Hi All,
Lots of the ReactionManipulator methods don't consider agents. Guessing
they may have been written before an API change.
Is there any objection to me updating the semantics such that
getAllMolecules and getAtomCount etc don't ignore agents?
Example of current implementations:
https://github.com/cdk/cdk/blob/master/base/standard/src/main/java/org/openscience/cdk/tools/manipulator/ReactionManipulator.java#L57
Cheers
J
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