Re: [ccp4bb] resolution and solvent accessible surface area

2007-07-24 Thread Miguel Ortiz-Lombardía
Hello Hyunchul Kim, I found this paper very interesting: Novotny M, Seibert M, Kleywegt GJ. On the precision of calculated solvent-accessible surface areas. Acta Crystallogr D Biol Crystallogr. 2007 Feb;63(Pt 2):270-4. Epub 2007 Jan 16. PMID: 17242521 [PubMed - indexed for MEDLINE]

Re: [ccp4bb] resolution and solvent accessible surface area

2007-07-24 Thread Hyunchul Kim
Hello Miguel, Thank you for your reply. It's related to the total SASA of a protein structure but not that of per residue. However, it still give me a hint. :) Best, Hyunchul Kim On Tue, 2007-07-24 at 08:12 +0200, Miguel Ortiz-Lombardía wrote: Hello Hyunchul Kim, I found this paper very

Re: [ccp4bb] resolution and solvent accessible surface area

2007-07-24 Thread Curious George
Hi Hyunchul Kim, the paper that Miguel quotes concludes that the ASA doesn't show any correlation with resolution, but i would like to respectfully disagree. In the paper, the authors limit themselves to structures determined at a resolution no lower than 2.3 A. Many complex structures though

Re: [ccp4bb] resolution and solvent accessible surface area

2007-07-24 Thread Marian Novotny
Hi Rob, Hyunchul Kim and Miguel, I was just about to write a comment on this, but Rob was quicker.. Rob is right, our dataset of hen egg-white lysozymes does not contain any structures with resolution lower than 2.3 Aone may say that these are all relatively high-resolution structures,