I believe so, if you gave it methane as '[H]C([H])([H])[H]' it would only
show C (or maybe CH4).
J
Regards,
John W May
john.wilkinson...@gmail.com
On 26 January 2016 at 20:50, Tim Dudgeon wrote:
> OK, so making more sense to me now.
> But what does this option do:
>
>
When I try to use the low level DepictionGenerator.withParam(Class,
U) method to set a parameter depiction blows up.
e.g. I try:
withParam(BasicAtomGenerator.ShowExplicitHydrogens.class, true)
and then try to depict I get:
java.lang.IllegalAccessError: You requested the active parameter of
There are about three different generators which have separate parameters -
the depiction generator is intended to hide this, here the withParam is
really an expert mode... I should give a better error message though. The
depiction generator uses the StandardGenerator and and BasicSceneGenerator
So this means that options like this can't be used with DepictionGenerator?
On 26/01/2016 14:53, John M wrote:
There are about three different generators which have separate
parameters - the depiction generator is intended to hide this, here
the withParam is really an expert mode... I should
Yep - I'll add a better error message to reflect this.
Regards,
John W May
john.wilkinson...@gmail.com
On 26 January 2016 at 16:03, Tim Dudgeon wrote:
> So this means that options like this can't be used with DepictionGenerator?
>
>
> On 26/01/2016 14:53, John M wrote:
>
Sorry bit confused here.. hydrogens are always shown especially with
explicit.
J
http://cdkdepict-openchem.rhcloud.com/depict/bow/svg?smi=%5BN%5D1C%3DCC%3DC1.%5BNH%5D1C%3DCC%3DC1.%5BH%5DN1C%3DCC%3DC1=1.3=none
Regards,
John W May
john.wilkinson...@gmail.com
On 26 January 2016 at 17:29, Tim
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