist but I thought it will be created automatically once you run the program. Any ideas ? Demetres -- --- Dr. Demetres D. Leonidas Professor in Biochemistry Department of Biochemistry & Biotechnology University of Thessaly

Re: [ccp4bb] CCP4Mg problems

2021-09-27 Thread Demetres D. Leonidas
ng else happen after that message? One way to possibly help is to run it as follows: ccp4mg -noredirect This way all messages should be sent to the terminal output and we might see something more helpful. Sorry for your difficulties, Stuart On Mon, 27 Sept 2021 at 13:24, Demetres D. Leonidas mailto:d