I observed the same behavior as this.. http://sourceforge.net/p/cdk/bugs/1197/
public static String iAtomContainerListToSDFString(List<IAtomContainer>
mfSDF) throws FileNotFoundException, CDKException, IOException
{
StringWriter sw = new StringWriter();
BufferedWriter bw = new BufferedWriter(sw,2);
SDFWriter sdfW = new SDFWriter(bw);
for (IAtomContainer ia : mfSDF)
{
sdfW.write(ia);
}
String sdfString = sw.toString();
sw.close();
bw.close();
sdfW.close();
System.out.println(sdfString);
return sdfString;
}
This works, but if I use StringWriter without BufferedWriter it doesn't work.
Also, If I use a large buffer size, the sdfString is either empty or without
properties.
I am using CDK 1.4.19 ------------------------------------------------------------------------------
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