Re: [ccp4bb] AW: [ccp4bb] insertion code problem

2013-06-27 Thread Ian Tickle
Last time I checked pdbset doesn't renumber the LINK, CISPEP, SSBOND records at the same time (but maybe it was fixed). -- Ian On 26 June 2013 07:41, Francois Berenger beren...@riken.jp wrote: I think pdbset from CCP4 can renumber a PDB and hence get rid of the uggly insertion codes. On

Re: [ccp4bb] AW: [ccp4bb] insertion code problem

2013-06-27 Thread MAGGIE
Thank you, guys. My problem has been solved. AutoMR in CCP4 removed the insertion code. But I used it before, and it did not mess up with the insertion code at those times. Rain On Thu, Jun 27, 2013 at 12:56 PM, Ian Tickle ianj...@gmail.com wrote: Last time I checked pdbset doesn't

[ccp4bb] AW: [ccp4bb] insertion code problem

2013-06-26 Thread Herman . Schreuder
Dear Rain, Insertion codes are still a sore point for many CCP4 programs and one of the reasons I prefer Buster over Refmac. Refmac5 does not remove insertion codes so I suspect the problem was with autoMR. The easiest is to superimpose your search model with insertion codes onto the pdb file

Re: [ccp4bb] AW: [ccp4bb] insertion code problem

2013-06-26 Thread Francois Berenger
I think pdbset from CCP4 can renumber a PDB and hence get rid of the uggly insertion codes. On 06/26/2013 03:33 PM, herman.schreu...@sanofi.com wrote: Dear Rain, Insertion codes are still a sore point for many CCP4 programs and one of the reasons I prefer Buster over Refmac. Refmac5 does not

[ccp4bb] AW: [ccp4bb] AW: [ccp4bb] insertion code problem

2013-06-26 Thread Herman . Schreuder
-Ursprüngliche Nachricht- Von: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] Im Auftrag von Francois Berenger Gesendet: Mittwoch, 26. Juni 2013 08:42 An: CCP4BB@JISCMAIL.AC.UK Betreff: Re: [ccp4bb] AW: [ccp4bb] insertion code problem I think pdbset from CCP4 can renumber a PDB and hence get