There isn't a utility function but it's quite simple. Get the fragments as
you are already doing, then for each fragment delete all the the cyclic
bonds. In practise it's more efficient to build a new molecule and only
include the acyclic bonds.
Code:
Hello,
i'm new to mailinglists so i'm not sure if my first mail is received.
I wrote a class which uses the murckofragmenter to create fragments of
molecules. Now I need the possibility to get the chain between to
ringsystems as fragment.
Is it possible to realize it with the murckofragmenter or
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