Knew it was the JAR packaging, I did try to send the JAR file I has working
in debain-slim but Gmail blocks JAR attachments.
Interestingly I stopped using SpringBoot (for another reason I can't
remember) a few years ago and use the TomCat (exec-war) plugin instead.
Jetty also has a plugin which is
Oh, very happy to hear that! Are you going to put it up on DockerHub?
Egon
On Thu, Sep 13, 2018 at 10:42 PM Maria Sorokina
wrote:
> I managed to make my app function.
>
> The problem comes from the way a Spring Boot application packages the jar
> - internally, the jar is different from plain ol
I managed to make my app function.
The problem comes from the way a Spring Boot application packages the jar -
internally, the jar is different from plain old Java, so the deployment of
artefacts is also different. The Jnati library that allows the wrapping of the
InChi factory is not adapted t
Do you have a different machine to test on? Could also be a factor, alpine
gave me a segfault (see attached) but slim works OK.
[john@toaster jni-inchi-docker]$ more Dockerfile
> FROM openjdk:8u171-slim
> COPY smi2inchi.jar .
John
On Tue, 11 Sep 2018 at 16:23, John Mayfield
wrote:
> I'll have
I'll have a poke around in an alpine container this evening, does seem odd.
A third option is nested-vm version, we used this in JChemPaint when it was
an Applet - (see inchi-nestedvm in https://github.com/JChemPaint/jchempaint
).
On Tue, 11 Sep 2018 at 16:03, Maria Sorokina
wrote:
> I am build
I am building my jar with Maven, but I don’t think that it is the problem, as I
tried tu run the jar on a Centos7 VM having just Java and it worked without any
problem.
I also desperately tried the dirty solution of downloading the manifest and the
jniinchi-1.03_1-LINUX-AMD64.so files the ini-in
Right, alpine was probably a red herring. Looking again I presume you build
app.jar yourself? It looks like you've removed the MANIFEST.xml that is
needed by JNI InChI to locate the native dependency. How are you building
the JAR?
Unfortunately v1.03 of InChI is all we have for JNI ATM. My former
I tried the ubuntu 16.04 based image with Java 8 added, I get exactly the same
error, only at the InChi generation. I have the feeling that something is
missing in this minimal linux images for the InChi generator to run correctly,
but I cannot find what.
I also noticed that for an old version
Unlikely to work in alpine, have you tried ubuntu/debian slim?
John
On Mon, 10 Sep 2018 at 18:16, Maria Sorokina
wrote:
> Hi,
>
> I developed an app using CDK, and in particular it’s InChi Generator. It
> runs perfectly with IntelliJ, and as a jar on MacOS and on CentOS. I wanted
> to make it r
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