Re: [ccp4bb] JLigand: Handedness related issue

2011-07-21 Thread Christian Roth
Hi Vineet, I did not used JLIGAND so far, so I cannot explain what happend, but maybe the quickest solution would be a manual intervention in the cif-files. Type at at the chirality remark "positiv or negativ" or whatever nomenclature is used and save it again. I do it sometimes for my ligands

[ccp4bb] JLigand: Handedness related issue

2011-07-21 Thread Vineet Gaur
Dear all, I am trying to generate a cif file for a new ligand (a sugar derivative) using "JLigand". The ligand needs to be in D- configuration. However, after I input the coordinates for this ligand into J ligand and carry out geometry regularisation, the program automatically converts D configura

[ccp4bb] JLigand: Handedness related issue

2011-07-21 Thread Vineet Gaur
Dear all, I am trying to generate a cif file for a new ligand (a sugar derivative) using "JLigand". The ligand needs to be in D- configuration. However, after I input the coordinates for this ligand into J ligand and carry out geometry regularisation, the program automatically converts D configurat