Re: [Cdk-user] Reaction depiction

2016-03-06 Thread Scooter Morris
Hi John, Thanks for the response. My IDrawVisitor is at: https://github.com/RBVI/chemViz2/blob/master/src/main/java/edu/ucsf/rbvi/chemViz2/internal/view/PaintedShapeVisitor.java and it returns a list of shapes that I can use with Cytoscape's custom graphics, which is the only thing I can

Re: [Cdk-user] Reaction depiction

2016-03-05 Thread John M
On 5 March 2016 at 09:51, John M wrote: > will be bundled *will be bundled in future but at the moment you need to include it explicitly Regards, John W May john.wilkinson...@gmail.com --

Re: [Cdk-user] Reaction depiction

2016-03-05 Thread John M
Hi Scooter, This is now much easier, for most use-cases you use the new DepictionGenerator abstract (module cdk-depict will be bundled but needs to be load separately). Lots of tweaks you can do