Re: [cellml-discussion] Using CellML to represent huge CellML models:Has anyone worked on this already?

2007-04-23 Thread David Nickerson
I am working on developing a CellML model (using external code) of transcriptional control in yeast which is 23 MB in size. I hope to eventually do a similar thing for organisms which have much more complicated sets of interactions, in which case this size may grow substantially. so you

Re: [cellml-discussion] Using CellML to represent huge CellML models:Has anyone worked on this already?

2007-04-23 Thread Andrew Miller
David Nickerson wrote: I am working on developing a CellML model (using external code) of transcriptional control in yeast which is 23 MB in size. I hope to eventually do a similar thing for organisms which have much more complicated sets of interactions, in which case this size may grow

Re: [cellml-discussion] Dimensional consistency andunitsconversions (was [Fwd: Re: ten Tusscher model])

2007-04-23 Thread Matt
So one way out to avoid having to hope that software does the right thing is to make it compulsory that there is units consistency for each dimension across all variables (defined in variable elements) in a CellML component so that the only units conversions that need to take place are at the

[cellml-discussion] Proposal: Refactoring the CCGS into smaller, re-usable components

2007-04-23 Thread Andrew Miller
Hi, I have been wanting to use some functionality present in the CellML Code Generation Service, for a quite different type of problem (not a system of ODEs). The problem is, the functionality isn't exposed. I think there is actually quite a lot of useful functionality in the CCGS which could

[cellml-discussion] some repository stats

2007-04-23 Thread James Lawson
Hi Folks, I have now checked every model in the repository in PCEnv and recorded whether they run, and if so, whether they integrate, or if they don't run, what the error message is. The great majority contain undefined variables. As of 24/04/07: Out of a total of 250 different models (I only