Hi, I had this problem with Yosemite. Clicking on the icon still doesn’t open the program, but I can start it using the sh command in XQuartz.. I’m not sure if there was something else I had to do in order for this to work (it’s been a while since I started using it like this), but perhaps just try it.
Cheers, Freia > On 11 Apr 2017, at 00:57, Peter Hsu <hsuu...@u.washington.edu> wrote: > > Hi all, > > Sorry for the very off topic message, but I recently upgraded my OS to Sierra > and all of a sudden MacPymol has stopped working for me. Clicking on the > program just gives the appearance of it about to start by showing the icon on > the dock, and then just blinks out, without ever starting. My xcode and > xquartz is up to date, so I'm not sure where the problem is. Any help is much > appreciated! > > Thanks, > Peter