airavata git commit: fixing some of the test failures

[scnakandala]

Repository: airavata
Updated Branches:
  refs/heads/master 80d202785 -> 5d0bee58d


fixing some of the test failures


Project: http://git-wip-us.apache.org/repos/asf/airavata/repo
Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/5d0bee58
Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/5d0bee58
Diff: http://git-wip-us.apache.org/repos/asf/airavata/diff/5d0bee58

Branch: refs/heads/master
Commit: 5d0bee58d24cf77dbd9238eef235bf6e250fdfc4
Parents: 80d2027
Author: scnakandala 
Authored: Wed Dec 16 14:27:06 2015 -0500
Committer: scnakandala 
Committed: Wed Dec 16 14:27:06 2015 -0500

--
 .../airavata/api/server/handler/AiravataServerHandler.java | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)
--


http://git-wip-us.apache.org/repos/asf/airavata/blob/5d0bee58/airavata-api/airavata-api-server/src/main/java/org/apache/airavata/api/server/handler/AiravataServerHandler.java
--
diff --git 
a/airavata-api/airavata-api-server/src/main/java/org/apache/airavata/api/server/handler/AiravataServerHandler.java
 
b/airavata-api/airavata-api-server/src/main/java/org/apache/airavata/api/server/handler/AiravataServerHandler.java
index d9121d8..1ad1536 100644
--- 
a/airavata-api/airavata-api-server/src/main/java/org/apache/airavata/api/server/handler/AiravataServerHandler.java
+++ 
b/airavata-api/airavata-api-server/src/main/java/org/apache/airavata/api/server/handler/AiravataServerHandler.java
@@ -32,6 +32,9 @@ import 
org.apache.airavata.credential.store.client.CredentialStoreClientFactory;
 import org.apache.airavata.credential.store.cpi.CredentialStoreService;
 import org.apache.airavata.credential.store.datamodel.SSHCredential;
 import org.apache.airavata.credential.store.exception.CredentialStoreException;
+import org.apache.airavata.data.catalog.core.DataManagerFactory;
+import org.apache.airavata.data.catalog.cpi.DataManager;
+import org.apache.airavata.data.catalog.cpi.DataManagerException;
 import org.apache.airavata.messaging.core.MessageContext;
 import org.apache.airavata.messaging.core.Publisher;
 import org.apache.airavata.messaging.core.PublisherFactory;
@@ -73,9 +76,6 @@ import 
org.apache.airavata.registry.core.experiment.catalog.impl.RegistryFactory
 import org.apache.airavata.registry.cpi.*;
 import org.apache.airavata.registry.cpi.utils.Constants;
 
-import org.apache.airavata.replica.catalog.core.DataManagerFactory;
-import org.apache.airavata.replica.catalog.cpi.DataManager;
-import org.apache.airavata.replica.catalog.cpi.DataManagerException;
 import org.apache.thrift.TException;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;

[3/5] airavata git commit: changes to the replicaLocation data model

[scnakandala]

http://git-wip-us.apache.org/repos/asf/airavata/blob/36da4ee4/airavata-api/airavata-client-sdks/airavata-php-sdk/src/main/resources/lib/Airavata/Model/Data/Resource/Types.php
--
diff --git 
a/airavata-api/airavata-client-sdks/airavata-php-sdk/src/main/resources/lib/Airavata/Model/Data/Resource/Types.php
 
b/airavata-api/airavata-client-sdks/airavata-php-sdk/src/main/resources/lib/Airavata/Model/Data/Resource/Types.php
index 32140e2..cd5542a 100644
--- 
a/airavata-api/airavata-client-sdks/airavata-php-sdk/src/main/resources/lib/Airavata/Model/Data/Resource/Types.php
+++ 
b/airavata-api/airavata-client-sdks/airavata-php-sdk/src/main/resources/lib/Airavata/Model/Data/Resource/Types.php
@@ -519,35 +519,23 @@ class DataReplicaLocationModel {
   /**
* @var int
*/
-  public $replicaLocationCategory = null;
-  /**
-   * @var int
-   */
-  public $replicaPersistentType = null;
-  /**
-   * @var string
-   */
-  public $storageResourceId = null;
-  /**
-   * @var string
-   */
-  public $storageResourceHostName = null;
+  public $validUntilTime = null;
   /**
* @var int
*/
-  public $dataMovementProtocol = null;
+  public $replicaLocationCategory = null;
   /**
* @var int
*/
-  public $hostPort = null;
+  public $replicaPersistentType = null;
   /**
* @var string
*/
-  public $filePath = null;
+  public $storageResourceId = null;
   /**
* @var string
*/
-  public $replicaUrl = null;
+  public $fileAbsolutePath = null;
   /**
* @var array
*/
@@ -581,38 +569,26 @@ class DataReplicaLocationModel {
   'type' => TType::I64,
   ),
 7 => array(
-  'var' => 'replicaLocationCategory',
-  'type' => TType::I32,
+  'var' => 'validUntilTime',
+  'type' => TType::I64,
   ),
 8 => array(
-  'var' => 'replicaPersistentType',
+  'var' => 'replicaLocationCategory',
   'type' => TType::I32,
   ),
 9 => array(
-  'var' => 'storageResourceId',
-  'type' => TType::STRING,
+  'var' => 'replicaPersistentType',
+  'type' => TType::I32,
   ),
 10 => array(
-  'var' => 'storageResourceHostName',
+  'var' => 'storageResourceId',
   'type' => TType::STRING,
   ),
 11 => array(
-  'var' => 'dataMovementProtocol',
-  'type' => TType::I32,
-  ),
-12 => array(
-  'var' => 'hostPort',
-  'type' => TType::I64,
-  ),
-13 => array(
-  'var' => 'filePath',
-  'type' => TType::STRING,
-  ),
-14 => array(
-  'var' => 'replicaUrl',
+  'var' => 'fileAbsolutePath',
   'type' => TType::STRING,
   ),
-15 => array(
+12 => array(
   'var' => 'replicaMetadata',
   'type' => TType::MAP,
   'ktype' => TType::STRING,
@@ -645,6 +621,9 @@ class DataReplicaLocationModel {
   if (isset($vals['lastModifiedTime'])) {
 $this->lastModifiedTime = $vals['lastModifiedTime'];
   }
+  if (isset($vals['validUntilTime'])) {
+$this->validUntilTime = $vals['validUntilTime'];
+  }
   if (isset($vals['replicaLocationCategory'])) {
 $this->replicaLocationCategory = $vals['replicaLocationCategory'];
   }
@@ -654,20 +633,8 @@ class DataReplicaLocationModel {
   if (isset($vals['storageResourceId'])) {
 $this->storageResourceId = $vals['storageResourceId'];
   }
-  if (isset($vals['storageResourceHostName'])) {
-$this->storageResourceHostName = $vals['storageResourceHostName'];
-  }
-  if (isset($vals['dataMovementProtocol'])) {
-$this->dataMovementProtocol = $vals['dataMovementProtocol'];
-  }
-  if (isset($vals['hostPort'])) {
-$this->hostPort = $vals['hostPort'];
-  }
-  if (isset($vals['filePath'])) {
-$this->filePath = $vals['filePath'];
-  }
-  if (isset($vals['replicaUrl'])) {
-$this->replicaUrl = $vals['replicaUrl'];
+  if (isset($vals['fileAbsolutePath'])) {
+$this->fileAbsolutePath = $vals['fileAbsolutePath'];
   }
   if (isset($vals['replicaMetadata'])) {
 $this->replicaMetadata = $vals['replicaMetadata'];
@@ -737,62 +704,41 @@ class DataReplicaLocationModel {
   }
   break;
 case 7:
-  if ($ftype == TType::I32) {
-$xfer += $input->readI32($this->replicaLocationCategory);
+  if ($ftype == TType::I64) {
+$xfer += $input->readI64($this->validUntilTime);
   } else {
 $xfer += $input->skip($ftype);
   }
   break;
 case 8:
   if ($ftype == TType::I32) {
-$xfer += $input->readI32($this->replicaPersistentType);
+$xfer += $input->readI32($this->replicaLocationCategory);
   } else {
 $xfer 

[1/5] airavata git commit: changes to the replicaLocation data model

[scnakandala]

Repository: airavata
Updated Branches:
  refs/heads/master 5d0bee58d -> 36da4ee4d


http://git-wip-us.apache.org/repos/asf/airavata/blob/36da4ee4/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/experiment/UserConfigurationDataModel.java
--
diff --git 
a/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/experiment/UserConfigurationDataModel.java
 
b/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/experiment/UserConfigurationDataModel.java
index 11a9fd1..761ccc9 100644
--- 
a/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/experiment/UserConfigurationDataModel.java
+++ 
b/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/experiment/UserConfigurationDataModel.java
@@ -56,7 +56,7 @@ import org.slf4j.LoggerFactory;
  * 
  * 
  */
-@Generated(value = "Autogenerated by Thrift Compiler (0.9.3)", date = 
"2015-12-15")
+@Generated(value = "Autogenerated by Thrift Compiler (0.9.3)", date = 
"2015-12-16")
 public class UserConfigurationDataModel implements 
org.apache.thrift.TBase, java.io.Serializable, Cloneable, 
Comparable {
   private static final org.apache.thrift.protocol.TStruct STRUCT_DESC = new 
org.apache.thrift.protocol.TStruct("UserConfigurationDataModel");
 

http://git-wip-us.apache.org/repos/asf/airavata/blob/36da4ee4/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/job/JobModel.java
--
diff --git 
a/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/job/JobModel.java
 
b/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/job/JobModel.java
index 88dbca0..48defaa 100644
--- 
a/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/job/JobModel.java
+++ 
b/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/job/JobModel.java
@@ -51,7 +51,7 @@ import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 
 @SuppressWarnings({"cast", "rawtypes", "serial", "unchecked"})
-@Generated(value = "Autogenerated by Thrift Compiler (0.9.3)", date = 
"2015-12-15")
+@Generated(value = "Autogenerated by Thrift Compiler (0.9.3)", date = 
"2015-12-16")
 public class JobModel implements org.apache.thrift.TBase, java.io.Serializable, Cloneable, Comparable {
   private static final org.apache.thrift.protocol.TStruct STRUCT_DESC = new 
org.apache.thrift.protocol.TStruct("JobModel");
 

http://git-wip-us.apache.org/repos/asf/airavata/blob/36da4ee4/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/messaging/event/ExperimentStatusChangeEvent.java
--
diff --git 
a/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/messaging/event/ExperimentStatusChangeEvent.java
 
b/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/messaging/event/ExperimentStatusChangeEvent.java
index eddcdb9..eadaa35 100644
--- 
a/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/messaging/event/ExperimentStatusChangeEvent.java
+++ 
b/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/messaging/event/ExperimentStatusChangeEvent.java
@@ -51,7 +51,7 @@ import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 
 @SuppressWarnings({"cast", "rawtypes", "serial", "unchecked"})
-@Generated(value = "Autogenerated by Thrift Compiler (0.9.3)", date = 
"2015-12-15")
+@Generated(value = "Autogenerated by Thrift Compiler (0.9.3)", date = 
"2015-12-16")
 public class ExperimentStatusChangeEvent implements 
org.apache.thrift.TBase, java.io.Serializable, Cloneable, 
Comparable {
   private static final org.apache.thrift.protocol.TStruct STRUCT_DESC = new 
org.apache.thrift.protocol.TStruct("ExperimentStatusChangeEvent");
 

http://git-wip-us.apache.org/repos/asf/airavata/blob/36da4ee4/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/messaging/event/JobIdentifier.java
--
diff --git 
a/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/messaging/event/JobIdentifier.java
 
b/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/messaging/event/JobIdentifier.java
index e1d8c0d..235f8e7 100644
--- 
a/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/messaging/event/JobIdentifier.java
+++ 
b/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/messaging/event/JobIdentifier.java
@@ -51,7 +51,7 @@ import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
 
 @SuppressWarnings({"cast", "rawtypes", 

[4/5] airavata git commit: changes to the replicaLocation data model

[scnakandala]

http://git-wip-us.apache.org/repos/asf/airavata/blob/36da4ee4/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/Airavata_server.skeleton.cpp
--
diff --git 
a/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/Airavata_server.skeleton.cpp
 
b/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/Airavata_server.skeleton.cpp
index aabc232..4be84d3 100644
--- 
a/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/Airavata_server.skeleton.cpp
+++ 
b/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/Airavata_server.skeleton.cpp
@@ -78,6 +78,8 @@ class AiravataHandler : virtual public AiravataIf {
* @return gateway
*Modified gateway obejct.
* 
+   * @exception AiravataClientException
+   * 
* 
* 
* @param authzToken
@@ -138,6 +140,23 @@ class AiravataHandler : virtual public AiravataIf {
 printf("getAllGateways\n");
   }
 
+  /**
+   * Check for the Existance of a Gateway within Airavata
+   * 
+   * @param gatewayId
+   *   Provide the gatewayId of the gateway you want to check the existancy
+   * 
+   * @return boolean
+   *   Boolean idetifier for the existance or non-existane of the gatewayId
+   * 
+   * @return gatewayId
+   *   return the gatewayId of the existing gateway.
+   * 
+   * 
+   * 
+   * @param authzToken
+   * @param gatewayId
+   */
   bool isGatewayExist(const  ::apache::airavata::model::security::AuthzToken& 
authzToken, const std::string& gatewayId) {
 // Your implementation goes here
 printf("isGatewayExist\n");
@@ -232,6 +251,21 @@ class AiravataHandler : virtual public AiravataIf {
 printf("getAllGatewaySSHPubKeys\n");
   }
 
+  /**
+   * Delete a Gateway
+   * 
+   * @param gatewayId
+   *The gateway Id of the Gateway to be deleted.
+   * 
+   * @return boolean
+   *Boolean identifier for the success or failure of the deletion 
operation.
+   * 
+   * 
+   * 
+   * @param authzToken
+   * @param airavataCredStoreToken
+   * @param gatewayId
+   */
   bool deleteSSHPubKey(const  ::apache::airavata::model::security::AuthzToken& 
authzToken, const std::string& airavataCredStoreToken, const std::string& 
gatewayId) {
 // Your implementation goes here
 printf("deleteSSHPubKey\n");
@@ -248,6 +282,7 @@ class AiravataHandler : virtual public AiravataIf {
*The Project Object described in the workspace_model
* 
* 
+   * 
* @param authzToken
* @param gatewayId
* @param project
@@ -258,7 +293,14 @@ class AiravataHandler : virtual public AiravataIf {
   }
 
   /**
-   * Update a Project
+   * Update an Existing Project
+   * 
+   * @param projectId
+   *The projectId of the project needed an update.
+   * 
+   * @return void
+   *Currently this does not return any value.
+   * 
* 
* 
* @param authzToken
@@ -272,6 +314,14 @@ class AiravataHandler : virtual public AiravataIf {
 
   /**
* Get a Project by ID
+   *This method is to obtain a project by providing a projectId
+   * 
+   * @param projectId
+   *projectId of the project you require
+   * 
+   * @return project
+   *project data model will be returned
+   * 
* 
* 
* @param authzToken
@@ -282,24 +332,43 @@ class AiravataHandler : virtual public AiravataIf {
 printf("getProject\n");
   }
 
+  /**
+   * Delete a Project
+   *This method is used to delete an existing Project
+   * 
+   * @param projectId
+   *projectId of the project you want to delete
+   * 
+   * @return boolean
+   *Boolean identifier for the success or failure of the deletion 
operation.
+   * 
+   * 
+   * 
+   * @param authzToken
+   * @param projectId
+   */
   bool deleteProject(const  ::apache::airavata::model::security::AuthzToken& 
authzToken, const std::string& projectId) {
 // Your implementation goes here
 printf("deleteProject\n");
   }
 
   /**
-   *   * Get all Project by user with pagination. Results will be ordered based
-   *   * on creation time DESC
-   *   *
-   *   * @param gatewayId
-   *   *The identifier for the requested gateway.
-   *   * @param userName
-   *   *The identifier of the user
-   *   * @param limit
-   *   *The amount results to be fetched
-   *   * @param offset
-   *   *The starting point of the results to be fetched
-   * *
+   * Get all Project by user with pagination. Results will be ordered based
+   * on creation time DESC
+   * 
+   * @param gatewayId
+   *The identifier for the requested gateway.
+   * 
+   * @param userName
+   *The identifier of the user
+   * 
+   * @param limit
+   *The amount results to be fetched
+   * 
+   * @param offset
+   *The starting point of the results to be fetched
+   * 
+   * 
* 
* @param authzToken
* @param gatewayId
@@ -327,6 +396,7 @@ class AiravataHandler : virtual 

[2/5] airavata git commit: changes to the replicaLocation data model

[scnakandala]

http://git-wip-us.apache.org/repos/asf/airavata/blob/36da4ee4/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/appcatalog/computeresource/SSHJobSubmission.java
--
diff --git 
a/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/appcatalog/computeresource/SSHJobSubmission.java
 
b/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/appcatalog/computeresource/SSHJobSubmission.java
index 534577e..75e2569 100644
--- 
a/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/appcatalog/computeresource/SSHJobSubmission.java
+++ 
b/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/appcatalog/computeresource/SSHJobSubmission.java
@@ -67,7 +67,7 @@ import org.slf4j.LoggerFactory;
  *the same. Example: *@*.example.com or *@example.com
  * 
  */
-@Generated(value = "Autogenerated by Thrift Compiler (0.9.3)", date = 
"2015-12-15")
+@Generated(value = "Autogenerated by Thrift Compiler (0.9.3)", date = 
"2015-12-16")
 public class SSHJobSubmission implements 
org.apache.thrift.TBase, 
java.io.Serializable, Cloneable, Comparable {
   private static final org.apache.thrift.protocol.TStruct STRUCT_DESC = new 
org.apache.thrift.protocol.TStruct("SSHJobSubmission");
 

http://git-wip-us.apache.org/repos/asf/airavata/blob/36da4ee4/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/appcatalog/computeresource/UnicoreJobSubmission.java
--
diff --git 
a/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/appcatalog/computeresource/UnicoreJobSubmission.java
 
b/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/appcatalog/computeresource/UnicoreJobSubmission.java
index 239ac66..cfb8eaa 100644
--- 
a/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/appcatalog/computeresource/UnicoreJobSubmission.java
+++ 
b/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/appcatalog/computeresource/UnicoreJobSubmission.java
@@ -59,7 +59,7 @@ import org.slf4j.LoggerFactory;
  * authenticationMode
  *  The authenticationMode defines the way certificate is fetched.
  */
-@Generated(value = "Autogenerated by Thrift Compiler (0.9.3)", date = 
"2015-12-15")
+@Generated(value = "Autogenerated by Thrift Compiler (0.9.3)", date = 
"2015-12-16")
 public class UnicoreJobSubmission implements 
org.apache.thrift.TBase, 
java.io.Serializable, Cloneable, Comparable {
   private static final org.apache.thrift.protocol.TStruct STRUCT_DESC = new 
org.apache.thrift.protocol.TStruct("UnicoreJobSubmission");
 

http://git-wip-us.apache.org/repos/asf/airavata/blob/36da4ee4/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/appcatalog/gatewayprofile/ComputeResourcePreference.java
--
diff --git 
a/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/appcatalog/gatewayprofile/ComputeResourcePreference.java
 
b/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/appcatalog/gatewayprofile/ComputeResourcePreference.java
index 0b9ff29..49d9b2f 100644
--- 
a/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/appcatalog/gatewayprofile/ComputeResourcePreference.java
+++ 
b/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/appcatalog/gatewayprofile/ComputeResourcePreference.java
@@ -85,7 +85,7 @@ import org.slf4j.LoggerFactory;
  *   default credential store.
  * 
  */
-@Generated(value = "Autogenerated by Thrift Compiler (0.9.3)", date = 
"2015-12-15")
+@Generated(value = "Autogenerated by Thrift Compiler (0.9.3)", date = 
"2015-12-16")
 public class ComputeResourcePreference implements 
org.apache.thrift.TBase, java.io.Serializable, Cloneable, 
Comparable {
   private static final org.apache.thrift.protocol.TStruct STRUCT_DESC = new 
org.apache.thrift.protocol.TStruct("ComputeResourcePreference");
 

http://git-wip-us.apache.org/repos/asf/airavata/blob/36da4ee4/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/appcatalog/gatewayprofile/GatewayResourceProfile.java
--
diff --git 
a/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/appcatalog/gatewayprofile/GatewayResourceProfile.java
 
b/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/appcatalog/gatewayprofile/GatewayResourceProfile.java
index 3fec636..e9b7265 100644
--- 

[5/5] airavata git commit: changes to the replicaLocation data model

[scnakandala]

changes to the replicaLocation data model


Project: http://git-wip-us.apache.org/repos/asf/airavata/repo
Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/36da4ee4
Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/36da4ee4
Diff: http://git-wip-us.apache.org/repos/asf/airavata/diff/36da4ee4

Branch: refs/heads/master
Commit: 36da4ee4dac92bba6104d9bc9d89e22e1e837d96
Parents: 5d0bee5
Author: scnakandala 
Authored: Wed Dec 16 15:14:17 2015 -0500
Committer: scnakandala 
Committed: Wed Dec 16 15:14:17 2015 -0500

--
 .../java/org/apache/airavata/api/Airavata.java  | 501 ---
 .../src/main/resources/lib/airavata/Airavata.h  | 512 ---
 .../lib/airavata/Airavata_server.skeleton.cpp   | 499 ---
 .../airavata/replica_catalog_models_types.cpp   | 206 ++---
 .../lib/airavata/replica_catalog_models_types.h |  54 +-
 .../resources/lib/Airavata/API/Airavata.php | 440 ++---
 .../lib/Airavata/Model/Data/Resource/Types.php  | 145 +--
 .../lib/apache/airavata/api/Airavata.py | 884 ++-
 .../airavata/model/data/resource/ttypes.py  | 103 +--
 .../org/apache/airavata/model/Workflow.java |   2 +-
 .../ApplicationDeploymentDescription.java   |   2 +-
 .../appdeployment/ApplicationModule.java|   2 +-
 .../appcatalog/appdeployment/CommandObject.java |   2 +-
 .../appcatalog/appdeployment/SetEnvPaths.java   |   2 +-
 .../ApplicationInterfaceDescription.java|   2 +-
 .../appcatalog/computeresource/BatchQueue.java  |   2 +-
 .../computeresource/CloudJobSubmission.java |   2 +-
 .../ComputeResourceDescription.java |   2 +-
 .../computeresource/GlobusJobSubmission.java|   2 +-
 .../computeresource/JobSubmissionInterface.java |   2 +-
 .../computeresource/LOCALSubmission.java|   2 +-
 .../computeresource/ResourceJobManager.java |   2 +-
 .../computeresource/SSHJobSubmission.java   |   2 +-
 .../computeresource/UnicoreJobSubmission.java   |   2 +-
 .../ComputeResourcePreference.java  |   2 +-
 .../gatewayprofile/GatewayResourceProfile.java  |   2 +-
 .../gatewayprofile/StoragePreference.java   |   2 +-
 .../StorageResourceDescription.java |   2 +-
 .../application/io/InputDataObjectType.java |   2 +-
 .../application/io/OutputDataObjectType.java|   2 +-
 .../airavata/model/commons/ErrorModel.java  |   2 +-
 .../model/commons/ValidationResults.java|   2 +-
 .../airavata/model/commons/ValidatorResult.java |   2 +-
 .../data/movement/DataMovementInterface.java|   2 +-
 .../data/movement/GridFTPDataMovement.java  |   2 +-
 .../model/data/movement/LOCALDataMovement.java  |   2 +-
 .../model/data/movement/SCPDataMovement.java|   2 +-
 .../data/movement/UnicoreDataMovement.java  |   2 +-
 .../data/resource/DataReplicaLocationModel.java | 686 --
 .../model/data/resource/DataResourceModel.java  |   2 +-
 .../model/error/AiravataClientException.java|   2 +-
 .../model/error/AiravataSystemException.java|   2 +-
 .../model/error/AuthenticationException.java|   2 +-
 .../model/error/AuthorizationException.java |   2 +-
 .../error/ExperimentNotFoundException.java  |   2 +-
 .../model/error/InvalidRequestException.java|   2 +-
 .../model/error/LaunchValidationException.java  |   2 +-
 .../model/error/ProjectNotFoundException.java   |   2 +-
 .../airavata/model/error/TimedOutException.java |   2 +-
 .../airavata/model/error/ValidationResults.java |   2 +-
 .../airavata/model/error/ValidatorResult.java   |   2 +-
 .../model/experiment/ExperimentModel.java   |   2 +-
 .../model/experiment/ExperimentStatistics.java  |   2 +-
 .../experiment/ExperimentSummaryModel.java  |   2 +-
 .../experiment/UserConfigurationDataModel.java  |   2 +-
 .../org/apache/airavata/model/job/JobModel.java |   2 +-
 .../event/ExperimentStatusChangeEvent.java  |   2 +-
 .../model/messaging/event/JobIdentifier.java|   2 +-
 .../messaging/event/JobStatusChangeEvent.java   |   2 +-
 .../event/JobStatusChangeRequestEvent.java  |   2 +-
 .../airavata/model/messaging/event/Message.java |   2 +-
 .../messaging/event/ProcessIdentifier.java  |   2 +-
 .../event/ProcessStatusChangeEvent.java |   2 +-
 .../event/ProcessStatusChangeRequestEvent.java  |   2 +-
 .../messaging/event/ProcessSubmitEvent.java |   2 +-
 .../messaging/event/ProcessTerminateEvent.java  |   2 +-
 .../model/messaging/event/TaskIdentifier.java   |   2 +-
 .../messaging/event/TaskOutputChangeEvent.java  |   2 +-
 .../messaging/event/TaskStatusChangeEvent.java  |   2 +-
 .../event/TaskStatusChangeRequestEvent.java |   2 +-
 .../airavata/model/process/ProcessModel.java|   2 +-
 .../ComputationalResourceSchedulingModel.java   |   2 +-
 .../airavata/model/security/AuthzToken.java |   2 +-
 

[5/5] airavata git commit: adding data mover code to data manager

[scnakandala]

adding data mover code to data manager


Project: http://git-wip-us.apache.org/repos/asf/airavata/repo
Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/6572a821
Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/6572a821
Diff: http://git-wip-us.apache.org/repos/asf/airavata/diff/6572a821

Branch: refs/heads/master
Commit: 6572a821436871df07d5747949c16c14fce69444
Parents: 36da4ee
Author: scnakandala 
Authored: Wed Dec 16 18:21:39 2015 -0500
Committer: scnakandala 
Committed: Wed Dec 16 18:21:39 2015 -0500

--
 .../server/handler/AiravataServerHandler.java   |62 +-
 .../java/org/apache/airavata/api/Airavata.java  | 37488 +
 .../main/resources/lib/airavata/Airavata.cpp|   569 +
 .../src/main/resources/lib/airavata/Airavata.h  |   170 +
 .../lib/airavata/Airavata_server.skeleton.cpp   | 5 +
 .../resources/lib/Airavata/API/Airavata.php |   402 +
 .../lib/apache/airavata/api/Airavata-remote | 7 +
 .../lib/apache/airavata/api/Airavata.py |   320 +
 .../data/catalog/core/DataManagerFactory.java   |34 -
 .../data/catalog/core/DataManagerImpl.java  |   207 -
 .../data/manager/core/DataManagerFactory.java   |34 +
 .../data/manager/core/DataManagerImpl.java  |   393 +
 .../data/manager/core/ssh/CommandOutput.java|34 +
 .../data/manager/core/ssh/SSHApiException.java  |33 +
 .../data/manager/core/ssh/SSHUtils.java |   505 +
 .../manager/core/ssh/StandardOutReader.java |86 +
 .../manager/core/DataManagerFactoryTest.java|45 +
 .../data/manager/core/DataManagerImplTest.java  |   208 +
 .../data/manager/core/utils/AppCatInit.java |   320 +
 .../data/manager/core/utils/DataCatInit.java|   315 +
 .../catalog/core/DataManagerFactoryTest.java|41 -
 .../data/catalog/core/DataManagerImplTest.java  |   205 -
 .../data/catalog/core/utils/AppCatInit.java |   320 -
 .../data/catalog/core/utils/DataCatInit.java|   315 -
 .../airavata/data/catalog/cpi/DataManager.java  |98 -
 .../data/catalog/cpi/DataManagerConstants.java  |28 -
 .../data/catalog/cpi/DataManagerException.java  |35 -
 .../airavata/data/manager/cpi/DataManager.java  |   109 +
 .../data/manager/cpi/DataManagerConstants.java  |28 +
 .../data/manager/cpi/DataManagerException.java  |35 +
 modules/data-manager/pom.xml| 4 +
 .../airavata-apis/airavata_api.thrift   |10 +
 32 files changed, 23212 insertions(+), 19253 deletions(-)
--


http://git-wip-us.apache.org/repos/asf/airavata/blob/6572a821/airavata-api/airavata-api-server/src/main/java/org/apache/airavata/api/server/handler/AiravataServerHandler.java
--
diff --git 
a/airavata-api/airavata-api-server/src/main/java/org/apache/airavata/api/server/handler/AiravataServerHandler.java
 
b/airavata-api/airavata-api-server/src/main/java/org/apache/airavata/api/server/handler/AiravataServerHandler.java
index 1ad1536..0917f5e 100644
--- 
a/airavata-api/airavata-api-server/src/main/java/org/apache/airavata/api/server/handler/AiravataServerHandler.java
+++ 
b/airavata-api/airavata-api-server/src/main/java/org/apache/airavata/api/server/handler/AiravataServerHandler.java
@@ -32,9 +32,9 @@ import 
org.apache.airavata.credential.store.client.CredentialStoreClientFactory;
 import org.apache.airavata.credential.store.cpi.CredentialStoreService;
 import org.apache.airavata.credential.store.datamodel.SSHCredential;
 import org.apache.airavata.credential.store.exception.CredentialStoreException;
-import org.apache.airavata.data.catalog.core.DataManagerFactory;
-import org.apache.airavata.data.catalog.cpi.DataManager;
-import org.apache.airavata.data.catalog.cpi.DataManagerException;
+import org.apache.airavata.data.manager.core.DataManagerFactory;
+import org.apache.airavata.data.manager.cpi.DataManager;
+import org.apache.airavata.data.manager.cpi.DataManagerException;
 import org.apache.airavata.messaging.core.MessageContext;
 import org.apache.airavata.messaging.core.Publisher;
 import org.apache.airavata.messaging.core.PublisherFactory;
@@ -4069,17 +4069,6 @@ public class AiravataServerHandler implements 
Airavata.Iface {
  * *
  */
 
-/**
- * Create new data resource. Resourse ID is returned
- * @param authzToken
- * @param dataResourceModel
- * @return
- * @throws InvalidRequestException
- * @throws AiravataClientException
- * @throws AiravataSystemException
- * @throws AuthorizationException
- * @throws TException
- */
 @Override
 @SecurityCheck
 public String registerDataResource(AuthzToken authzToken, 
DataResourceModel dataResourceModel) throws InvalidRequestException, 
AiravataClientException, AiravataSystemException, 

[2/5] airavata git commit: adding data mover code to data manager

[scnakandala]

http://git-wip-us.apache.org/repos/asf/airavata/blob/6572a821/modules/data-manager/data-manager-core/src/main/java/org/apache/airavata/data/manager/core/DataManagerImpl.java
--
diff --git 
a/modules/data-manager/data-manager-core/src/main/java/org/apache/airavata/data/manager/core/DataManagerImpl.java
 
b/modules/data-manager/data-manager-core/src/main/java/org/apache/airavata/data/manager/core/DataManagerImpl.java
new file mode 100644
index 000..4b79af1
--- /dev/null
+++ 
b/modules/data-manager/data-manager-core/src/main/java/org/apache/airavata/data/manager/core/DataManagerImpl.java
@@ -0,0 +1,393 @@
+/*
+ *
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ *
+*/
+package org.apache.airavata.data.manager.core;
+
+import com.jcraft.jsch.JSch;
+import com.jcraft.jsch.JSchException;
+import com.jcraft.jsch.Session;
+import org.apache.airavata.common.exception.ApplicationSettingsException;
+import org.apache.airavata.common.utils.ServerSettings;
+import 
org.apache.airavata.credential.store.client.CredentialStoreClientFactory;
+import org.apache.airavata.credential.store.cpi.CredentialStoreService;
+import org.apache.airavata.credential.store.datamodel.SSHCredential;
+import org.apache.airavata.credential.store.exception.CredentialStoreException;
+import org.apache.airavata.data.manager.core.ssh.SSHUtils;
+import 
org.apache.airavata.model.appcatalog.gatewayprofile.GatewayResourceProfile;
+import org.apache.airavata.model.appcatalog.gatewayprofile.StoragePreference;
+import 
org.apache.airavata.model.appcatalog.storageresource.StorageResourceDescription;
+import org.apache.airavata.model.data.movement.DataMovementInterface;
+import org.apache.airavata.model.data.movement.DataMovementProtocol;
+import org.apache.airavata.model.data.movement.SCPDataMovement;
+import org.apache.airavata.model.data.resource.DataReplicaLocationModel;
+import org.apache.airavata.model.data.resource.DataResourceModel;
+import org.apache.airavata.model.data.resource.DataResourceType;
+import 
org.apache.airavata.registry.core.experiment.catalog.impl.RegistryFactory;
+import org.apache.airavata.registry.cpi.AppCatalog;
+import org.apache.airavata.registry.cpi.AppCatalogException;
+import org.apache.airavata.registry.cpi.DataCatalog;
+import org.apache.airavata.registry.cpi.DataCatalogException;
+
+import org.apache.airavata.data.manager.cpi.DataManager;
+import org.apache.airavata.data.manager.cpi.DataManagerException;
+import org.apache.thrift.TException;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+import java.io.File;
+import java.io.IOException;
+import java.util.List;
+import java.util.Optional;
+
+public class DataManagerImpl implements DataManager {
+private final static Logger logger = 
LoggerFactory.getLogger(DataManagerImpl.class);
+
+private final AppCatalog appCatalog;
+private final DataCatalog dataCatalog;
+
+public DataManagerImpl() throws DataManagerException {
+try {
+this.appCatalog = RegistryFactory.getAppCatalog();
+this.dataCatalog = RegistryFactory.getDataCatalog();
+} catch (Exception e) {
+logger.error(e.getMessage(), e);
+throw new DataManagerException(e);
+}
+}
+
+public DataManagerImpl(AppCatalog appCatalog, DataCatalog dataCatalog){
+this.appCatalog = appCatalog;
+this.dataCatalog = dataCatalog;
+}
+
+/**
+ * To create a replica entry for an already existing file(s). This is how 
the system comes to know about already
+ * existing resources
+ * @param dataResourceModel
+ * @return
+ */
+@Override
+public String registerResource(DataResourceModel dataResourceModel) throws 
DataManagerException {
+try {
+String resourceId = dataCatalog.publishResource(dataResourceModel);
+return resourceId;
+} catch (DataCatalogException e) {
+logger.error(e.getMessage(), e);
+throw new DataManagerException(e);
+}
+}
+
+/**
+ * To remove a resource entry from the replica catalog
+ * @param resourceId
+ * @return
+ */
+@Override
+public 

[1/5] airavata git commit: adding data mover code to data manager

[scnakandala]

Repository: airavata
Updated Branches:
  refs/heads/master 36da4ee4d -> 6572a8214


http://git-wip-us.apache.org/repos/asf/airavata/blob/6572a821/modules/data-manager/data-manager-core/src/test/java/org/apache/airavata/data/catalog/core/DataManagerImplTest.java
--
diff --git 
a/modules/data-manager/data-manager-core/src/test/java/org/apache/airavata/data/catalog/core/DataManagerImplTest.java
 
b/modules/data-manager/data-manager-core/src/test/java/org/apache/airavata/data/catalog/core/DataManagerImplTest.java
deleted file mode 100644
index f644520..000
--- 
a/modules/data-manager/data-manager-core/src/test/java/org/apache/airavata/data/catalog/core/DataManagerImplTest.java
+++ /dev/null
@@ -1,205 +0,0 @@
-/*
- *
- * Licensed to the Apache Software Foundation (ASF) under one
- * or more contributor license agreements.  See the NOTICE file
- * distributed with this work for additional information
- * regarding copyright ownership.  The ASF licenses this file
- * to you under the Apache License, Version 2.0 (the
- * "License"); you may not use this file except in compliance
- * with the License.  You may obtain a copy of the License at
- *
- *   http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing,
- * software distributed under the License is distributed on an
- * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
- * KIND, either express or implied.  See the License for the
- * specific language governing permissions and limitations
- * under the License.
- *
-*/
-package org.apache.airavata.data.catalog.core;
-
-import org.apache.airavata.data.catalog.cpi.DataManagerException;
-import org.apache.airavata.data.catalog.core.utils.AppCatInit;
-import org.apache.airavata.data.catalog.core.utils.DataCatInit;
-import org.apache.airavata.model.data.resource.DataReplicaLocationModel;
-import org.apache.airavata.model.data.resource.DataResourceModel;
-import 
org.apache.airavata.registry.core.experiment.catalog.impl.RegistryFactory;
-import org.apache.airavata.registry.cpi.DataCatalog;
-import org.apache.airavata.data.catalog.cpi.DataManager;
-import org.junit.AfterClass;
-import org.junit.Assert;
-import org.junit.BeforeClass;
-import org.junit.Test;
-import org.slf4j.Logger;
-import org.slf4j.LoggerFactory;
-
-import java.util.List;
-import java.util.UUID;
-
-public class DataManagerImplTest {
-private final static Logger logger = 
LoggerFactory.getLogger(DataManagerImplTest.class);
-private static AppCatInit appCatInit;
-private static DataCatInit dataCatInit;
-private static DataManager dataManager;
-private static DataResourceModel dataResourceModel;
-private static DataReplicaLocationModel dataReplicaLocationModel;
-
-@BeforeClass
-public static void setUp() {
-try {
-System.out.println("** SET UP ");
-appCatInit = new AppCatInit("appcatalog-derby.sql");
-appCatInit.initializeDB();
-dataCatInit = new DataCatInit("datacatalog-derby.sql");
-dataCatInit.initializeDB();
-DataCatalog dataCatalog = RegistryFactory.getDataCatalog();
-DataManagerImplTest.dataManager = new DataManagerImpl(dataCatalog);
-dataResourceModel = new DataResourceModel();
-dataResourceModel.setResourceName("test-file.txt");
-dataReplicaLocationModel = new DataReplicaLocationModel();
-dataReplicaLocationModel.setReplicaName("1-st-replica");
-} catch (Exception e) {
-logger.error(e.getMessage(), e);
-}
-}
-
-@AfterClass
-public static void tearDown() throws Exception {
-System.out.println("** TEAR DOWN ");
-dataCatInit.stopDerbyServer();
-}
-
-@Test
-public void testPublishDataResource(){
-try {
-String resourceId = 
dataManager.registerResource(dataResourceModel);
-org.junit.Assert.assertNotNull(resourceId);
-} catch (DataManagerException e) {
-e.printStackTrace();
-Assert.fail();
-}
-}
-
-@Test
-public void testRemoveDataResource(){
-try {
-boolean result = dataManager.removeResource("234234234");
-Assert.assertFalse(result);
-String resourceId = 
dataManager.registerResource(dataResourceModel);
-Assert.assertNotNull(resourceId);
-result = dataManager.removeResource(resourceId);
-Assert.assertTrue(result);
-result = dataManager.removeResource(resourceId);
-Assert.assertFalse(result);
-} catch (DataManagerException e) {
-e.printStackTrace();
-Assert.fail();
-}
-}
-
-@Test
-public void testGetDataResource(){
-try {
-String resourceId = 
dataManager.registerResource(dataResourceModel);

[4/5] airavata git commit: adding data mover code to data manager

[scnakandala]

http://git-wip-us.apache.org/repos/asf/airavata/blob/6572a821/airavata-api/airavata-api-stubs/src/main/java/org/apache/airavata/api/Airavata.java
--
diff --git 
a/airavata-api/airavata-api-stubs/src/main/java/org/apache/airavata/api/Airavata.java
 
b/airavata-api/airavata-api-stubs/src/main/java/org/apache/airavata/api/Airavata.java
index b84b3ac..9d117e5 100644
--- 
a/airavata-api/airavata-api-stubs/src/main/java/org/apache/airavata/api/Airavata.java
+++ 
b/airavata-api/airavata-api-stubs/src/main/java/org/apache/airavata/api/Airavata.java
@@ -2324,6 +2324,8 @@ public class Airavata {
 
 public org.apache.airavata.model.data.resource.DataResourceModel 
getDataResource(org.apache.airavata.model.security.AuthzToken authzToken, 
String resourceId) throws 
org.apache.airavata.model.error.InvalidRequestException, 
org.apache.airavata.model.error.AiravataClientException, 
org.apache.airavata.model.error.AiravataSystemException, 
org.apache.airavata.model.error.AuthorizationException, 
org.apache.thrift.TException;
 
+public String 
copyDataResource(org.apache.airavata.model.security.AuthzToken authzToken, 
String resourceId, String destStorageResourceId, String destinationParentPath) 
throws org.apache.airavata.model.error.InvalidRequestException, 
org.apache.airavata.model.error.AiravataClientException, 
org.apache.airavata.model.error.AiravataSystemException, 
org.apache.airavata.model.error.AuthorizationException, 
org.apache.thrift.TException;
+
   }
 
   public interface AsyncIface {
@@ -2600,6 +2602,8 @@ public class Airavata {
 
 public void getDataResource(org.apache.airavata.model.security.AuthzToken 
authzToken, String resourceId, org.apache.thrift.async.AsyncMethodCallback 
resultHandler) throws org.apache.thrift.TException;
 
+public void copyDataResource(org.apache.airavata.model.security.AuthzToken 
authzToken, String resourceId, String destStorageResourceId, String 
destinationParentPath, org.apache.thrift.async.AsyncMethodCallback 
resultHandler) throws org.apache.thrift.TException;
+
   }
 
   public static class Client extends org.apache.thrift.TServiceClient 
implements Iface {
@@ -7610,6 +7614,44 @@ public class Airavata {
   throw new 
org.apache.thrift.TApplicationException(org.apache.thrift.TApplicationException.MISSING_RESULT,
 "getDataResource failed: unknown result");
 }
 
+public String 
copyDataResource(org.apache.airavata.model.security.AuthzToken authzToken, 
String resourceId, String destStorageResourceId, String destinationParentPath) 
throws org.apache.airavata.model.error.InvalidRequestException, 
org.apache.airavata.model.error.AiravataClientException, 
org.apache.airavata.model.error.AiravataSystemException, 
org.apache.airavata.model.error.AuthorizationException, 
org.apache.thrift.TException
+{
+  send_copyDataResource(authzToken, resourceId, destStorageResourceId, 
destinationParentPath);
+  return recv_copyDataResource();
+}
+
+public void 
send_copyDataResource(org.apache.airavata.model.security.AuthzToken authzToken, 
String resourceId, String destStorageResourceId, String destinationParentPath) 
throws org.apache.thrift.TException
+{
+  copyDataResource_args args = new copyDataResource_args();
+  args.setAuthzToken(authzToken);
+  args.setResourceId(resourceId);
+  args.setDestStorageResourceId(destStorageResourceId);
+  args.setDestinationParentPath(destinationParentPath);
+  sendBase("copyDataResource", args);
+}
+
+public String recv_copyDataResource() throws 
org.apache.airavata.model.error.InvalidRequestException, 
org.apache.airavata.model.error.AiravataClientException, 
org.apache.airavata.model.error.AiravataSystemException, 
org.apache.airavata.model.error.AuthorizationException, 
org.apache.thrift.TException
+{
+  copyDataResource_result result = new copyDataResource_result();
+  receiveBase(result, "copyDataResource");
+  if (result.isSetSuccess()) {
+return result.success;
+  }
+  if (result.ire != null) {
+throw result.ire;
+  }
+  if (result.ace != null) {
+throw result.ace;
+  }
+  if (result.ase != null) {
+throw result.ase;
+  }
+  if (result.ae != null) {
+throw result.ae;
+  }
+  throw new 
org.apache.thrift.TApplicationException(org.apache.thrift.TApplicationException.MISSING_RESULT,
 "copyDataResource failed: unknown result");
+}
+
   }
   public static class AsyncClient extends org.apache.thrift.async.TAsyncClient 
implements AsyncIface {
 public static class Factory implements 
org.apache.thrift.async.TAsyncClientFactory {
@@ -12718,6 +12760,47 @@ public class Airavata {
   }
 }
 
+public void copyDataResource(org.apache.airavata.model.security.AuthzToken 
authzToken, String resourceId, String destStorageResourceId, String 
destinationParentPath, 

[3/5] airavata git commit: adding data mover code to data manager

[scnakandala]

http://git-wip-us.apache.org/repos/asf/airavata/blob/6572a821/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/Airavata.cpp
--
diff --git 
a/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/Airavata.cpp
 
b/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/Airavata.cpp
index 3b8976d..5fa7f87 100644
--- 
a/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/Airavata.cpp
+++ 
b/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/Airavata.cpp
@@ -42468,6 +42468,333 @@ uint32_t 
Airavata_getDataResource_presult::read(::apache::thrift::protocol::TPro
   return xfer;
 }
 
+
+Airavata_copyDataResource_args::~Airavata_copyDataResource_args() throw() {
+}
+
+
+uint32_t 
Airavata_copyDataResource_args::read(::apache::thrift::protocol::TProtocol* 
iprot) {
+
+  apache::thrift::protocol::TInputRecursionTracker tracker(*iprot);
+  uint32_t xfer = 0;
+  std::string fname;
+  ::apache::thrift::protocol::TType ftype;
+  int16_t fid;
+
+  xfer += iprot->readStructBegin(fname);
+
+  using ::apache::thrift::protocol::TProtocolException;
+
+  bool isset_authzToken = false;
+  bool isset_resourceId = false;
+  bool isset_destStorageResourceId = false;
+  bool isset_destinationParentPath = false;
+
+  while (true)
+  {
+xfer += iprot->readFieldBegin(fname, ftype, fid);
+if (ftype == ::apache::thrift::protocol::T_STOP) {
+  break;
+}
+switch (fid)
+{
+  case 1:
+if (ftype == ::apache::thrift::protocol::T_STRUCT) {
+  xfer += this->authzToken.read(iprot);
+  isset_authzToken = true;
+} else {
+  xfer += iprot->skip(ftype);
+}
+break;
+  case 2:
+if (ftype == ::apache::thrift::protocol::T_STRING) {
+  xfer += iprot->readString(this->resourceId);
+  isset_resourceId = true;
+} else {
+  xfer += iprot->skip(ftype);
+}
+break;
+  case 3:
+if (ftype == ::apache::thrift::protocol::T_STRING) {
+  xfer += iprot->readString(this->destStorageResourceId);
+  isset_destStorageResourceId = true;
+} else {
+  xfer += iprot->skip(ftype);
+}
+break;
+  case 4:
+if (ftype == ::apache::thrift::protocol::T_STRING) {
+  xfer += iprot->readString(this->destinationParentPath);
+  isset_destinationParentPath = true;
+} else {
+  xfer += iprot->skip(ftype);
+}
+break;
+  default:
+xfer += iprot->skip(ftype);
+break;
+}
+xfer += iprot->readFieldEnd();
+  }
+
+  xfer += iprot->readStructEnd();
+
+  if (!isset_authzToken)
+throw TProtocolException(TProtocolException::INVALID_DATA);
+  if (!isset_resourceId)
+throw TProtocolException(TProtocolException::INVALID_DATA);
+  if (!isset_destStorageResourceId)
+throw TProtocolException(TProtocolException::INVALID_DATA);
+  if (!isset_destinationParentPath)
+throw TProtocolException(TProtocolException::INVALID_DATA);
+  return xfer;
+}
+
+uint32_t 
Airavata_copyDataResource_args::write(::apache::thrift::protocol::TProtocol* 
oprot) const {
+  uint32_t xfer = 0;
+  apache::thrift::protocol::TOutputRecursionTracker tracker(*oprot);
+  xfer += oprot->writeStructBegin("Airavata_copyDataResource_args");
+
+  xfer += oprot->writeFieldBegin("authzToken", 
::apache::thrift::protocol::T_STRUCT, 1);
+  xfer += this->authzToken.write(oprot);
+  xfer += oprot->writeFieldEnd();
+
+  xfer += oprot->writeFieldBegin("resourceId", 
::apache::thrift::protocol::T_STRING, 2);
+  xfer += oprot->writeString(this->resourceId);
+  xfer += oprot->writeFieldEnd();
+
+  xfer += oprot->writeFieldBegin("destStorageResourceId", 
::apache::thrift::protocol::T_STRING, 3);
+  xfer += oprot->writeString(this->destStorageResourceId);
+  xfer += oprot->writeFieldEnd();
+
+  xfer += oprot->writeFieldBegin("destinationParentPath", 
::apache::thrift::protocol::T_STRING, 4);
+  xfer += oprot->writeString(this->destinationParentPath);
+  xfer += oprot->writeFieldEnd();
+
+  xfer += oprot->writeFieldStop();
+  xfer += oprot->writeStructEnd();
+  return xfer;
+}
+
+
+Airavata_copyDataResource_pargs::~Airavata_copyDataResource_pargs() throw() {
+}
+
+
+uint32_t 
Airavata_copyDataResource_pargs::write(::apache::thrift::protocol::TProtocol* 
oprot) const {
+  uint32_t xfer = 0;
+  apache::thrift::protocol::TOutputRecursionTracker tracker(*oprot);
+  xfer += oprot->writeStructBegin("Airavata_copyDataResource_pargs");
+
+  xfer += oprot->writeFieldBegin("authzToken", 
::apache::thrift::protocol::T_STRUCT, 1);
+  xfer += (*(this->authzToken)).write(oprot);
+  xfer += oprot->writeFieldEnd();
+
+  xfer += oprot->writeFieldBegin("resourceId", 
::apache::thrift::protocol::T_STRING, 2);
+  xfer += 

airavata git commit: fixing some date issues

[scnakandala]

Repository: airavata
Updated Branches:
  refs/heads/master 6572a8214 -> 1837eea8c


fixing some date issues


Project: http://git-wip-us.apache.org/repos/asf/airavata/repo
Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/1837eea8
Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/1837eea8
Diff: http://git-wip-us.apache.org/repos/asf/airavata/diff/1837eea8

Branch: refs/heads/master
Commit: 1837eea8cd2a0c2114b45ee463f0d56540a3f88d
Parents: 6572a82
Author: scnakandala 
Authored: Wed Dec 16 22:30:40 2015 -0500
Committer: scnakandala 
Committed: Wed Dec 16 22:30:40 2015 -0500

--
 .../client/samples/DataManagerSample.java   | 68 
 .../data/manager/core/DataManagerImpl.java  |  4 +-
 .../core/data/catalog/impl/DataCatalogImpl.java | 18 +-
 .../utils/ThriftDataModelConversion.java| 16 +++--
 .../airavata/data/catalog/DataCatalogTest.java  | 32 -
 .../airavata/registry/cpi/DataCatalog.java  |  4 +-
 6 files changed, 114 insertions(+), 28 deletions(-)
--


http://git-wip-us.apache.org/repos/asf/airavata/blob/1837eea8/airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/samples/DataManagerSample.java
--
diff --git 
a/airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/samples/DataManagerSample.java
 
b/airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/samples/DataManagerSample.java
new file mode 100644
index 000..44e20cf
--- /dev/null
+++ 
b/airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/samples/DataManagerSample.java
@@ -0,0 +1,68 @@
+/*
+ *
+ * Licensed to the Apache Software Foundation (ASF) under one
+ * or more contributor license agreements.  See the NOTICE file
+ * distributed with this work for additional information
+ * regarding copyright ownership.  The ASF licenses this file
+ * to you under the Apache License, Version 2.0 (the
+ * "License"); you may not use this file except in compliance
+ * with the License.  You may obtain a copy of the License at
+ *
+ *   http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing,
+ * software distributed under the License is distributed on an
+ * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
+ * KIND, either express or implied.  See the License for the
+ * specific language governing permissions and limitations
+ * under the License.
+ *
+*/
+package org.apache.airavata.client.samples;
+
+import org.apache.airavata.api.Airavata;
+import org.apache.airavata.api.client.AiravataClientFactory;
+import org.apache.airavata.model.data.resource.DataReplicaLocationModel;
+import org.apache.airavata.model.data.resource.DataResourceModel;
+import org.apache.airavata.model.data.resource.DataResourceType;
+import org.apache.airavata.model.security.AuthzToken;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+public class DataManagerSample {
+private final static Logger logger = 
LoggerFactory.getLogger(DataManagerSample.class);
+
+public static final String THRIFT_SERVER_HOST = "gw77.iu.xsede.org";
+public static final int THRIFT_SERVER_PORT = 8930;
+private static final String USER_NAME = "master";
+private static final String DEFAULT_GATEWAY = "default";
+private static final String STORAGE_RESOURCE_ID = "";
+private static final AuthzToken authzToken = new AuthzToken("empty-token");
+private static Airavata.Client client;
+
+public static void main(String[] args) {
+try {
+client = 
AiravataClientFactory.createAiravataClient(THRIFT_SERVER_HOST, 
THRIFT_SERVER_PORT);
+System.out.println(client.getAPIVersion(authzToken));
+
+DataResourceModel dataResourceModel = new DataResourceModel();
+dataResourceModel.setGatewayId(DEFAULT_GATEWAY);
+dataResourceModel.setOwnerName(USER_NAME);
+dataResourceModel.setResourceName("test-1");
+dataResourceModel.setDataResourceType(DataResourceType.FILE);
+
+DataReplicaLocationModel replicaLocationModel = new 
DataReplicaLocationModel();
+replicaLocationModel.setStorageResourceId(STORAGE_RESOURCE_ID);
+replicaLocationModel.setFileAbsolutePath("/var/www/portal/");
+
+dataResourceModel.addToReplicaLocations(replicaLocationModel);
+
+String resourceId = client.registerDataResource(authzToken, 
dataResourceModel);
+System.out.println(resourceId);
+
+} catch (Exception e) {
+logger.error("Error while connecting with server", e.getMessage());
+

[1/2] airavata-php-gateway git commit: updating the thrift 0.9.3 generated code

[scnakandala]

Repository: airavata-php-gateway
Updated Branches:
  refs/heads/master b545744c8 -> e5e190efd


http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/blob/e5e190ef/app/libraries/Airavata/Model/Data/Resource/Types.php
--
diff --git a/app/libraries/Airavata/Model/Data/Resource/Types.php 
b/app/libraries/Airavata/Model/Data/Resource/Types.php
index 84e6c9c..cd5542a 100644
--- a/app/libraries/Airavata/Model/Data/Resource/Types.php
+++ b/app/libraries/Airavata/Model/Data/Resource/Types.php
@@ -2,7 +2,7 @@
 namespace Airavata\Model\Data\Resource;
 
 /**
- * Autogenerated by Thrift Compiler (0.9.2)
+ * Autogenerated by Thrift Compiler (0.9.3)
  *
  * DO NOT EDIT UNLESS YOU ARE SURE THAT YOU KNOW WHAT YOU ARE DOING
  *  @generated
@@ -39,6 +39,15 @@ final class ReplicaPersistentType {
   );
 }
 
+final class DataResourceType {
+  const COLLECTION = 0;
+  const FILE = 1;
+  static public $__names = array(
+0 => 'COLLECTION',
+1 => 'FILE',
+  );
+}
+
 class DataResourceModel {
   static $_TSPEC;
 
@@ -53,6 +62,10 @@ class DataResourceModel {
   /**
* @var string
*/
+  public $parentResourceId = null;
+  /**
+   * @var string
+   */
   public $resourceName = null;
   /**
* @var string
@@ -65,6 +78,10 @@ class DataResourceModel {
   /**
* @var int
*/
+  public $dataResourceType = null;
+  /**
+   * @var int
+   */
   public $resourceSize = null;
   /**
* @var int
@@ -81,7 +98,11 @@ class DataResourceModel {
   /**
* @var \Airavata\Model\Data\Resource\DataReplicaLocationModel[]
*/
-  public $dataReplicaLocations = null;
+  public $replicaLocations = null;
+  /**
+   * @var \Airavata\Model\Data\Resource\DataResourceModel[]
+   */
+  public $childResources = null;
 
   public function __construct($vals=null) {
 if (!isset(self::$_TSPEC)) {
@@ -95,30 +116,38 @@ class DataResourceModel {
   'type' => TType::STRING,
   ),
 3 => array(
-  'var' => 'resourceName',
+  'var' => 'parentResourceId',
   'type' => TType::STRING,
   ),
 4 => array(
-  'var' => 'resourceDescription',
+  'var' => 'resourceName',
   'type' => TType::STRING,
   ),
 5 => array(
-  'var' => 'ownerName',
+  'var' => 'resourceDescription',
   'type' => TType::STRING,
   ),
 6 => array(
+  'var' => 'ownerName',
+  'type' => TType::STRING,
+  ),
+7 => array(
+  'var' => 'dataResourceType',
+  'type' => TType::I32,
+  ),
+8 => array(
   'var' => 'resourceSize',
   'type' => TType::I32,
   ),
-7 => array(
+9 => array(
   'var' => 'creationTime',
   'type' => TType::I64,
   ),
-8 => array(
+10 => array(
   'var' => 'lastModifiedTime',
   'type' => TType::I64,
   ),
-9 => array(
+11 => array(
   'var' => 'resourceMetadata',
   'type' => TType::MAP,
   'ktype' => TType::STRING,
@@ -130,8 +159,8 @@ class DataResourceModel {
 'type' => TType::STRING,
 ),
   ),
-10 => array(
-  'var' => 'dataReplicaLocations',
+12 => array(
+  'var' => 'replicaLocations',
   'type' => TType::LST,
   'etype' => TType::STRUCT,
   'elem' => array(
@@ -139,6 +168,15 @@ class DataResourceModel {
 'class' => 
'\Airavata\Model\Data\Resource\DataReplicaLocationModel',
 ),
   ),
+13 => array(
+  'var' => 'childResources',
+  'type' => TType::LST,
+  'etype' => TType::STRUCT,
+  'elem' => array(
+'type' => TType::STRUCT,
+'class' => '\Airavata\Model\Data\Resource\DataResourceModel',
+),
+  ),
 );
 }
 if (is_array($vals)) {
@@ -148,6 +186,9 @@ class DataResourceModel {
   if (isset($vals['gatewayId'])) {
 $this->gatewayId = $vals['gatewayId'];
   }
+  if (isset($vals['parentResourceId'])) {
+$this->parentResourceId = $vals['parentResourceId'];
+  }
   if (isset($vals['resourceName'])) {
 $this->resourceName = $vals['resourceName'];
   }
@@ -157,6 +198,9 @@ class DataResourceModel {
   if (isset($vals['ownerName'])) {
 $this->ownerName = $vals['ownerName'];
   }
+  if (isset($vals['dataResourceType'])) {
+$this->dataResourceType = $vals['dataResourceType'];
+  }
   if (isset($vals['resourceSize'])) {
 $this->resourceSize = $vals['resourceSize'];
   }
@@ -169,8 +213,11 @@ class DataResourceModel {
   if (isset($vals['resourceMetadata'])) {
 $this->resourceMetadata = $vals['resourceMetadata'];
   }
-  if (isset($vals['dataReplicaLocations'])) {
-$this->dataReplicaLocations = 

[2/2] airavata-php-gateway git commit: updating the thrift 0.9.3 generated code

[scnakandala]

updating the thrift 0.9.3 generated code


Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo
Commit: 
http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/e5e190ef
Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/e5e190ef
Diff: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/diff/e5e190ef

Branch: refs/heads/master
Commit: e5e190efdf66f5cc11665f2f4665fedc48abb507
Parents: b545744
Author: scnakandala 
Authored: Wed Dec 16 23:01:28 2015 -0500
Committer: scnakandala 
Committed: Wed Dec 16 23:01:28 2015 -0500

--
 app/libraries/Airavata/API/Airavata.php | 1104 ++
 app/libraries/Airavata/API/Error/Types.php  |2 +-
 app/libraries/Airavata/API/Types.php|4 +-
 .../Model/AppCatalog/AppDeployment/Types.php|2 +-
 .../Model/AppCatalog/AppInterface/Types.php |2 +-
 .../Model/AppCatalog/ComputeResource/Types.php  |   11 +-
 .../Model/AppCatalog/GatewayProfile/Types.php   |2 +-
 .../Model/AppCatalog/StorageResource/Types.php  |2 +-
 .../Airavata/Model/Application/Io/Types.php |2 +-
 app/libraries/Airavata/Model/Commons/Types.php  |2 +-
 .../Airavata/Model/Data/Movement/Types.php  |2 +-
 .../Airavata/Model/Data/Resource/Types.php  |  312 +++--
 .../Airavata/Model/Experiment/Types.php |2 +-
 app/libraries/Airavata/Model/Job/Types.php  |2 +-
 .../Airavata/Model/Messaging/Event/Types.php|2 +-
 app/libraries/Airavata/Model/Process/Types.php  |2 +-
 .../Airavata/Model/Scheduling/Types.php |2 +-
 app/libraries/Airavata/Model/Security/Types.php |2 +-
 app/libraries/Airavata/Model/Status/Types.php   |2 +-
 app/libraries/Airavata/Model/Task/Types.php |2 +-
 app/libraries/Airavata/Model/Types.php  |2 +-
 .../Airavata/Model/Workspace/Types.php  |2 +-
 .../Thrift/Exception/TProtocolException.php |2 -
 .../Protocol/TBinaryProtocolAccelerated.php |   17 +-
 .../Thrift/Protocol/TCompactProtocol.php|   12 +-
 app/libraries/Thrift/Protocol/TJSONProtocol.php |4 +-
 .../Thrift/Serializer/TBinarySerializer.php |8 +-
 app/libraries/Thrift/Thrift.php |  789 +
 .../Thrift/Transport/TBufferedTransport.php |7 +-
 app/libraries/Thrift/Transport/TSocket.php  |6 +-
 app/libraries/Thrift/autoload.php   |   51 +
 31 files changed, 2011 insertions(+), 352 deletions(-)
--


http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/blob/e5e190ef/app/libraries/Airavata/API/Airavata.php
--
diff --git a/app/libraries/Airavata/API/Airavata.php 
b/app/libraries/Airavata/API/Airavata.php
index 7171104..4cc073b 100644
--- a/app/libraries/Airavata/API/Airavata.php
+++ b/app/libraries/Airavata/API/Airavata.php
@@ -1,7 +1,7 @@
 
+   * tasks -> jobs information.
* 
* @param airavataExperimentId
*The identifier for the requested experiment. This is returned during 
the create experiment step.
@@ -612,7 +824,7 @@ interface AiravataIf {
* 
* @throws org.apache.airavata.model.error.AiravataClientException
*The following list of exceptions are thrown which Airavata Client can 
take corrective actions to resolve:
-   *  
+   * 
*  UNKNOWN_GATEWAY_ID - If a Gateway is not registered with Airavata as 
a one time administrative
* step, then Airavata Registry will not have a provenance area 
setup. The client has to follow
* gateway registration steps and retry this request.
@@ -651,16 +863,21 @@ interface AiravataIf {
* @throws \Airavata\API\Error\AiravataSystemException
* @throws \Airavata\API\Error\AuthorizationException
*/
-  public function getExperiment(\Airavata\Model\Security\AuthzToken 
$authzToken, $airavataExperimentId);
+  public function 
getDetailedExperimentTree(\Airavata\Model\Security\AuthzToken $authzToken, 
$airavataExperimentId);
   /**
-   * Fetch the completed nested tree structue of previously created experiment 
metadata which includes processes ->
-   * tasks -> jobs information.
+   * Configure a previously created experiment with required inputs, 
scheduling and other quality of service
+   *   parameters. This method only updates the experiment object within the 
registry. The experiment has to be launched
+   *   to make it actionable by the server.
* 
* @param airavataExperimentId
*The identifier for the requested experiment. This is returned during 
the create experiment step.
* 
-   * @return experimentMetada
-   *   This method will return the previously stored experiment metadata.
+   * @param experimentConfigurationData
+   *The configuration 

[4/4] airavata git commit: changing the order of groupId

[scnakandala]

changing the order of groupId


Project: http://git-wip-us.apache.org/repos/asf/airavata/repo
Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/74201879
Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/74201879
Diff: http://git-wip-us.apache.org/repos/asf/airavata/diff/74201879

Branch: refs/heads/master
Commit: 74201879bd02ebf40c0f6874da42bc3df8a79817
Parents: ee8a15e
Author: scnakandala 
Authored: Thu Dec 17 00:11:36 2015 -0500
Committer: scnakandala 
Committed: Thu Dec 17 00:11:36 2015 -0500

--
 airavata-api/airavata-api-server/pom.xml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)
--


http://git-wip-us.apache.org/repos/asf/airavata/blob/74201879/airavata-api/airavata-api-server/pom.xml
--
diff --git a/airavata-api/airavata-api-server/pom.xml 
b/airavata-api/airavata-api-server/pom.xml
index 367dff6..9e3c27b 100644
--- a/airavata-api/airavata-api-server/pom.xml
+++ b/airavata-api/airavata-api-server/pom.xml
@@ -14,8 +14,8 @@
 4.0.0
 
 
-airavata-api
 org.apache.airavata
+airavata-api
 0.16-SNAPSHOT
 ../pom.xml
 

[3/4] airavata git commit: fixing test failure

[scnakandala]

fixing test failure


Project: http://git-wip-us.apache.org/repos/asf/airavata/repo
Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/ee8a15e4
Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/ee8a15e4
Diff: http://git-wip-us.apache.org/repos/asf/airavata/diff/ee8a15e4

Branch: refs/heads/master
Commit: ee8a15e4d7fad3c73fb23f70fc1c8ecf49f37c89
Parents: 3d5bf9e
Author: scnakandala 
Authored: Wed Dec 16 23:34:17 2015 -0500
Committer: scnakandala 
Committed: Wed Dec 16 23:34:17 2015 -0500

--
 airavata-api/airavata-data-models/pom.xml|  2 +-
 .../catalog/utils/ThriftDataModelConversion.java | 15 ++-
 samples/java-client/experiment/pom.xml   |  6 +++---
 3 files changed, 14 insertions(+), 9 deletions(-)
--


http://git-wip-us.apache.org/repos/asf/airavata/blob/ee8a15e4/airavata-api/airavata-data-models/pom.xml
--
diff --git a/airavata-api/airavata-data-models/pom.xml 
b/airavata-api/airavata-data-models/pom.xml
index 220ab7a..cf18efc 100644
--- a/airavata-api/airavata-data-models/pom.xml
+++ b/airavata-api/airavata-data-models/pom.xml
@@ -13,8 +13,8 @@
 4.0.0
 
 
-airavata-api
 org.apache.airavata
+airavata-api
 0.16-SNAPSHOT
 ../pom.xml
 

http://git-wip-us.apache.org/repos/asf/airavata/blob/ee8a15e4/modules/registry/registry-core/src/main/java/org/apache/airavata/registry/core/data/catalog/utils/ThriftDataModelConversion.java
--
diff --git 
a/modules/registry/registry-core/src/main/java/org/apache/airavata/registry/core/data/catalog/utils/ThriftDataModelConversion.java
 
b/modules/registry/registry-core/src/main/java/org/apache/airavata/registry/core/data/catalog/utils/ThriftDataModelConversion.java
index 3ea4dad..7f358fe 100644
--- 
a/modules/registry/registry-core/src/main/java/org/apache/airavata/registry/core/data/catalog/utils/ThriftDataModelConversion.java
+++ 
b/modules/registry/registry-core/src/main/java/org/apache/airavata/registry/core/data/catalog/utils/ThriftDataModelConversion.java
@@ -53,8 +53,10 @@ public class ThriftDataModelConversion {
 
dataResourceModel.setResourceDescription(dataResource.getResourceDescription());
 dataResourceModel.setOwnerName(dataResource.getOwnerName());
 dataResourceModel.setResourceSize(dataResource.getResourceSize());
-
dataResourceModel.setCreationTime(dataResource.getCreationTime().getTime());
-
dataResourceModel.setLastModifiedTime(dataResource.getLastModifiedTime().getTime());
+if(dataResource.getCreationTime() != null)
+
dataResourceModel.setCreationTime(dataResource.getCreationTime().getTime());
+if(dataResource.getLastModifiedTime() != null)
+
dataResourceModel.setLastModifiedTime(dataResource.getLastModifiedTime().getTime());
 
dataResourceModel.setResourceMetadata(getResourceMetaData(dataResource.getDataResourceMetaData()));
 if(dataResource.getDataReplicaLocations() != null){
 ArrayList dataReplicaLocationModels 
= new ArrayList<>();
@@ -133,10 +135,13 @@ public class ThriftDataModelConversion {
 
replicaLocationModel.setReplicaName(replicaLocation.getReplicaName());
 
replicaLocationModel.setReplicaDescription(replicaLocation.getReplicaDescription());
 
replicaLocationModel.setStorageResourceId(replicaLocation.getStorageResourceId());
-
replicaLocationModel.setValidUntilTime(replicaLocation.getValidUntilTime().getTime());
+if(replicaLocation.getValidUntilTime() != null)
+
replicaLocationModel.setValidUntilTime(replicaLocation.getValidUntilTime().getTime());
 
replicaLocationModel.setFileAbsolutePath(replicaLocation.getFileAbsolutePath());
-
replicaLocationModel.setCreationTime(replicaLocation.getCreationTime().getTime());
-
replicaLocationModel.setLastModifiedTime(replicaLocation.getLastModifiedTime().getTime());
+if(replicaLocation.getCreationTime() != null)
+
replicaLocationModel.setCreationTime(replicaLocation.getCreationTime().getTime());
+if(replicaLocation.getLastModifiedTime() != null)
+
replicaLocationModel.setLastModifiedTime(replicaLocation.getLastModifiedTime().getTime());
 if(replicaLocation.getReplicaLocationCategory() != null)
 
replicaLocationModel.setReplicaLocationCategory(ReplicaLocationCategory.valueOf(replicaLocation
 .getReplicaLocationCategory().toString()));

[2/4] airavata git commit: changes to the validUntil time

[scnakandala]

changes to the validUntil time


Project: http://git-wip-us.apache.org/repos/asf/airavata/repo
Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/3d5bf9ee
Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/3d5bf9ee
Diff: http://git-wip-us.apache.org/repos/asf/airavata/diff/3d5bf9ee

Branch: refs/heads/master
Commit: 3d5bf9eeacdc2dacf0b9425e555eade954c18314
Parents: fd62b23
Author: scnakandala 
Authored: Wed Dec 16 22:45:30 2015 -0500
Committer: scnakandala 
Committed: Wed Dec 16 22:45:30 2015 -0500

--
 .../org/apache/airavata/client/samples/DataManagerSample.java | 7 ---
 .../registry/core/data/catalog/impl/DataCatalogImpl.java  | 6 --
 2 files changed, 4 insertions(+), 9 deletions(-)
--


http://git-wip-us.apache.org/repos/asf/airavata/blob/3d5bf9ee/airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/samples/DataManagerSample.java
--
diff --git 
a/airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/samples/DataManagerSample.java
 
b/airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/samples/DataManagerSample.java
index 44e20cf..c417f31 100644
--- 
a/airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/samples/DataManagerSample.java
+++ 
b/airavata-api/airavata-client-sdks/java-client-samples/src/main/java/org/apache/airavata/client/samples/DataManagerSample.java
@@ -22,9 +22,7 @@ package org.apache.airavata.client.samples;
 
 import org.apache.airavata.api.Airavata;
 import org.apache.airavata.api.client.AiravataClientFactory;
-import org.apache.airavata.model.data.resource.DataReplicaLocationModel;
-import org.apache.airavata.model.data.resource.DataResourceModel;
-import org.apache.airavata.model.data.resource.DataResourceType;
+import org.apache.airavata.model.data.resource.*;
 import org.apache.airavata.model.security.AuthzToken;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;
@@ -53,6 +51,9 @@ public class DataManagerSample {
 
 DataReplicaLocationModel replicaLocationModel = new 
DataReplicaLocationModel();
 replicaLocationModel.setStorageResourceId(STORAGE_RESOURCE_ID);
+replicaLocationModel.setReplicaName("test-1-replica-1");
+
replicaLocationModel.setReplicaLocationCategory(ReplicaLocationCategory.GATEWAY_DATA_STORE);
+
replicaLocationModel.setReplicaPersistentType(ReplicaPersistentType.PERSISTENT);
 replicaLocationModel.setFileAbsolutePath("/var/www/portal/");
 
 dataResourceModel.addToReplicaLocations(replicaLocationModel);

http://git-wip-us.apache.org/repos/asf/airavata/blob/3d5bf9ee/modules/registry/registry-core/src/main/java/org/apache/airavata/registry/core/data/catalog/impl/DataCatalogImpl.java
--
diff --git 
a/modules/registry/registry-core/src/main/java/org/apache/airavata/registry/core/data/catalog/impl/DataCatalogImpl.java
 
b/modules/registry/registry-core/src/main/java/org/apache/airavata/registry/core/data/catalog/impl/DataCatalogImpl.java
index 91e3ce5..f596980 100644
--- 
a/modules/registry/registry-core/src/main/java/org/apache/airavata/registry/core/data/catalog/impl/DataCatalogImpl.java
+++ 
b/modules/registry/registry-core/src/main/java/org/apache/airavata/registry/core/data/catalog/impl/DataCatalogImpl.java
@@ -41,8 +41,6 @@ public class DataCatalogImpl implements DataCatalog {
 
 private final static Logger logger = 
LoggerFactory.getLogger(DataCatalogImpl.class);
 
-private final static long DEFAULT_REPLICA_VALID_TIME = 1000 * 60 * 60 * 24 
* 365 * 10;
-
 @Override
 public String registerResource(DataResourceModel resourceModel) throws 
DataCatalogException {
 String resourceId = UUID.randomUUID().toString();
@@ -56,8 +54,6 @@ public class DataCatalogImpl implements DataCatalog {
 r.setReplicaId(UUID.randomUUID().toString());
 r.setCreationTime(currentTime);
 r.setLastModifiedTime(currentTime);
-if(r.getValidUntilTime() <= 0)
-r.setValidUntilTime(currentTime + 
DEFAULT_REPLICA_VALID_TIME);
 });
 }
 resourceModel.setCreationTime(System.currentTimeMillis());
@@ -165,8 +161,6 @@ public class DataCatalogImpl implements DataCatalog {
 long currentTime = System.currentTimeMillis();
 dataReplicaLocationModel.setCreationTime(currentTime);
 dataReplicaLocationModel.setLastModifiedTime(currentTime);
-if(dataReplicaLocationModel.getValidUntilTime() <= 0)
-

[1/4] airavata git commit: changing the mysql script

[scnakandala]

Repository: airavata
Updated Branches:
  refs/heads/master 1837eea8c -> 74201879b


changing the mysql script


Project: http://git-wip-us.apache.org/repos/asf/airavata/repo
Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/fd62b238
Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/fd62b238
Diff: http://git-wip-us.apache.org/repos/asf/airavata/diff/fd62b238

Branch: refs/heads/master
Commit: fd62b238e14bb769c887121731f4f39b0777527e
Parents: 1837eea
Author: scnakandala 
Authored: Wed Dec 16 22:42:54 2015 -0500
Committer: scnakandala 
Committed: Wed Dec 16 22:42:54 2015 -0500

--
 .../registry/core/data/catalog/impl/DataCatalogImpl.java  |  2 +-
 .../src/main/resources/datacatalog-mysql.sql  | 10 +-
 2 files changed, 6 insertions(+), 6 deletions(-)
--


http://git-wip-us.apache.org/repos/asf/airavata/blob/fd62b238/modules/registry/registry-core/src/main/java/org/apache/airavata/registry/core/data/catalog/impl/DataCatalogImpl.java
--
diff --git 
a/modules/registry/registry-core/src/main/java/org/apache/airavata/registry/core/data/catalog/impl/DataCatalogImpl.java
 
b/modules/registry/registry-core/src/main/java/org/apache/airavata/registry/core/data/catalog/impl/DataCatalogImpl.java
index 0957709..91e3ce5 100644
--- 
a/modules/registry/registry-core/src/main/java/org/apache/airavata/registry/core/data/catalog/impl/DataCatalogImpl.java
+++ 
b/modules/registry/registry-core/src/main/java/org/apache/airavata/registry/core/data/catalog/impl/DataCatalogImpl.java
@@ -41,7 +41,7 @@ public class DataCatalogImpl implements DataCatalog {
 
 private final static Logger logger = 
LoggerFactory.getLogger(DataCatalogImpl.class);
 
-private final static long DEFAULT_REPLICA_VALID_TIME = 1000 * 60 * 60 * 24 
* 365 + 10;
+private final static long DEFAULT_REPLICA_VALID_TIME = 1000 * 60 * 60 * 24 
* 365 * 10;
 
 @Override
 public String registerResource(DataResourceModel resourceModel) throws 
DataCatalogException {

http://git-wip-us.apache.org/repos/asf/airavata/blob/fd62b238/modules/registry/registry-core/src/main/resources/datacatalog-mysql.sql
--
diff --git 
a/modules/registry/registry-core/src/main/resources/datacatalog-mysql.sql 
b/modules/registry/registry-core/src/main/resources/datacatalog-mysql.sql
index 7bff542..cb10b5b 100644
--- a/modules/registry/registry-core/src/main/resources/datacatalog-mysql.sql
+++ b/modules/registry/registry-core/src/main/resources/datacatalog-mysql.sql
@@ -28,8 +28,8 @@ CREATE TABLE DATA_RESOURCE
 OWNER_NAME VARCHAR (255),
 PARENT_RESOURCE_ID VARCHAR (255),
 RESOURCE_SIZE INT,
-CREATION_TIME TIMESTAMP,
-LAST_MODIFIED_TIME TIMESTAMP,
+CREATION_TIME TIMESTAMP DEFAULT NULL,
+LAST_MODIFIED_TIME TIMESTAMP DEFAULT CURRENT_TIMESTAMP ON UPDATE 
CURRENT_TIMESTAMP ,
 PRIMARY KEY (RESOURCE_ID)
 );
 
@@ -41,9 +41,9 @@ CREATE TABLE DATA_REPLICA_LOCATION
 REPLICA_DESCRIPTION VARCHAR (1024),
 STORAGE_RESOURCE_ID VARCHAR (255),
 FILE_ABSOLUTE_PATH VARCHAR (4096),
-CREATION_TIME TIMESTAMP,
-LAST_MODIFIED_TIME TIMESTAMP,
-VALID_UNTIL_TIME TIMESTAMP,
+CREATION_TIME TIMESTAMP DEFAULT NULL,
+LAST_MODIFIED_TIME TIMESTAMP DEFAULT CURRENT_TIMESTAMP ON UPDATE 
CURRENT_TIMESTAMP ,
+VALID_UNTIL_TIME TIMESTAMP DEFAULT NULL,
 PRIMARY KEY (REPLICA_ID),
 FOREIGN KEY (RESOURCE_ID) REFERENCES DATA_RESOURCE(RESOURCE_ID) ON 
DELETE CASCADE
 );

[09/13] airavata git commit: reverting the generated classes to 0.9.2 as the tests did not pass - AIRAVATA-1883

[smarru]

http://git-wip-us.apache.org/repos/asf/airavata/blob/52f18ba6/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/application_interface_model_types.h
--
diff --git 
a/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/application_interface_model_types.h
 
b/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/application_interface_model_types.h
index adafa82..cdf8fa3 100644
--- 
a/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/application_interface_model_types.h
+++ 
b/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/application_interface_model_types.h
@@ -16,7 +16,7 @@
  */
 
 /**
- * Autogenerated by Thrift Compiler (0.9.3)
+ * Autogenerated by Thrift Compiler (0.9.2)
  *
  * DO NOT EDIT UNLESS YOU ARE SURE THAT YOU KNOW WHAT YOU ARE DOING
  *  @generated
@@ -51,6 +51,9 @@ typedef struct _ApplicationInterfaceDescription__isset {
 class ApplicationInterfaceDescription {
  public:
 
+  static const char* ascii_fingerprint; // = 
"D41488A7C34E28C6E04EA596F09A1F6C";
+  static const uint8_t binary_fingerprint[16]; // = 
{0xD4,0x14,0x88,0xA7,0xC3,0x4E,0x28,0xC6,0xE0,0x4E,0xA5,0x96,0xF0,0x9A,0x1F,0x6C};
+
   ApplicationInterfaceDescription(const ApplicationInterfaceDescription&);
   ApplicationInterfaceDescription& operator=(const 
ApplicationInterfaceDescription&);
   ApplicationInterfaceDescription() : 
applicationInterfaceId("DO_NOT_SET_AT_CLIENTS"), applicationName(), 
applicationDescription() {
@@ -111,17 +114,11 @@ class ApplicationInterfaceDescription {
   uint32_t read(::apache::thrift::protocol::TProtocol* iprot);
   uint32_t write(::apache::thrift::protocol::TProtocol* oprot) const;
 
-  virtual void printTo(std::ostream& out) const;
+  friend std::ostream& operator<<(std::ostream& out, const 
ApplicationInterfaceDescription& obj);
 };
 
 void swap(ApplicationInterfaceDescription , ApplicationInterfaceDescription 
);
 
-inline std::ostream& operator<<(std::ostream& out, const 
ApplicationInterfaceDescription& obj)
-{
-  obj.printTo(out);
-  return out;
-}
-
 } // namespace
 
 #endif

http://git-wip-us.apache.org/repos/asf/airavata/blob/52f18ba6/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/application_io_models_constants.cpp
--
diff --git 
a/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/application_io_models_constants.cpp
 
b/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/application_io_models_constants.cpp
index bdf3e7c..16c91d6 100644
--- 
a/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/application_io_models_constants.cpp
+++ 
b/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/application_io_models_constants.cpp
@@ -16,7 +16,7 @@
  */
 
 /**
- * Autogenerated by Thrift Compiler (0.9.3)
+ * Autogenerated by Thrift Compiler (0.9.2)
  *
  * DO NOT EDIT UNLESS YOU ARE SURE THAT YOU KNOW WHAT YOU ARE DOING
  *  @generated

http://git-wip-us.apache.org/repos/asf/airavata/blob/52f18ba6/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/application_io_models_constants.h
--
diff --git 
a/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/application_io_models_constants.h
 
b/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/application_io_models_constants.h
index 7181ead..67902c9 100644
--- 
a/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/application_io_models_constants.h
+++ 
b/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/application_io_models_constants.h
@@ -16,7 +16,7 @@
  */
 
 /**
- * Autogenerated by Thrift Compiler (0.9.3)
+ * Autogenerated by Thrift Compiler (0.9.2)
  *
  * DO NOT EDIT UNLESS YOU ARE SURE THAT YOU KNOW WHAT YOU ARE DOING
  *  @generated

http://git-wip-us.apache.org/repos/asf/airavata/blob/52f18ba6/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/application_io_models_types.cpp
--
diff --git 
a/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/application_io_models_types.cpp
 
b/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/application_io_models_types.cpp
index 0604770..75476f8 100644
--- 
a/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/application_io_models_types.cpp
+++ 

[13/13] airavata git commit: reverting the generated classes to 0.9.2 as the tests did not pass - AIRAVATA-1883

[smarru]

reverting the generated classes to 0.9.2 as the tests did not pass - 
AIRAVATA-1883


Project: http://git-wip-us.apache.org/repos/asf/airavata/repo
Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/52f18ba6
Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/52f18ba6
Diff: http://git-wip-us.apache.org/repos/asf/airavata/diff/52f18ba6

Branch: refs/heads/master
Commit: 52f18ba682f3255fa67c13e75e7c53375425779e
Parents: 7420187
Author: smarru 
Authored: Thu Dec 17 00:48:25 2015 -0500
Committer: smarru 
Committed: Thu Dec 17 00:48:25 2015 -0500

--
 .../java/org/apache/airavata/api/Airavata.java  |   162 +-
 .../airavata/api/airavata_apiConstants.java | 2 +-
 .../main/resources/lib/airavata/Airavata.cpp| 15139 +
 .../src/main/resources/lib/airavata/Airavata.h  |  2651 ++-
 .../lib/airavata/airavata_api_constants.cpp | 2 +-
 .../lib/airavata/airavata_api_constants.h   | 2 +-
 .../lib/airavata/airavata_api_types.cpp | 2 +-
 .../resources/lib/airavata/airavata_api_types.h | 2 +-
 .../lib/airavata/airavata_commons_constants.cpp | 2 +-
 .../lib/airavata/airavata_commons_constants.h   | 2 +-
 .../lib/airavata/airavata_commons_types.cpp |58 +-
 .../lib/airavata/airavata_commons_types.h   |35 +-
 .../airavata/airavata_data_models_constants.cpp | 2 +-
 .../airavata/airavata_data_models_constants.h   | 2 +-
 .../lib/airavata/airavata_data_models_types.cpp | 2 +-
 .../lib/airavata/airavata_data_models_types.h   | 2 +-
 .../lib/airavata/airavata_errors_constants.cpp  | 2 +-
 .../lib/airavata/airavata_errors_constants.h| 2 +-
 .../lib/airavata/airavata_errors_types.cpp  |   264 +-
 .../lib/airavata/airavata_errors_types.h|   141 +-
 .../application_deployment_model_constants.cpp  | 2 +-
 .../application_deployment_model_constants.h| 2 +-
 .../application_deployment_model_types.cpp  |92 +-
 .../application_deployment_model_types.h|46 +-
 .../application_interface_model_constants.cpp   | 2 +-
 .../application_interface_model_constants.h | 2 +-
 .../application_interface_model_types.cpp   |26 +-
 .../application_interface_model_types.h |13 +-
 .../application_io_models_constants.cpp | 2 +-
 .../airavata/application_io_models_constants.h  | 2 +-
 .../airavata/application_io_models_types.cpp|68 +-
 .../lib/airavata/application_io_models_types.h  |24 +-
 .../compute_resource_model_constants.cpp| 2 +-
 .../airavata/compute_resource_model_constants.h | 2 +-
 .../airavata/compute_resource_model_types.cpp   |   206 +-
 .../lib/airavata/compute_resource_model_types.h |   101 +-
 .../airavata/data_movement_models_constants.cpp | 2 +-
 .../airavata/data_movement_models_constants.h   | 2 +-
 .../lib/airavata/data_movement_models_types.cpp |90 +-
 .../lib/airavata/data_movement_models_types.h   |57 +-
 .../lib/airavata/experiment_model_constants.cpp | 2 +-
 .../lib/airavata/experiment_model_constants.h   | 2 +-
 .../lib/airavata/experiment_model_types.cpp |   148 +-
 .../lib/airavata/experiment_model_types.h   |46 +-
 ...gateway_resource_profile_model_constants.cpp | 2 +-
 .../gateway_resource_profile_model_constants.h  | 2 +-
 .../gateway_resource_profile_model_types.cpp|72 +-
 .../gateway_resource_profile_model_types.h  |35 +-
 .../lib/airavata/job_model_constants.cpp| 2 +-
 .../lib/airavata/job_model_constants.h  | 2 +-
 .../resources/lib/airavata/job_model_types.cpp  |38 +-
 .../resources/lib/airavata/job_model_types.h|13 +-
 .../lib/airavata/messaging_events_constants.cpp | 2 +-
 .../lib/airavata/messaging_events_constants.h   | 2 +-
 .../lib/airavata/messaging_events_types.cpp |   252 +-
 .../lib/airavata/messaging_events_types.h   |   156 +-
 .../lib/airavata/process_model_constants.cpp| 2 +-
 .../lib/airavata/process_model_constants.h  | 2 +-
 .../lib/airavata/process_model_types.cpp|56 +-
 .../lib/airavata/process_model_types.h  |13 +-
 .../replica_catalog_models_constants.cpp| 2 +-
 .../airavata/replica_catalog_models_constants.h | 2 +-
 .../airavata/replica_catalog_models_types.cpp   |76 +-
 .../lib/airavata/replica_catalog_models_types.h |24 +-
 .../lib/airavata/scheduling_model_constants.cpp | 2 +-
 .../lib/airavata/scheduling_model_constants.h   | 2 +-
 .../lib/airavata/scheduling_model_types.cpp |32 +-
 .../lib/airavata/scheduling_model_types.h   |13 +-
 .../lib/airavata/security_model_constants.cpp   | 2 +-
 .../lib/airavata/security_model_constants.h | 2 +-
 .../lib/airavata/security_model_types.cpp   |18 +-
 .../lib/airavata/security_model_types.h  

[04/13] airavata git commit: reverting the generated classes to 0.9.2 as the tests did not pass - AIRAVATA-1883

[smarru]

http://git-wip-us.apache.org/repos/asf/airavata/blob/52f18ba6/airavata-api/airavata-client-sdks/airavata-python-sdk/src/main/resources/lib/apache/airavata/api/constants.py
--
diff --git 
a/airavata-api/airavata-client-sdks/airavata-python-sdk/src/main/resources/lib/apache/airavata/api/constants.py
 
b/airavata-api/airavata-client-sdks/airavata-python-sdk/src/main/resources/lib/apache/airavata/api/constants.py
index fc60574..ae922f1 100644
--- 
a/airavata-api/airavata-client-sdks/airavata-python-sdk/src/main/resources/lib/apache/airavata/api/constants.py
+++ 
b/airavata-api/airavata-client-sdks/airavata-python-sdk/src/main/resources/lib/apache/airavata/api/constants.py
@@ -1,5 +1,5 @@
 #
-# Autogenerated by Thrift Compiler (0.9.3)
+# Autogenerated by Thrift Compiler (0.9.2)
 #
 # DO NOT EDIT UNLESS YOU ARE SURE THAT YOU KNOW WHAT YOU ARE DOING
 #

http://git-wip-us.apache.org/repos/asf/airavata/blob/52f18ba6/airavata-api/airavata-client-sdks/airavata-python-sdk/src/main/resources/lib/apache/airavata/api/error/constants.py
--
diff --git 
a/airavata-api/airavata-client-sdks/airavata-python-sdk/src/main/resources/lib/apache/airavata/api/error/constants.py
 
b/airavata-api/airavata-client-sdks/airavata-python-sdk/src/main/resources/lib/apache/airavata/api/error/constants.py
index 4a6492b..99717a9 100644
--- 
a/airavata-api/airavata-client-sdks/airavata-python-sdk/src/main/resources/lib/apache/airavata/api/error/constants.py
+++ 
b/airavata-api/airavata-client-sdks/airavata-python-sdk/src/main/resources/lib/apache/airavata/api/error/constants.py
@@ -1,5 +1,5 @@
 #
-# Autogenerated by Thrift Compiler (0.9.3)
+# Autogenerated by Thrift Compiler (0.9.2)
 #
 # DO NOT EDIT UNLESS YOU ARE SURE THAT YOU KNOW WHAT YOU ARE DOING
 #

http://git-wip-us.apache.org/repos/asf/airavata/blob/52f18ba6/airavata-api/airavata-client-sdks/airavata-python-sdk/src/main/resources/lib/apache/airavata/api/error/ttypes.py
--
diff --git 
a/airavata-api/airavata-client-sdks/airavata-python-sdk/src/main/resources/lib/apache/airavata/api/error/ttypes.py
 
b/airavata-api/airavata-client-sdks/airavata-python-sdk/src/main/resources/lib/apache/airavata/api/error/ttypes.py
index 522cc18..130eef5 100644
--- 
a/airavata-api/airavata-client-sdks/airavata-python-sdk/src/main/resources/lib/apache/airavata/api/error/ttypes.py
+++ 
b/airavata-api/airavata-client-sdks/airavata-python-sdk/src/main/resources/lib/apache/airavata/api/error/ttypes.py
@@ -1,5 +1,5 @@
 #
-# Autogenerated by Thrift Compiler (0.9.3)
+# Autogenerated by Thrift Compiler (0.9.2)
 #
 # DO NOT EDIT UNLESS YOU ARE SURE THAT YOU KNOW WHAT YOU ARE DOING
 #
@@ -101,7 +101,7 @@ class ExperimentNotFoundException(TException):
 break
   if fid == 1:
 if ftype == TType.STRING:
-  self.message = iprot.readString()
+  self.message = iprot.readString();
 else:
   iprot.skip(ftype)
   else:
@@ -175,7 +175,7 @@ class ProjectNotFoundException(TException):
 break
   if fid == 1:
 if ftype == TType.STRING:
-  self.message = iprot.readString()
+  self.message = iprot.readString();
 else:
   iprot.skip(ftype)
   else:
@@ -250,7 +250,7 @@ class InvalidRequestException(TException):
 break
   if fid == 1:
 if ftype == TType.STRING:
-  self.message = iprot.readString()
+  self.message = iprot.readString();
 else:
   iprot.skip(ftype)
   else:
@@ -376,7 +376,7 @@ class AuthenticationException(TException):
 break
   if fid == 1:
 if ftype == TType.STRING:
-  self.message = iprot.readString()
+  self.message = iprot.readString();
 else:
   iprot.skip(ftype)
   else:
@@ -450,7 +450,7 @@ class AuthorizationException(TException):
 break
   if fid == 1:
 if ftype == TType.STRING:
-  self.message = iprot.readString()
+  self.message = iprot.readString();
 else:
   iprot.skip(ftype)
   else:
@@ -537,12 +537,12 @@ class AiravataClientException(TException):
 break
   if fid == 1:
 if ftype == TType.I32:
-  self.airavataErrorType = iprot.readI32()
+  self.airavataErrorType = iprot.readI32();
 else:
   iprot.skip(ftype)
   elif fid == 2:
 if ftype == TType.STRING:
-  self.parameter = iprot.readString()
+  self.parameter = iprot.readString();
 else:
   iprot.skip(ftype)
   else:
@@ -620,12 +620,12 @@ class ValidatorResult:
 break
   if fid == 1:
 if ftype == TType.BOOL:
-  self.result = iprot.readBool()
+  self.result = iprot.readBool();
 else:
   iprot.skip(ftype)
   elif fid == 2:
 

[08/13] airavata git commit: reverting the generated classes to 0.9.2 as the tests did not pass - AIRAVATA-1883

[smarru]

http://git-wip-us.apache.org/repos/asf/airavata/blob/52f18ba6/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/experiment_model_types.cpp
--
diff --git 
a/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/experiment_model_types.cpp
 
b/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/experiment_model_types.cpp
index 1a756ac..71ad4ea 100644
--- 
a/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/experiment_model_types.cpp
+++ 
b/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/experiment_model_types.cpp
@@ -16,7 +16,7 @@
  */
 
 /**
- * Autogenerated by Thrift Compiler (0.9.3)
+ * Autogenerated by Thrift Compiler (0.9.2)
  *
  * DO NOT EDIT UNLESS YOU ARE SURE THAT YOU KNOW WHAT YOU ARE DOING
  *  @generated
@@ -103,9 +103,11 @@ void UserConfigurationDataModel::__set_storageId(const 
std::string& val) {
 __isset.storageId = true;
 }
 
+const char* UserConfigurationDataModel::ascii_fingerprint = 
"9CA6AB92C690C796BF5375F505933922";
+const uint8_t UserConfigurationDataModel::binary_fingerprint[16] = 
{0x9C,0xA6,0xAB,0x92,0xC6,0x90,0xC7,0x96,0xBF,0x53,0x75,0xF5,0x05,0x93,0x39,0x22};
+
 uint32_t 
UserConfigurationDataModel::read(::apache::thrift::protocol::TProtocol* iprot) {
 
-  apache::thrift::protocol::TInputRecursionTracker tracker(*iprot);
   uint32_t xfer = 0;
   std::string fname;
   ::apache::thrift::protocol::TType ftype;
@@ -208,7 +210,7 @@ uint32_t 
UserConfigurationDataModel::read(::apache::thrift::protocol::TProtocol*
 
 uint32_t 
UserConfigurationDataModel::write(::apache::thrift::protocol::TProtocol* oprot) 
const {
   uint32_t xfer = 0;
-  apache::thrift::protocol::TOutputRecursionTracker tracker(*oprot);
+  oprot->incrementRecursionDepth();
   xfer += oprot->writeStructBegin("UserConfigurationDataModel");
 
   xfer += oprot->writeFieldBegin("airavataAutoSchedule", 
::apache::thrift::protocol::T_BOOL, 1);
@@ -251,6 +253,7 @@ uint32_t 
UserConfigurationDataModel::write(::apache::thrift::protocol::TProtocol
   }
   xfer += oprot->writeFieldStop();
   xfer += oprot->writeStructEnd();
+  oprot->decrementRecursionDepth();
   return xfer;
 }
 
@@ -290,18 +293,19 @@ UserConfigurationDataModel& 
UserConfigurationDataModel::operator=(const UserConf
   __isset = other1.__isset;
   return *this;
 }
-void UserConfigurationDataModel::printTo(std::ostream& out) const {
-  using ::apache::thrift::to_string;
+std::ostream& operator<<(std::ostream& out, const UserConfigurationDataModel& 
obj) {
+  using apache::thrift::to_string;
   out << "UserConfigurationDataModel(";
-  out << "airavataAutoSchedule=" << to_string(airavataAutoSchedule);
-  out << ", " << "overrideManualScheduledParams=" << 
to_string(overrideManualScheduledParams);
-  out << ", " << "shareExperimentPublicly="; (__isset.shareExperimentPublicly 
? (out << to_string(shareExperimentPublicly)) : (out << ""));
-  out << ", " << "computationalResourceScheduling="; 
(__isset.computationalResourceScheduling ? (out << 
to_string(computationalResourceScheduling)) : (out << ""));
-  out << ", " << "throttleResources="; (__isset.throttleResources ? (out << 
to_string(throttleResources)) : (out << ""));
-  out << ", " << "userDN="; (__isset.userDN ? (out << to_string(userDN)) : 
(out << ""));
-  out << ", " << "generateCert="; (__isset.generateCert ? (out << 
to_string(generateCert)) : (out << ""));
-  out << ", " << "storageId="; (__isset.storageId ? (out << 
to_string(storageId)) : (out << ""));
+  out << "airavataAutoSchedule=" << to_string(obj.airavataAutoSchedule);
+  out << ", " << "overrideManualScheduledParams=" << 
to_string(obj.overrideManualScheduledParams);
+  out << ", " << "shareExperimentPublicly="; 
(obj.__isset.shareExperimentPublicly ? (out << 
to_string(obj.shareExperimentPublicly)) : (out << ""));
+  out << ", " << "computationalResourceScheduling="; 
(obj.__isset.computationalResourceScheduling ? (out << 
to_string(obj.computationalResourceScheduling)) : (out << ""));
+  out << ", " << "throttleResources="; (obj.__isset.throttleResources ? (out 
<< to_string(obj.throttleResources)) : (out << ""));
+  out << ", " << "userDN="; (obj.__isset.userDN ? (out << 
to_string(obj.userDN)) : (out << ""));
+  out << ", " << "generateCert="; (obj.__isset.generateCert ? (out << 
to_string(obj.generateCert)) : (out << ""));
+  out << ", " << "storageId="; (obj.__isset.storageId ? (out << 
to_string(obj.storageId)) : (out << ""));
   out << ")";
+  return out;
 }
 
 
@@ -393,9 +397,11 @@ void ExperimentModel::__set_processes(const std::vector< 
::apache::airavata::mod
 __isset.processes = true;
 }
 
+const char* ExperimentModel::ascii_fingerprint = 
"24797EBC0AAED86B273BC8D2768E5A7B";
+const uint8_t ExperimentModel::binary_fingerprint[16] = 

[05/13] airavata git commit: reverting the generated classes to 0.9.2 as the tests did not pass - AIRAVATA-1883

[smarru]

http://git-wip-us.apache.org/repos/asf/airavata/blob/52f18ba6/airavata-api/airavata-client-sdks/airavata-python-sdk/src/main/resources/lib/apache/airavata/api/Airavata.py
--
diff --git 
a/airavata-api/airavata-client-sdks/airavata-python-sdk/src/main/resources/lib/apache/airavata/api/Airavata.py
 
b/airavata-api/airavata-client-sdks/airavata-python-sdk/src/main/resources/lib/apache/airavata/api/Airavata.py
index 81d711f..ec02e28 100644
--- 
a/airavata-api/airavata-client-sdks/airavata-python-sdk/src/main/resources/lib/apache/airavata/api/Airavata.py
+++ 
b/airavata-api/airavata-client-sdks/airavata-python-sdk/src/main/resources/lib/apache/airavata/api/Airavata.py
@@ -1,5 +1,5 @@
 #
-# Autogenerated by Thrift Compiler (0.9.3)
+# Autogenerated by Thrift Compiler (0.9.2)
 #
 # DO NOT EDIT UNLESS YOU ARE SURE THAT YOU KNOW WHAT YOU ARE DOING
 #
@@ -7,7 +7,6 @@
 #
 
 from thrift.Thrift import TType, TMessageType, TException, 
TApplicationException
-import logging
 from ttypes import *
 from thrift.Thrift import TProcessor
 from thrift.transport import TTransport
@@ -2716,7 +2715,7 @@ class Client(Iface):
   raise result.ase
 if result.ae is not None:
   raise result.ae
-raise TApplicationException(TApplicationException.MISSING_RESULT, 
"getAPIVersion failed: unknown result")
+raise TApplicationException(TApplicationException.MISSING_RESULT, 
"getAPIVersion failed: unknown result");
 
   def addGateway(self, authzToken, gateway):
 """
@@ -2767,7 +2766,7 @@ class Client(Iface):
   raise result.ase
 if result.ae is not None:
   raise result.ae
-raise TApplicationException(TApplicationException.MISSING_RESULT, 
"addGateway failed: unknown result")
+raise TApplicationException(TApplicationException.MISSING_RESULT, 
"addGateway failed: unknown result");
 
   def updateGateway(self, authzToken, gatewayId, updatedGateway):
 """
@@ -2871,7 +2870,7 @@ class Client(Iface):
   raise result.ase
 if result.ae is not None:
   raise result.ae
-raise TApplicationException(TApplicationException.MISSING_RESULT, 
"getGateway failed: unknown result")
+raise TApplicationException(TApplicationException.MISSING_RESULT, 
"getGateway failed: unknown result");
 
   def deleteGateway(self, authzToken, gatewayId):
 """
@@ -2922,7 +2921,7 @@ class Client(Iface):
   raise result.ase
 if result.ae is not None:
   raise result.ae
-raise TApplicationException(TApplicationException.MISSING_RESULT, 
"deleteGateway failed: unknown result")
+raise TApplicationException(TApplicationException.MISSING_RESULT, 
"deleteGateway failed: unknown result");
 
   def getAllGateways(self, authzToken):
 """
@@ -2964,7 +2963,7 @@ class Client(Iface):
   raise result.ase
 if result.ae is not None:
   raise result.ae
-raise TApplicationException(TApplicationException.MISSING_RESULT, 
"getAllGateways failed: unknown result")
+raise TApplicationException(TApplicationException.MISSING_RESULT, 
"getAllGateways failed: unknown result");
 
   def isGatewayExist(self, authzToken, gatewayId):
 """
@@ -3018,7 +3017,7 @@ class Client(Iface):
   raise result.ase
 if result.ae is not None:
   raise result.ae
-raise TApplicationException(TApplicationException.MISSING_RESULT, 
"isGatewayExist failed: unknown result")
+raise TApplicationException(TApplicationException.MISSING_RESULT, 
"isGatewayExist failed: unknown result");
 
   def generateAndRegisterSSHKeys(self, authzToken, gatewayId, userName):
 """
@@ -3074,7 +3073,7 @@ class Client(Iface):
   raise result.ace
 if result.ase is not None:
   raise result.ase
-raise TApplicationException(TApplicationException.MISSING_RESULT, 
"generateAndRegisterSSHKeys failed: unknown result")
+raise TApplicationException(TApplicationException.MISSING_RESULT, 
"generateAndRegisterSSHKeys failed: unknown result");
 
   def getSSHPubKey(self, authzToken, airavataCredStoreToken, gatewayId):
 """
@@ -3127,7 +3126,7 @@ class Client(Iface):
   raise result.ace
 if result.ase is not None:
   raise result.ase
-raise TApplicationException(TApplicationException.MISSING_RESULT, 
"getSSHPubKey failed: unknown result")
+raise TApplicationException(TApplicationException.MISSING_RESULT, 
"getSSHPubKey failed: unknown result");
 
   def getAllUserSSHPubKeys(self, authzToken, userName):
 """
@@ -3178,7 +3177,7 @@ class Client(Iface):
   raise result.ace
 if result.ase is not None:
   raise result.ase
-raise TApplicationException(TApplicationException.MISSING_RESULT, 
"getAllUserSSHPubKeys failed: unknown result")
+raise TApplicationException(TApplicationException.MISSING_RESULT, 
"getAllUserSSHPubKeys failed: unknown result");
 
   def getAllGatewaySSHPubKeys(self, authzToken, gatewayId):
 """
@@ -3229,7 +3228,7 @@ class Client(Iface):
   raise result.ace
 if 

[02/13] airavata git commit: reverting the generated classes to 0.9.2 as the tests did not pass - AIRAVATA-1883

[smarru]

http://git-wip-us.apache.org/repos/asf/airavata/blob/52f18ba6/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/data/movement/GridFTPDataMovement.java
--
diff --git 
a/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/data/movement/GridFTPDataMovement.java
 
b/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/data/movement/GridFTPDataMovement.java
index 896191c..dfa04ec 100644
--- 
a/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/data/movement/GridFTPDataMovement.java
+++ 
b/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/data/movement/GridFTPDataMovement.java
@@ -16,7 +16,7 @@
  */
 
 /**
- * Autogenerated by Thrift Compiler (0.9.3)
+ * Autogenerated by Thrift Compiler (0.9.2)
  *
  * DO NOT EDIT UNLESS YOU ARE SURE THAT YOU KNOW WHAT YOU ARE DOING
  *  @generated
@@ -60,7 +60,7 @@ import org.slf4j.LoggerFactory;
  * sshPort:
  *  If a non-default port needs to used, specify it.
  */
-@Generated(value = "Autogenerated by Thrift Compiler (0.9.3)", date = 
"2015-12-16")
+@Generated(value = "Autogenerated by Thrift Compiler (0.9.2)", date = 
"2015-12-17")
 public class GridFTPDataMovement implements 
org.apache.thrift.TBase, 
java.io.Serializable, Cloneable, Comparable {
   private static final org.apache.thrift.protocol.TStruct STRUCT_DESC = new 
org.apache.thrift.protocol.TStruct("GridFTPDataMovement");
 

http://git-wip-us.apache.org/repos/asf/airavata/blob/52f18ba6/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/data/movement/LOCALDataMovement.java
--
diff --git 
a/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/data/movement/LOCALDataMovement.java
 
b/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/data/movement/LOCALDataMovement.java
index 7b57218..86c1b37 100644
--- 
a/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/data/movement/LOCALDataMovement.java
+++ 
b/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/data/movement/LOCALDataMovement.java
@@ -16,7 +16,7 @@
  */
 
 /**
- * Autogenerated by Thrift Compiler (0.9.3)
+ * Autogenerated by Thrift Compiler (0.9.2)
  *
  * DO NOT EDIT UNLESS YOU ARE SURE THAT YOU KNOW WHAT YOU ARE DOING
  *  @generated
@@ -60,7 +60,7 @@ import org.slf4j.LoggerFactory;
  * sshPort:
  *  If a non-defualt port needs to used, specify it.
  */
-@Generated(value = "Autogenerated by Thrift Compiler (0.9.3)", date = 
"2015-12-16")
+@Generated(value = "Autogenerated by Thrift Compiler (0.9.2)", date = 
"2015-12-17")
 public class LOCALDataMovement implements 
org.apache.thrift.TBase, 
java.io.Serializable, Cloneable, Comparable {
   private static final org.apache.thrift.protocol.TStruct STRUCT_DESC = new 
org.apache.thrift.protocol.TStruct("LOCALDataMovement");
 

http://git-wip-us.apache.org/repos/asf/airavata/blob/52f18ba6/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/data/movement/SCPDataMovement.java
--
diff --git 
a/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/data/movement/SCPDataMovement.java
 
b/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/data/movement/SCPDataMovement.java
index d832401..8163262 100644
--- 
a/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/data/movement/SCPDataMovement.java
+++ 
b/airavata-api/airavata-data-models/src/main/java/org/apache/airavata/model/data/movement/SCPDataMovement.java
@@ -16,7 +16,7 @@
  */
 
 /**
- * Autogenerated by Thrift Compiler (0.9.3)
+ * Autogenerated by Thrift Compiler (0.9.2)
  *
  * DO NOT EDIT UNLESS YOU ARE SURE THAT YOU KNOW WHAT YOU ARE DOING
  *  @generated
@@ -60,7 +60,7 @@ import org.slf4j.LoggerFactory;
  * sshPort:
  *  If a non-default port needs to used, specify it.
  */
-@Generated(value = "Autogenerated by Thrift Compiler (0.9.3)", date = 
"2015-12-16")
+@Generated(value = "Autogenerated by Thrift Compiler (0.9.2)", date = 
"2015-12-17")
 public class SCPDataMovement implements 
org.apache.thrift.TBase, 
java.io.Serializable, Cloneable, Comparable {
   private static final org.apache.thrift.protocol.TStruct STRUCT_DESC = new 
org.apache.thrift.protocol.TStruct("SCPDataMovement");
 
@@ -365,7 +365,7 @@ public class SCPDataMovement implements 
org.apache.thrift.TBase

airavata-php-gateway git commit: rolling back to thrift 0.9.2

[scnakandala]

Repository: airavata-php-gateway
Updated Branches:
  refs/heads/master e5e190efd -> a090e8954


rolling back to thrift 0.9.2


Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo
Commit: 
http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/a090e895
Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/a090e895
Diff: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/diff/a090e895

Branch: refs/heads/master
Commit: a090e89549ec01d8be70f4769a216e77b37c624f
Parents: e5e190e
Author: scnakandala 
Authored: Thu Dec 17 00:52:37 2015 -0500
Committer: scnakandala 
Committed: Thu Dec 17 00:52:37 2015 -0500

--
 app/libraries/Airavata/API/Airavata.php   | 2 +-
 app/libraries/Airavata/API/Error/Types.php| 2 +-
 app/libraries/Airavata/API/Types.php  | 2 +-
 app/libraries/Airavata/Model/AppCatalog/AppDeployment/Types.php   | 2 +-
 app/libraries/Airavata/Model/AppCatalog/AppInterface/Types.php| 2 +-
 app/libraries/Airavata/Model/AppCatalog/ComputeResource/Types.php | 2 +-
 app/libraries/Airavata/Model/AppCatalog/GatewayProfile/Types.php  | 2 +-
 app/libraries/Airavata/Model/AppCatalog/StorageResource/Types.php | 2 +-
 app/libraries/Airavata/Model/Application/Io/Types.php | 2 +-
 app/libraries/Airavata/Model/Commons/Types.php| 2 +-
 app/libraries/Airavata/Model/Data/Movement/Types.php  | 2 +-
 app/libraries/Airavata/Model/Data/Resource/Types.php  | 2 +-
 app/libraries/Airavata/Model/Experiment/Types.php | 2 +-
 app/libraries/Airavata/Model/Job/Types.php| 2 +-
 app/libraries/Airavata/Model/Messaging/Event/Types.php| 2 +-
 app/libraries/Airavata/Model/Process/Types.php| 2 +-
 app/libraries/Airavata/Model/Scheduling/Types.php | 2 +-
 app/libraries/Airavata/Model/Security/Types.php   | 2 +-
 app/libraries/Airavata/Model/Status/Types.php | 2 +-
 app/libraries/Airavata/Model/Task/Types.php   | 2 +-
 app/libraries/Airavata/Model/Types.php| 2 +-
 app/libraries/Airavata/Model/Workspace/Types.php  | 2 +-
 22 files changed, 22 insertions(+), 22 deletions(-)
--


http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/blob/a090e895/app/libraries/Airavata/API/Airavata.php
--
diff --git a/app/libraries/Airavata/API/Airavata.php 
b/app/libraries/Airavata/API/Airavata.php
index 4cc073b..52f2310 100644
--- a/app/libraries/Airavata/API/Airavata.php
+++ b/app/libraries/Airavata/API/Airavata.php
@@ -1,7 +1,7 @@
 http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/blob/a090e895/app/libraries/Airavata/API/Error/Types.php
--
diff --git a/app/libraries/Airavata/API/Error/Types.php 
b/app/libraries/Airavata/API/Error/Types.php
index edaa6de..d0a1ab6 100644
--- a/app/libraries/Airavata/API/Error/Types.php
+++ b/app/libraries/Airavata/API/Error/Types.php
@@ -2,7 +2,7 @@
 namespace Airavata\API\Error;
 
 /**
- * Autogenerated by Thrift Compiler (0.9.3)
+ * Autogenerated by Thrift Compiler (0.9.2)
  *
  * DO NOT EDIT UNLESS YOU ARE SURE THAT YOU KNOW WHAT YOU ARE DOING
  *  @generated

http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/blob/a090e895/app/libraries/Airavata/API/Types.php
--
diff --git a/app/libraries/Airavata/API/Types.php 
b/app/libraries/Airavata/API/Types.php
index 389e1ca..2261a42 100644
--- a/app/libraries/Airavata/API/Types.php
+++ b/app/libraries/Airavata/API/Types.php
@@ -2,7 +2,7 @@
 namespace Airavata\API;
 
 /**
- * Autogenerated by Thrift Compiler (0.9.3)
+ * Autogenerated by Thrift Compiler (0.9.2)
  *
  * DO NOT EDIT UNLESS YOU ARE SURE THAT YOU KNOW WHAT YOU ARE DOING
  *  @generated

http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/blob/a090e895/app/libraries/Airavata/Model/AppCatalog/AppDeployment/Types.php
--
diff --git a/app/libraries/Airavata/Model/AppCatalog/AppDeployment/Types.php 
b/app/libraries/Airavata/Model/AppCatalog/AppDeployment/Types.php
index ab599e6..e35f999 100644
--- a/app/libraries/Airavata/Model/AppCatalog/AppDeployment/Types.php
+++ b/app/libraries/Airavata/Model/AppCatalog/AppDeployment/Types.php
@@ -2,7 +2,7 @@
 namespace Airavata\Model\AppCatalog\AppDeployment;
 
 /**
- * Autogenerated by Thrift Compiler (0.9.3)
+ * Autogenerated by Thrift Compiler (0.9.2)
  *
  * DO NOT EDIT UNLESS YOU ARE SURE THAT YOU KNOW WHAT YOU ARE DOING
  

airavata git commit: reverting the server version as well

[smarru]

Repository: airavata
Updated Branches:
  refs/heads/master 52f18ba68 -> f4aafbfe3


reverting the server version as well


Project: http://git-wip-us.apache.org/repos/asf/airavata/repo
Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/f4aafbfe
Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/f4aafbfe
Diff: http://git-wip-us.apache.org/repos/asf/airavata/diff/f4aafbfe

Branch: refs/heads/master
Commit: f4aafbfe32386dfc2360afc9e7a681cf1f38
Parents: 52f18ba
Author: smarru 
Authored: Thu Dec 17 00:54:43 2015 -0500
Committer: smarru 
Committed: Thu Dec 17 00:54:43 2015 -0500

--
 pom.xml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)
--


http://git-wip-us.apache.org/repos/asf/airavata/blob/f4aafbfe/pom.xml
--
diff --git a/pom.xml b/pom.xml
index 6eea5e0..0f320b5 100644
--- a/pom.xml
+++ b/pom.xml
@@ -92,7 +92,7 @@
1.50
2.1.0
1.0.0
-   0.9.3
+   0.9.2
5.1.34
false
 2.3

[10/13] airavata git commit: reverting the generated classes to 0.9.2 as the tests did not pass - AIRAVATA-1883

[smarru]

http://git-wip-us.apache.org/repos/asf/airavata/blob/52f18ba6/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/airavata_api_constants.cpp
--
diff --git 
a/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/airavata_api_constants.cpp
 
b/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/airavata_api_constants.cpp
index 9a13809..6a8bf09 100644
--- 
a/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/airavata_api_constants.cpp
+++ 
b/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/airavata_api_constants.cpp
@@ -16,7 +16,7 @@
  */
 
 /**
- * Autogenerated by Thrift Compiler (0.9.3)
+ * Autogenerated by Thrift Compiler (0.9.2)
  *
  * DO NOT EDIT UNLESS YOU ARE SURE THAT YOU KNOW WHAT YOU ARE DOING
  *  @generated

http://git-wip-us.apache.org/repos/asf/airavata/blob/52f18ba6/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/airavata_api_constants.h
--
diff --git 
a/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/airavata_api_constants.h
 
b/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/airavata_api_constants.h
index 7304f11..7de8402 100644
--- 
a/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/airavata_api_constants.h
+++ 
b/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/airavata_api_constants.h
@@ -16,7 +16,7 @@
  */
 
 /**
- * Autogenerated by Thrift Compiler (0.9.3)
+ * Autogenerated by Thrift Compiler (0.9.2)
  *
  * DO NOT EDIT UNLESS YOU ARE SURE THAT YOU KNOW WHAT YOU ARE DOING
  *  @generated

http://git-wip-us.apache.org/repos/asf/airavata/blob/52f18ba6/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/airavata_api_types.cpp
--
diff --git 
a/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/airavata_api_types.cpp
 
b/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/airavata_api_types.cpp
index 1cbdcaa..67600ea 100644
--- 
a/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/airavata_api_types.cpp
+++ 
b/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/airavata_api_types.cpp
@@ -16,7 +16,7 @@
  */
 
 /**
- * Autogenerated by Thrift Compiler (0.9.3)
+ * Autogenerated by Thrift Compiler (0.9.2)
  *
  * DO NOT EDIT UNLESS YOU ARE SURE THAT YOU KNOW WHAT YOU ARE DOING
  *  @generated

http://git-wip-us.apache.org/repos/asf/airavata/blob/52f18ba6/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/airavata_api_types.h
--
diff --git 
a/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/airavata_api_types.h
 
b/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/airavata_api_types.h
index 5d059c5..692cd5f 100644
--- 
a/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/airavata_api_types.h
+++ 
b/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/airavata_api_types.h
@@ -16,7 +16,7 @@
  */
 
 /**
- * Autogenerated by Thrift Compiler (0.9.3)
+ * Autogenerated by Thrift Compiler (0.9.2)
  *
  * DO NOT EDIT UNLESS YOU ARE SURE THAT YOU KNOW WHAT YOU ARE DOING
  *  @generated

http://git-wip-us.apache.org/repos/asf/airavata/blob/52f18ba6/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/airavata_commons_constants.cpp
--
diff --git 
a/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/airavata_commons_constants.cpp
 
b/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/airavata_commons_constants.cpp
index 989f7eb..c67be12 100644
--- 
a/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/airavata_commons_constants.cpp
+++ 
b/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/airavata_commons_constants.cpp
@@ -16,7 +16,7 @@
  */
 
 /**
- * Autogenerated by Thrift Compiler (0.9.3)
+ * Autogenerated by Thrift Compiler (0.9.2)
  *
  * DO NOT EDIT UNLESS YOU ARE SURE THAT YOU KNOW WHAT YOU ARE DOING
  *  @generated

http://git-wip-us.apache.org/repos/asf/airavata/blob/52f18ba6/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/airavata_commons_constants.h
--
diff --git 

[03/13] airavata git commit: reverting the generated classes to 0.9.2 as the tests did not pass - AIRAVATA-1883

[smarru]

http://git-wip-us.apache.org/repos/asf/airavata/blob/52f18ba6/airavata-api/airavata-client-sdks/airavata-python-sdk/src/main/resources/lib/apache/airavata/model/process/ttypes.py
--
diff --git 
a/airavata-api/airavata-client-sdks/airavata-python-sdk/src/main/resources/lib/apache/airavata/model/process/ttypes.py
 
b/airavata-api/airavata-client-sdks/airavata-python-sdk/src/main/resources/lib/apache/airavata/model/process/ttypes.py
index 802d6a7..b83a663 100644
--- 
a/airavata-api/airavata-client-sdks/airavata-python-sdk/src/main/resources/lib/apache/airavata/model/process/ttypes.py
+++ 
b/airavata-api/airavata-client-sdks/airavata-python-sdk/src/main/resources/lib/apache/airavata/model/process/ttypes.py
@@ -1,5 +1,5 @@
 #
-# Autogenerated by Thrift Compiler (0.9.3)
+# Autogenerated by Thrift Compiler (0.9.2)
 #
 # DO NOT EDIT UNLESS YOU ARE SURE THAT YOU KNOW WHAT YOU ARE DOING
 #
@@ -116,22 +116,22 @@ class ProcessModel:
 break
   if fid == 1:
 if ftype == TType.STRING:
-  self.processId = iprot.readString()
+  self.processId = iprot.readString();
 else:
   iprot.skip(ftype)
   elif fid == 2:
 if ftype == TType.STRING:
-  self.experimentId = iprot.readString()
+  self.experimentId = iprot.readString();
 else:
   iprot.skip(ftype)
   elif fid == 3:
 if ftype == TType.I64:
-  self.creationTime = iprot.readI64()
+  self.creationTime = iprot.readI64();
 else:
   iprot.skip(ftype)
   elif fid == 4:
 if ftype == TType.I64:
-  self.lastUpdateTime = iprot.readI64()
+  self.lastUpdateTime = iprot.readI64();
 else:
   iprot.skip(ftype)
   elif fid == 5:
@@ -142,22 +142,22 @@ class ProcessModel:
   iprot.skip(ftype)
   elif fid == 6:
 if ftype == TType.STRING:
-  self.processDetail = iprot.readString()
+  self.processDetail = iprot.readString();
 else:
   iprot.skip(ftype)
   elif fid == 7:
 if ftype == TType.STRING:
-  self.applicationInterfaceId = iprot.readString()
+  self.applicationInterfaceId = iprot.readString();
 else:
   iprot.skip(ftype)
   elif fid == 8:
 if ftype == TType.STRING:
-  self.applicationDeploymentId = iprot.readString()
+  self.applicationDeploymentId = iprot.readString();
 else:
   iprot.skip(ftype)
   elif fid == 9:
 if ftype == TType.STRING:
-  self.computeResourceId = iprot.readString()
+  self.computeResourceId = iprot.readString();
 else:
   iprot.skip(ftype)
   elif fid == 10:
@@ -201,7 +201,7 @@ class ProcessModel:
   iprot.skip(ftype)
   elif fid == 14:
 if ftype == TType.STRING:
-  self.taskDag = iprot.readString()
+  self.taskDag = iprot.readString();
 else:
   iprot.skip(ftype)
   elif fid == 15:
@@ -212,12 +212,12 @@ class ProcessModel:
   iprot.skip(ftype)
   elif fid == 16:
 if ftype == TType.STRING:
-  self.gatewayExecutionId = iprot.readString()
+  self.gatewayExecutionId = iprot.readString();
 else:
   iprot.skip(ftype)
   elif fid == 17:
 if ftype == TType.BOOL:
-  self.enableEmailNotification = iprot.readBool()
+  self.enableEmailNotification = iprot.readBool();
 else:
   iprot.skip(ftype)
   elif fid == 18:
@@ -225,24 +225,24 @@ class ProcessModel:
   self.emailAddresses = []
   (_etype21, _size18) = iprot.readListBegin()
   for _i22 in xrange(_size18):
-_elem23 = iprot.readString()
+_elem23 = iprot.readString();
 self.emailAddresses.append(_elem23)
   iprot.readListEnd()
 else:
   iprot.skip(ftype)
   elif fid == 19:
 if ftype == TType.STRING:
-  self.storageResourceId = iprot.readString()
+  self.storageResourceId = iprot.readString();
 else:
   iprot.skip(ftype)
   elif fid == 20:
 if ftype == TType.STRING:
-  self.userDn = iprot.readString()
+  self.userDn = iprot.readString();
 else:
   iprot.skip(ftype)
   elif fid == 21:
 if ftype == TType.BOOL:
-  self.generateCert = iprot.readBool()
+  self.generateCert = iprot.readBool();
 else:
   iprot.skip(ftype)
   else:

http://git-wip-us.apache.org/repos/asf/airavata/blob/52f18ba6/airavata-api/airavata-client-sdks/airavata-python-sdk/src/main/resources/lib/apache/airavata/model/scheduling/constants.py
--
diff --git 
a/airavata-api/airavata-client-sdks/airavata-python-sdk/src/main/resources/lib/apache/airavata/model/scheduling/constants.py
 

[06/13] airavata git commit: reverting the generated classes to 0.9.2 as the tests did not pass - AIRAVATA-1883

[smarru]

http://git-wip-us.apache.org/repos/asf/airavata/blob/52f18ba6/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/task_model_types.cpp
--
diff --git 
a/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/task_model_types.cpp
 
b/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/task_model_types.cpp
index dba3511..30ba1e9 100644
--- 
a/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/task_model_types.cpp
+++ 
b/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/task_model_types.cpp
@@ -16,7 +16,7 @@
  */
 
 /**
- * Autogenerated by Thrift Compiler (0.9.3)
+ * Autogenerated by Thrift Compiler (0.9.2)
  *
  * DO NOT EDIT UNLESS YOU ARE SURE THAT YOU KNOW WHAT YOU ARE DOING
  *  @generated
@@ -107,9 +107,11 @@ void TaskModel::__set_jobs(const std::vector< 
::apache::airavata::model::job::Jo
 __isset.jobs = true;
 }
 
+const char* TaskModel::ascii_fingerprint = "BA52131C9C867CBF7281F29EDD7DDB6F";
+const uint8_t TaskModel::binary_fingerprint[16] = 
{0xBA,0x52,0x13,0x1C,0x9C,0x86,0x7C,0xBF,0x72,0x81,0xF2,0x9E,0xDD,0x7D,0xDB,0x6F};
+
 uint32_t TaskModel::read(::apache::thrift::protocol::TProtocol* iprot) {
 
-  apache::thrift::protocol::TInputRecursionTracker tracker(*iprot);
   uint32_t xfer = 0;
   std::string fname;
   ::apache::thrift::protocol::TType ftype;
@@ -254,7 +256,7 @@ uint32_t 
TaskModel::read(::apache::thrift::protocol::TProtocol* iprot) {
 
 uint32_t TaskModel::write(::apache::thrift::protocol::TProtocol* oprot) const {
   uint32_t xfer = 0;
-  apache::thrift::protocol::TOutputRecursionTracker tracker(*oprot);
+  oprot->incrementRecursionDepth();
   xfer += oprot->writeStructBegin("TaskModel");
 
   xfer += oprot->writeFieldBegin("taskId", 
::apache::thrift::protocol::T_STRING, 1);
@@ -311,6 +313,7 @@ uint32_t 
TaskModel::write(::apache::thrift::protocol::TProtocol* oprot) const {
   }
   xfer += oprot->writeFieldStop();
   xfer += oprot->writeStructEnd();
+  oprot->decrementRecursionDepth();
   return xfer;
 }
 
@@ -356,20 +359,21 @@ TaskModel& TaskModel::operator=(const TaskModel& other8) {
   __isset = other8.__isset;
   return *this;
 }
-void TaskModel::printTo(std::ostream& out) const {
-  using ::apache::thrift::to_string;
+std::ostream& operator<<(std::ostream& out, const TaskModel& obj) {
+  using apache::thrift::to_string;
   out << "TaskModel(";
-  out << "taskId=" << to_string(taskId);
-  out << ", " << "taskType=" << to_string(taskType);
-  out << ", " << "parentProcessId=" << to_string(parentProcessId);
-  out << ", " << "creationTime=" << to_string(creationTime);
-  out << ", " << "lastUpdateTime=" << to_string(lastUpdateTime);
-  out << ", " << "taskStatus=" << to_string(taskStatus);
-  out << ", " << "taskDetail="; (__isset.taskDetail ? (out << 
to_string(taskDetail)) : (out << ""));
-  out << ", " << "subTaskModel="; (__isset.subTaskModel ? (out << 
to_string(subTaskModel)) : (out << ""));
-  out << ", " << "taskError="; (__isset.taskError ? (out << 
to_string(taskError)) : (out << ""));
-  out << ", " << "jobs="; (__isset.jobs ? (out << to_string(jobs)) : (out << 
""));
+  out << "taskId=" << to_string(obj.taskId);
+  out << ", " << "taskType=" << to_string(obj.taskType);
+  out << ", " << "parentProcessId=" << to_string(obj.parentProcessId);
+  out << ", " << "creationTime=" << to_string(obj.creationTime);
+  out << ", " << "lastUpdateTime=" << to_string(obj.lastUpdateTime);
+  out << ", " << "taskStatus=" << to_string(obj.taskStatus);
+  out << ", " << "taskDetail="; (obj.__isset.taskDetail ? (out << 
to_string(obj.taskDetail)) : (out << ""));
+  out << ", " << "subTaskModel="; (obj.__isset.subTaskModel ? (out << 
to_string(obj.subTaskModel)) : (out << ""));
+  out << ", " << "taskError="; (obj.__isset.taskError ? (out << 
to_string(obj.taskError)) : (out << ""));
+  out << ", " << "jobs="; (obj.__isset.jobs ? (out << to_string(obj.jobs)) : 
(out << ""));
   out << ")";
+  return out;
 }
 
 
@@ -414,9 +418,11 @@ void DataStagingTaskModel::__set_processOutput(const  
::apache::airavata::model:
 __isset.processOutput = true;
 }
 
+const char* DataStagingTaskModel::ascii_fingerprint = 
"ACF0A091382F299B453E77765150F8C9";
+const uint8_t DataStagingTaskModel::binary_fingerprint[16] = 
{0xAC,0xF0,0xA0,0x91,0x38,0x2F,0x29,0x9B,0x45,0x3E,0x77,0x76,0x51,0x50,0xF8,0xC9};
+
 uint32_t DataStagingTaskModel::read(::apache::thrift::protocol::TProtocol* 
iprot) {
 
-  apache::thrift::protocol::TInputRecursionTracker tracker(*iprot);
   uint32_t xfer = 0;
   std::string fname;
   ::apache::thrift::protocol::TType ftype;
@@ -524,7 +530,7 @@ uint32_t 
DataStagingTaskModel::read(::apache::thrift::protocol::TProtocol* iprot
 
 uint32_t DataStagingTaskModel::write(::apache::thrift::protocol::TProtocol* 
oprot) const {
   uint32_t xfer = 0;
-  

[11/13] airavata git commit: reverting the generated classes to 0.9.2 as the tests did not pass - AIRAVATA-1883

[smarru]

http://git-wip-us.apache.org/repos/asf/airavata/blob/52f18ba6/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/Airavata.h
--
diff --git 
a/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/Airavata.h
 
b/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/Airavata.h
index 5a4d1e4..eb4a5a5 100644
--- 
a/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/Airavata.h
+++ 
b/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/Airavata.h
@@ -16,7 +16,7 @@
  */
 
 /**
- * Autogenerated by Thrift Compiler (0.9.3)
+ * Autogenerated by Thrift Compiler (0.9.2)
  *
  * DO NOT EDIT UNLESS YOU ARE SURE THAT YOU KNOW WHAT YOU ARE DOING
  *  @generated
@@ -25,16 +25,10 @@
 #define Airavata_H
 
 #include 
-#include 
 #include "airavata_api_types.h"
 
 namespace apache { namespace airavata { namespace api {
 
-#ifdef _WIN32
-  #pragma warning( push )
-  #pragma warning (disable : 4250 ) //inheriting methods via dominance 
-#endif
-
 class AiravataIf {
  public:
   virtual ~AiravataIf() {}
@@ -2773,6 +2767,9 @@ class AiravataNull : virtual public AiravataIf {
 class Airavata_getAPIVersion_args {
  public:
 
+  static const char* ascii_fingerprint; // = 
"75A7E945AEBB96C8FA8998CBCEB31C27";
+  static const uint8_t binary_fingerprint[16]; // = 
{0x75,0xA7,0xE9,0x45,0xAE,0xBB,0x96,0xC8,0xFA,0x89,0x98,0xCB,0xCE,0xB3,0x1C,0x27};
+
   Airavata_getAPIVersion_args(const Airavata_getAPIVersion_args&);
   Airavata_getAPIVersion_args& operator=(const Airavata_getAPIVersion_args&);
   Airavata_getAPIVersion_args() {
@@ -2798,18 +2795,23 @@ class Airavata_getAPIVersion_args {
   uint32_t read(::apache::thrift::protocol::TProtocol* iprot);
   uint32_t write(::apache::thrift::protocol::TProtocol* oprot) const;
 
+  friend std::ostream& operator<<(std::ostream& out, const 
Airavata_getAPIVersion_args& obj);
 };
 
 
 class Airavata_getAPIVersion_pargs {
  public:
 
+  static const char* ascii_fingerprint; // = 
"75A7E945AEBB96C8FA8998CBCEB31C27";
+  static const uint8_t binary_fingerprint[16]; // = 
{0x75,0xA7,0xE9,0x45,0xAE,0xBB,0x96,0xC8,0xFA,0x89,0x98,0xCB,0xCE,0xB3,0x1C,0x27};
+
 
   virtual ~Airavata_getAPIVersion_pargs() throw();
   const  ::apache::airavata::model::security::AuthzToken* authzToken;
 
   uint32_t write(::apache::thrift::protocol::TProtocol* oprot) const;
 
+  friend std::ostream& operator<<(std::ostream& out, const 
Airavata_getAPIVersion_pargs& obj);
 };
 
 typedef struct _Airavata_getAPIVersion_result__isset {
@@ -2824,6 +2826,9 @@ typedef struct _Airavata_getAPIVersion_result__isset {
 class Airavata_getAPIVersion_result {
  public:
 
+  static const char* ascii_fingerprint; // = 
"21BF57A9FE5AAA661540804D4FB9F023";
+  static const uint8_t binary_fingerprint[16]; // = 
{0x21,0xBF,0x57,0xA9,0xFE,0x5A,0xAA,0x66,0x15,0x40,0x80,0x4D,0x4F,0xB9,0xF0,0x23};
+
   Airavata_getAPIVersion_result(const Airavata_getAPIVersion_result&);
   Airavata_getAPIVersion_result& operator=(const 
Airavata_getAPIVersion_result&);
   Airavata_getAPIVersion_result() : success() {
@@ -2871,6 +2876,7 @@ class Airavata_getAPIVersion_result {
   uint32_t read(::apache::thrift::protocol::TProtocol* iprot);
   uint32_t write(::apache::thrift::protocol::TProtocol* oprot) const;
 
+  friend std::ostream& operator<<(std::ostream& out, const 
Airavata_getAPIVersion_result& obj);
 };
 
 typedef struct _Airavata_getAPIVersion_presult__isset {
@@ -2885,6 +2891,9 @@ typedef struct _Airavata_getAPIVersion_presult__isset {
 class Airavata_getAPIVersion_presult {
  public:
 
+  static const char* ascii_fingerprint; // = 
"21BF57A9FE5AAA661540804D4FB9F023";
+  static const uint8_t binary_fingerprint[16]; // = 
{0x21,0xBF,0x57,0xA9,0xFE,0x5A,0xAA,0x66,0x15,0x40,0x80,0x4D,0x4F,0xB9,0xF0,0x23};
+
 
   virtual ~Airavata_getAPIVersion_presult() throw();
   std::string* success;
@@ -2897,12 +2906,16 @@ class Airavata_getAPIVersion_presult {
 
   uint32_t read(::apache::thrift::protocol::TProtocol* iprot);
 
+  friend std::ostream& operator<<(std::ostream& out, const 
Airavata_getAPIVersion_presult& obj);
 };
 
 
 class Airavata_addGateway_args {
  public:
 
+  static const char* ascii_fingerprint; // = 
"04DA9961C72375F564BB2C724C51FAF2";
+  static const uint8_t binary_fingerprint[16]; // = 
{0x04,0xDA,0x99,0x61,0xC7,0x23,0x75,0xF5,0x64,0xBB,0x2C,0x72,0x4C,0x51,0xFA,0xF2};
+
   Airavata_addGateway_args(const Airavata_addGateway_args&);
   Airavata_addGateway_args& operator=(const Airavata_addGateway_args&);
   Airavata_addGateway_args() {
@@ -2933,12 +2946,16 @@ class Airavata_addGateway_args {
   uint32_t read(::apache::thrift::protocol::TProtocol* iprot);
   uint32_t write(::apache::thrift::protocol::TProtocol* oprot) const;
 
+  friend std::ostream& operator<<(std::ostream& out, const 
Airavata_addGateway_args& obj);
 };
 
 
 class 

[07/13] airavata git commit: reverting the generated classes to 0.9.2 as the tests did not pass - AIRAVATA-1883

[smarru]

http://git-wip-us.apache.org/repos/asf/airavata/blob/52f18ba6/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/messaging_events_types.h
--
diff --git 
a/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/messaging_events_types.h
 
b/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/messaging_events_types.h
index d5a2411..af34dc9 100644
--- 
a/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/messaging_events_types.h
+++ 
b/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/messaging_events_types.h
@@ -16,7 +16,7 @@
  */
 
 /**
- * Autogenerated by Thrift Compiler (0.9.3)
+ * Autogenerated by Thrift Compiler (0.9.2)
  *
  * DO NOT EDIT UNLESS YOU ARE SURE THAT YOU KNOW WHAT YOU ARE DOING
  *  @generated
@@ -96,6 +96,9 @@ class Message;
 class ExperimentStatusChangeEvent {
  public:
 
+  static const char* ascii_fingerprint; // = 
"38C252E94E93B69D04EB3A6EE2F9EDFB";
+  static const uint8_t binary_fingerprint[16]; // = 
{0x38,0xC2,0x52,0xE9,0x4E,0x93,0xB6,0x9D,0x04,0xEB,0x3A,0x6E,0xE2,0xF9,0xED,0xFB};
+
   ExperimentStatusChangeEvent(const ExperimentStatusChangeEvent&);
   ExperimentStatusChangeEvent& operator=(const ExperimentStatusChangeEvent&);
   ExperimentStatusChangeEvent() : state(( 
::apache::airavata::model::status::ExperimentState::type)0), experimentId(), 
gatewayId() {
@@ -131,21 +134,18 @@ class ExperimentStatusChangeEvent {
   uint32_t read(::apache::thrift::protocol::TProtocol* iprot);
   uint32_t write(::apache::thrift::protocol::TProtocol* oprot) const;
 
-  virtual void printTo(std::ostream& out) const;
+  friend std::ostream& operator<<(std::ostream& out, const 
ExperimentStatusChangeEvent& obj);
 };
 
 void swap(ExperimentStatusChangeEvent , ExperimentStatusChangeEvent );
 
-inline std::ostream& operator<<(std::ostream& out, const 
ExperimentStatusChangeEvent& obj)
-{
-  obj.printTo(out);
-  return out;
-}
-
 
 class ProcessIdentifier {
  public:
 
+  static const char* ascii_fingerprint; // = 
"AB879940BD15B6B25691265F7384B271";
+  static const uint8_t binary_fingerprint[16]; // = 
{0xAB,0x87,0x99,0x40,0xBD,0x15,0xB6,0xB2,0x56,0x91,0x26,0x5F,0x73,0x84,0xB2,0x71};
+
   ProcessIdentifier(const ProcessIdentifier&);
   ProcessIdentifier& operator=(const ProcessIdentifier&);
   ProcessIdentifier() : processId(), experimentId(), gatewayId() {
@@ -181,21 +181,18 @@ class ProcessIdentifier {
   uint32_t read(::apache::thrift::protocol::TProtocol* iprot);
   uint32_t write(::apache::thrift::protocol::TProtocol* oprot) const;
 
-  virtual void printTo(std::ostream& out) const;
+  friend std::ostream& operator<<(std::ostream& out, const ProcessIdentifier& 
obj);
 };
 
 void swap(ProcessIdentifier , ProcessIdentifier );
 
-inline std::ostream& operator<<(std::ostream& out, const ProcessIdentifier& 
obj)
-{
-  obj.printTo(out);
-  return out;
-}
-
 
 class TaskIdentifier {
  public:
 
+  static const char* ascii_fingerprint; // = 
"C93D890311F28844166CF6E571EB3AC2";
+  static const uint8_t binary_fingerprint[16]; // = 
{0xC9,0x3D,0x89,0x03,0x11,0xF2,0x88,0x44,0x16,0x6C,0xF6,0xE5,0x71,0xEB,0x3A,0xC2};
+
   TaskIdentifier(const TaskIdentifier&);
   TaskIdentifier& operator=(const TaskIdentifier&);
   TaskIdentifier() : taskId(), processId(), experimentId(), gatewayId() {
@@ -236,21 +233,18 @@ class TaskIdentifier {
   uint32_t read(::apache::thrift::protocol::TProtocol* iprot);
   uint32_t write(::apache::thrift::protocol::TProtocol* oprot) const;
 
-  virtual void printTo(std::ostream& out) const;
+  friend std::ostream& operator<<(std::ostream& out, const TaskIdentifier& 
obj);
 };
 
 void swap(TaskIdentifier , TaskIdentifier );
 
-inline std::ostream& operator<<(std::ostream& out, const TaskIdentifier& obj)
-{
-  obj.printTo(out);
-  return out;
-}
-
 
 class TaskStatusChangeEvent {
  public:
 
+  static const char* ascii_fingerprint; // = 
"8D18A3CD1822DBC67D7BD8CB98E7B4F1";
+  static const uint8_t binary_fingerprint[16]; // = 
{0x8D,0x18,0xA3,0xCD,0x18,0x22,0xDB,0xC6,0x7D,0x7B,0xD8,0xCB,0x98,0xE7,0xB4,0xF1};
+
   TaskStatusChangeEvent(const TaskStatusChangeEvent&);
   TaskStatusChangeEvent& operator=(const TaskStatusChangeEvent&);
   TaskStatusChangeEvent() : state(( 
::apache::airavata::model::status::TaskState::type)0) {
@@ -281,21 +275,18 @@ class TaskStatusChangeEvent {
   uint32_t read(::apache::thrift::protocol::TProtocol* iprot);
   uint32_t write(::apache::thrift::protocol::TProtocol* oprot) const;
 
-  virtual void printTo(std::ostream& out) const;
+  friend std::ostream& operator<<(std::ostream& out, const 
TaskStatusChangeEvent& obj);
 };
 
 void swap(TaskStatusChangeEvent , TaskStatusChangeEvent );
 
-inline std::ostream& operator<<(std::ostream& out, const 
TaskStatusChangeEvent& obj)
-{
-  obj.printTo(out);
-  return out;
-}
-
 
 class 

[12/13] airavata git commit: reverting the generated classes to 0.9.2 as the tests did not pass - AIRAVATA-1883

[smarru]

http://git-wip-us.apache.org/repos/asf/airavata/blob/52f18ba6/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/Airavata.cpp
--
diff --git 
a/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/Airavata.cpp
 
b/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/Airavata.cpp
index 5fa7f87..ca7c397 100644
--- 
a/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/Airavata.cpp
+++ 
b/airavata-api/airavata-client-sdks/airavata-cpp-sdk/src/main/resources/lib/airavata/Airavata.cpp
@@ -16,7 +16,7 @@
  */
 
 /**
- * Autogenerated by Thrift Compiler (0.9.3)
+ * Autogenerated by Thrift Compiler (0.9.2)
  *
  * DO NOT EDIT UNLESS YOU ARE SURE THAT YOU KNOW WHAT YOU ARE DOING
  *  @generated
@@ -32,7 +32,6 @@ Airavata_getAPIVersion_args::~Airavata_getAPIVersion_args() 
throw() {
 
 uint32_t 
Airavata_getAPIVersion_args::read(::apache::thrift::protocol::TProtocol* iprot) 
{
 
-  apache::thrift::protocol::TInputRecursionTracker tracker(*iprot);
   uint32_t xfer = 0;
   std::string fname;
   ::apache::thrift::protocol::TType ftype;
@@ -76,7 +75,7 @@ uint32_t 
Airavata_getAPIVersion_args::read(::apache::thrift::protocol::TProtocol
 
 uint32_t 
Airavata_getAPIVersion_args::write(::apache::thrift::protocol::TProtocol* 
oprot) const {
   uint32_t xfer = 0;
-  apache::thrift::protocol::TOutputRecursionTracker tracker(*oprot);
+  oprot->incrementRecursionDepth();
   xfer += oprot->writeStructBegin("Airavata_getAPIVersion_args");
 
   xfer += oprot->writeFieldBegin("authzToken", 
::apache::thrift::protocol::T_STRUCT, 1);
@@ -85,6 +84,7 @@ uint32_t 
Airavata_getAPIVersion_args::write(::apache::thrift::protocol::TProtoco
 
   xfer += oprot->writeFieldStop();
   xfer += oprot->writeStructEnd();
+  oprot->decrementRecursionDepth();
   return xfer;
 }
 
@@ -95,7 +95,7 @@ Airavata_getAPIVersion_pargs::~Airavata_getAPIVersion_pargs() 
throw() {
 
 uint32_t 
Airavata_getAPIVersion_pargs::write(::apache::thrift::protocol::TProtocol* 
oprot) const {
   uint32_t xfer = 0;
-  apache::thrift::protocol::TOutputRecursionTracker tracker(*oprot);
+  oprot->incrementRecursionDepth();
   xfer += oprot->writeStructBegin("Airavata_getAPIVersion_pargs");
 
   xfer += oprot->writeFieldBegin("authzToken", 
::apache::thrift::protocol::T_STRUCT, 1);
@@ -104,6 +104,7 @@ uint32_t 
Airavata_getAPIVersion_pargs::write(::apache::thrift::protocol::TProtoc
 
   xfer += oprot->writeFieldStop();
   xfer += oprot->writeStructEnd();
+  oprot->decrementRecursionDepth();
   return xfer;
 }
 
@@ -114,7 +115,6 @@ 
Airavata_getAPIVersion_result::~Airavata_getAPIVersion_result() throw() {
 
 uint32_t 
Airavata_getAPIVersion_result::read(::apache::thrift::protocol::TProtocol* 
iprot) {
 
-  apache::thrift::protocol::TInputRecursionTracker tracker(*iprot);
   uint32_t xfer = 0;
   std::string fname;
   ::apache::thrift::protocol::TType ftype;
@@ -224,7 +224,6 @@ 
Airavata_getAPIVersion_presult::~Airavata_getAPIVersion_presult() throw() {
 
 uint32_t 
Airavata_getAPIVersion_presult::read(::apache::thrift::protocol::TProtocol* 
iprot) {
 
-  apache::thrift::protocol::TInputRecursionTracker tracker(*iprot);
   uint32_t xfer = 0;
   std::string fname;
   ::apache::thrift::protocol::TType ftype;
@@ -302,7 +301,6 @@ Airavata_addGateway_args::~Airavata_addGateway_args() 
throw() {
 
 uint32_t Airavata_addGateway_args::read(::apache::thrift::protocol::TProtocol* 
iprot) {
 
-  apache::thrift::protocol::TInputRecursionTracker tracker(*iprot);
   uint32_t xfer = 0;
   std::string fname;
   ::apache::thrift::protocol::TType ftype;
@@ -357,7 +355,7 @@ uint32_t 
Airavata_addGateway_args::read(::apache::thrift::protocol::TProtocol* i
 
 uint32_t 
Airavata_addGateway_args::write(::apache::thrift::protocol::TProtocol* oprot) 
const {
   uint32_t xfer = 0;
-  apache::thrift::protocol::TOutputRecursionTracker tracker(*oprot);
+  oprot->incrementRecursionDepth();
   xfer += oprot->writeStructBegin("Airavata_addGateway_args");
 
   xfer += oprot->writeFieldBegin("authzToken", 
::apache::thrift::protocol::T_STRUCT, 1);
@@ -370,6 +368,7 @@ uint32_t 
Airavata_addGateway_args::write(::apache::thrift::protocol::TProtocol*
 
   xfer += oprot->writeFieldStop();
   xfer += oprot->writeStructEnd();
+  oprot->decrementRecursionDepth();
   return xfer;
 }
 
@@ -380,7 +379,7 @@ Airavata_addGateway_pargs::~Airavata_addGateway_pargs() 
throw() {
 
 uint32_t 
Airavata_addGateway_pargs::write(::apache::thrift::protocol::TProtocol* oprot) 
const {
   uint32_t xfer = 0;
-  apache::thrift::protocol::TOutputRecursionTracker tracker(*oprot);
+  oprot->incrementRecursionDepth();
   xfer += oprot->writeStructBegin("Airavata_addGateway_pargs");
 
   xfer += oprot->writeFieldBegin("authzToken", 
::apache::thrift::protocol::T_STRUCT, 1);
@@ -393,6 +392,7 @@ uint32_t 

airavata git commit: Adding descriptions to thirft API methods

[eroma]

Repository: airavata
Updated Branches:
  refs/heads/master d8987244b -> 648a0cb99


Adding descriptions to thirft API methods


Project: http://git-wip-us.apache.org/repos/asf/airavata/repo
Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/648a0cb9
Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/648a0cb9
Diff: http://git-wip-us.apache.org/repos/asf/airavata/diff/648a0cb9

Branch: refs/heads/master
Commit: 648a0cb9931e616b9f8616e3879cae3fdfe8d81b
Parents: d898724
Author: Eroma Abeysinghe 
Authored: Wed Dec 16 09:51:52 2015 -0500
Committer: Eroma Abeysinghe 
Committed: Wed Dec 16 09:51:52 2015 -0500

--
 .../airavata-apis/airavata_api.thrift   | 101 ---
 1 file changed, 64 insertions(+), 37 deletions(-)
--


http://git-wip-us.apache.org/repos/asf/airavata/blob/648a0cb9/thrift-interface-descriptions/airavata-apis/airavata_api.thrift
--
diff --git a/thrift-interface-descriptions/airavata-apis/airavata_api.thrift 
b/thrift-interface-descriptions/airavata-apis/airavata_api.thrift
index d49cc95..6ee4f99 100644
--- a/thrift-interface-descriptions/airavata-apis/airavata_api.thrift
+++ b/thrift-interface-descriptions/airavata-apis/airavata_api.thrift
@@ -284,7 +284,7 @@ service Airavata {
  throws (1: airavata_errors.InvalidRequestException ire,
  2: airavata_errors.AiravataClientException ace,
  3: airavata_errors.AiravataSystemException ase)
-  /**
+   /**
* Creates a Project with basic metadata.
*A Project is a container of experiments.
*
@@ -294,7 +294,8 @@ service Airavata {
* @param Project
*The Project Object described in the workspace_model
*
-  */
+   **/
+
   string createProject (1: required security_model.AuthzToken authzToken,
 2: required string gatewayId,
 3: required workspace_model.Project project)
@@ -303,7 +304,7 @@ service Airavata {
   3: airavata_errors.AiravataSystemException ase,
   4: airavata_errors.AuthorizationException ae)
 
-  /**
+   /**
* Update an Existing Project
*
* @param projectId
@@ -312,7 +313,8 @@ service Airavata {
* @return void
*Currently this does not return any value.
*
-  */
+   **/
+
   void updateProject (1: required security_model.AuthzToken authzToken,
   2: required string projectId,
   3: required workspace_model.Project updatedProject)
@@ -322,7 +324,7 @@ service Airavata {
   4: airavata_errors.ProjectNotFoundException pnfe,
   5: airavata_errors.AuthorizationException ae)
 
-/**
+   /**
* Get a Project by ID
*This method is to obtain a project by providing a projectId
*
@@ -332,7 +334,8 @@ service Airavata {
* @return project
*project data model will be returned
*
-  */
+   **/
+
   workspace_model.Project getProject (1: required security_model.AuthzToken 
authzToken, 2: required string projectId)
 throws (1: airavata_errors.InvalidRequestException ire,
 2: airavata_errors.AiravataClientException ace,
@@ -340,7 +343,7 @@ service Airavata {
 4: airavata_errors.ProjectNotFoundException pnfe,
 5: airavata_errors.AuthorizationException ae)
 
-/**
+   /**
* Delete a Project
*This method is used to delete an existing Project
*
@@ -350,7 +353,7 @@ service Airavata {
* @return boolean
*Boolean identifier for the success or failure of the deletion 
operation.
*
-  */
+   **/
 
   bool deleteProject (1: required security_model.AuthzToken authzToken, 2: 
required string projectId)
   throws (1: airavata_errors.InvalidRequestException ire,
@@ -359,19 +362,24 @@ service Airavata {
   4: airavata_errors.ProjectNotFoundException pnfe,
   5: airavata_errors.AuthorizationException ae)
 
- /**
+   /**
* Get all Project by user with pagination. Results will be ordered based
* on creation time DESC
*
* @param gatewayId
*The identifier for the requested gateway.
+   *
* @param userName
*The identifier of the user
+   *
* @param limit
*The amount results to be fetched
+   *
* @param offset
*The starting point of the results to be fetched
- **/
+   *
+   **/
+
   list getUserProjects(1: required 
security_model.AuthzToken authzToken,
2: required string 
gatewayId,
3: required string userName,
@@ -382,7 +390,7 @@ service Airavata {
 3: airavata_errors.AiravataSystemException ase,
 

[2/4] airavata git commit: Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata

[eroma]

Merge branch 'master' of https://git-wip-us.apache.org/repos/asf/airavata


Project: http://git-wip-us.apache.org/repos/asf/airavata/repo
Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/9462bd18
Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/9462bd18
Diff: http://git-wip-us.apache.org/repos/asf/airavata/diff/9462bd18

Branch: refs/heads/master
Commit: 9462bd184566977462fd701450844ed389be06f6
Parents: 7ea88a2 a513dcd
Author: Eroma Abeysinghe 
Authored: Wed Dec 16 09:36:04 2015 -0500
Committer: Eroma Abeysinghe 
Committed: Wed Dec 16 09:36:04 2015 -0500

--
 .../server/handler/AiravataServerHandler.java   | 7 +-
 .../api/server/handler/utils/DataCatInit.java   |   315 +
 .../java/org/apache/airavata/api/Airavata.java  |   279 +-
 .../airavata/api/airavata_apiConstants.java | 4 +-
 .../org/apache/airavata/model/Workflow.java |  1062 ++
 .../ApplicationDeploymentDescription.java   |  1937 +++
 .../appdeployment/ApplicationModule.java|   745 +
 .../ApplicationParallelismType.java |90 +
 .../appcatalog/appdeployment/CommandObject.java |   525 +
 .../appcatalog/appdeployment/SetEnvPaths.java   |   629 +
 .../ApplicationInterfaceDescription.java|  1114 ++
 .../appcatalog/computeresource/BatchQueue.java  |  1029 ++
 .../computeresource/CloudJobSubmission.java |   953 ++
 .../ComputeResourceDescription.java |  1821 ++
 .../appcatalog/computeresource/FileSystems.java |87 +
 .../computeresource/GlobusJobSubmission.java|   688 +
 .../computeresource/JobManagerCommand.java  |   102 +
 .../computeresource/JobSubmissionInterface.java |   637 +
 .../computeresource/JobSubmissionProtocol.java  |90 +
 .../computeresource/LOCALSubmission.java|   643 +
 .../appcatalog/computeresource/MonitorMode.java |79 +
 .../computeresource/ProviderName.java   |69 +
 .../computeresource/ResourceJobManager.java |   933 +
 .../computeresource/ResourceJobManagerType.java |90 +
 .../computeresource/SSHJobSubmission.java   |  1146 ++
 .../computeresource/UnicoreJobSubmission.java   |   637 +
 .../ComputeResourcePreference.java  |  1329 ++
 .../gatewayprofile/GatewayResourceProfile.java  |   854 +
 .../gatewayprofile/StoragePreference.java   |   733 +
 .../StorageResourceDescription.java |   905 +
 .../airavata/model/application/io/DataType.java |78 +
 .../application/io/InputDataObjectType.java |  1493 ++
 .../application/io/OutputDataObjectType.java|  1393 ++
 .../airavata/model/commons/ErrorModel.java  |   991 ++
 .../model/commons/ValidationResults.java|   562 +
 .../airavata/model/commons/ValidatorResult.java |   525 +
 .../commons/airavata_commonsConstants.java  |58 +
 .../airavata/model/data/movement/DMType.java|62 +
 .../data/movement/DataMovementInterface.java|   637 +
 .../data/movement/DataMovementProtocol.java |87 +
 .../data/movement/GridFTPDataMovement.java  |   687 +
 .../model/data/movement/LOCALDataMovement.java  |   420 +
 .../model/data/movement/SCPDataMovement.java|   754 +
 .../model/data/movement/SecurityProtocol.java   |88 +
 .../data/movement/UnicoreDataMovement.java  |   635 +
 .../data/resource/ReplicaLocationModel.java |   462 +
 .../model/data/resource/ResourceModel.java  |   684 +
 .../model/error/AiravataClientException.java|   550 +
 .../airavata/model/error/AiravataErrorType.java |99 +
 .../model/error/AiravataSystemException.java|   545 +
 .../model/error/AuthenticationException.java|   413 +
 .../model/error/AuthorizationException.java |   413 +
 .../error/ExperimentNotFoundException.java  |   415 +
 .../model/error/InvalidRequestException.java|   414 +
 .../model/error/LaunchValidationException.java  |   524 +
 .../model/error/ProjectNotFoundException.java   |   413 +
 .../airavata/model/error/TimedOutException.java |   305 +
 .../airavata/model/error/ValidationResults.java |   562 +
 .../airavata/model/error/ValidatorResult.java   |   518 +
 .../model/experiment/ExperimentModel.java   |  2504 +++
 .../experiment/ExperimentSearchFields.java  |77 +
 .../model/experiment/ExperimentStatistics.java  |  1855 ++
 .../experiment/ExperimentSummaryModel.java  |  1448 ++
 .../model/experiment/ExperimentType.java|62 +
 .../experiment/UserConfigurationDataModel.java  |  1148 ++
 .../org/apache/airavata/model/job/JobModel.java |  1566 ++
 .../event/ExperimentStatusChangeEvent.java  |   626 +
 .../model/messaging/event/JobIdentifier.java|   812 +
 .../messaging/event/JobStatusChangeEvent.java   |   530 +
 .../event/JobStatusChangeRequestEvent.java  |   530 +
 .../airavata/model/messaging/event/Message.java |   870 +
 .../model/messaging/event/MessageLevel.java |68 +
 

[3/4] airavata git commit: Adding descriptions to thirft API methods

[eroma]

Adding descriptions to thirft API methods


Project: http://git-wip-us.apache.org/repos/asf/airavata/repo
Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/4c8d3967
Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/4c8d3967
Diff: http://git-wip-us.apache.org/repos/asf/airavata/diff/4c8d3967

Branch: refs/heads/master
Commit: 4c8d396745b1ed13c3fe7ff17f16aff012cd9ac4
Parents: 9462bd1
Author: Eroma Abeysinghe 
Authored: Wed Dec 16 09:42:35 2015 -0500
Committer: Eroma Abeysinghe 
Committed: Wed Dec 16 09:42:35 2015 -0500

--
 .../airavata-apis/airavata_api.thrift| 15 ++-
 1 file changed, 14 insertions(+), 1 deletion(-)
--


http://git-wip-us.apache.org/repos/asf/airavata/blob/4c8d3967/thrift-interface-descriptions/airavata-apis/airavata_api.thrift
--
diff --git a/thrift-interface-descriptions/airavata-apis/airavata_api.thrift 
b/thrift-interface-descriptions/airavata-apis/airavata_api.thrift
index 928af6b..179a842 100644
--- a/thrift-interface-descriptions/airavata-apis/airavata_api.thrift
+++ b/thrift-interface-descriptions/airavata-apis/airavata_api.thrift
@@ -304,7 +304,13 @@ service Airavata {
   4: airavata_errors.AuthorizationException ae)
 
   /**
-   * Update a Project
+   * Update an Existing Project
+   *
+   * @param projectId
+   *The projectId of the project needed an update.
+   *
+   * @return void
+   *Currently this does not return any value.
*
   */
   void updateProject (1: required security_model.AuthzToken authzToken,
@@ -318,6 +324,13 @@ service Airavata {
 
 /**
* Get a Project by ID
+   *This method is to obtain a project by providing a projectId
+   *
+   * @param projectId
+   *projectId of the project you require
+   *
+   * @return project
+   *project data model will be returned
*
   */
   workspace_model.Project getProject (1: required security_model.AuthzToken 
authzToken, 2: required string projectId)

[1/4] airavata git commit: Adding descriptions to thirft API methods

[eroma]

Repository: airavata
Updated Branches:
  refs/heads/master a513dcdeb -> d8987244b


Adding descriptions to thirft API methods


Project: http://git-wip-us.apache.org/repos/asf/airavata/repo
Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/7ea88a2b
Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/7ea88a2b
Diff: http://git-wip-us.apache.org/repos/asf/airavata/diff/7ea88a2b

Branch: refs/heads/master
Commit: 7ea88a2b91cebb313a6484fdf24674ce79bc552d
Parents: a059fbb
Author: Eroma Abeysinghe 
Authored: Wed Dec 16 09:24:00 2015 -0500
Committer: Eroma Abeysinghe 
Committed: Wed Dec 16 09:24:00 2015 -0500

--
 .../airavata-apis/airavata_api.thrift   | 27 
 1 file changed, 27 insertions(+)
--


http://git-wip-us.apache.org/repos/asf/airavata/blob/7ea88a2b/thrift-interface-descriptions/airavata-apis/airavata_api.thrift
--
diff --git a/thrift-interface-descriptions/airavata-apis/airavata_api.thrift 
b/thrift-interface-descriptions/airavata-apis/airavata_api.thrift
index bd8e14e..928af6b 100644
--- a/thrift-interface-descriptions/airavata-apis/airavata_api.thrift
+++ b/thrift-interface-descriptions/airavata-apis/airavata_api.thrift
@@ -106,6 +106,8 @@ service Airavata {
* @return gateway
*Modified gateway obejct.
*
+   * @exception AiravataClientException
+   *
**/
 
   void updateGateway(1: required security_model.AuthzToken authzToken, 2: 
required string gatewayId, 3: required workspace_model.Gateway updatedGateway)
@@ -158,6 +160,20 @@ service Airavata {
  3: airavata_errors.AiravataSystemException ase,
  4: airavata_errors.AuthorizationException ae)
 
+/**
+* Check for the Existance of a Gateway within Airavata
+*
+* @param gatewayId
+*   Provide the gatewayId of the gateway you want to check the existancy
+*
+* @return boolean
+*   Boolean idetifier for the existance or non-existane of the gatewayId
+*
+* @return gatewayId
+*   return the gatewayId of the existing gateway.
+*
+**/
+
   bool isGatewayExist(1: required security_model.AuthzToken authzToken, 2: 
required string gatewayId)
throws (1: airavata_errors.InvalidRequestException ire,
2: airavata_errors.AiravataClientException ace,
@@ -251,6 +267,17 @@ service Airavata {
  2: airavata_errors.AiravataClientException ace,
  3: airavata_errors.AiravataSystemException ase)
 
+/**
+* Delete a Gateway
+*
+* @param gatewayId
+*The gateway Id of the Gateway to be deleted.
+*
+* @return boolean
+*Boolean identifier for the success or failure of the deletion 
operation.
+*
+**/
+
   bool deleteSSHPubKey (1: required security_model.AuthzToken authzToken,
   2: required string airavataCredStoreToken,
   3: required string gatewayId)

[4/4] airavata git commit: Adding descriptions to thirft API methods

[eroma]

Adding descriptions to thirft API methods


Project: http://git-wip-us.apache.org/repos/asf/airavata/repo
Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/d8987244
Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/d8987244
Diff: http://git-wip-us.apache.org/repos/asf/airavata/diff/d8987244

Branch: refs/heads/master
Commit: d8987244b58c030c468d55158a76e9bf52f41250
Parents: 4c8d396
Author: Eroma Abeysinghe 
Authored: Wed Dec 16 09:44:34 2015 -0500
Committer: Eroma Abeysinghe 
Committed: Wed Dec 16 09:44:34 2015 -0500

--
 .../airavata-apis/airavata_api.thrift   | 12 
 1 file changed, 12 insertions(+)
--


http://git-wip-us.apache.org/repos/asf/airavata/blob/d8987244/thrift-interface-descriptions/airavata-apis/airavata_api.thrift
--
diff --git a/thrift-interface-descriptions/airavata-apis/airavata_api.thrift 
b/thrift-interface-descriptions/airavata-apis/airavata_api.thrift
index 179a842..d49cc95 100644
--- a/thrift-interface-descriptions/airavata-apis/airavata_api.thrift
+++ b/thrift-interface-descriptions/airavata-apis/airavata_api.thrift
@@ -340,6 +340,18 @@ service Airavata {
 4: airavata_errors.ProjectNotFoundException pnfe,
 5: airavata_errors.AuthorizationException ae)
 
+/**
+   * Delete a Project
+   *This method is used to delete an existing Project
+   *
+   * @param projectId
+   *projectId of the project you want to delete
+   *
+   * @return boolean
+   *Boolean identifier for the success or failure of the deletion 
operation.
+   *
+  */
+
   bool deleteProject (1: required security_model.AuthzToken authzToken, 2: 
required string projectId)
   throws (1: airavata_errors.InvalidRequestException ire,
   2: airavata_errors.AiravataClientException ace,

svn commit: r975704 - /websites/staging/airavata/trunk/content/

[buildbot]

Author: buildbot
Date: Wed Dec 16 16:25:48 2015
New Revision: 975704

Log:
Staging update by buildbot for airavata

Modified:
websites/staging/airavata/trunk/content/   (props changed)

Propchange: websites/staging/airavata/trunk/content/
--
--- cms:source-revision (original)
+++ cms:source-revision Wed Dec 16 16:25:48 2015
@@ -1 +1 @@
-1718757
+1720387

svn commit: r1720388 [3/5] - /airavata/site/trunk/content/documentation/api-docs/0.16/

[smarru]

Added: 
airavata/site/trunk/content/documentation/api-docs/0.16/airavata_commons.html
URL: 
http://svn.apache.org/viewvc/airavata/site/trunk/content/documentation/api-docs/0.16/airavata_commons.html?rev=1720388=auto
==
--- 
airavata/site/trunk/content/documentation/api-docs/0.16/airavata_commons.html 
(added)
+++ 
airavata/site/trunk/content/documentation/api-docs/0.16/airavata_commons.html 
Wed Dec 16 16:25:38 2015
@@ -0,0 +1,44 @@
+http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd;>
+http://www.w3.org/1999/xhtml;>
+
+
+
+Thrift module: airavata_commons
+
+Thrift module: airavata_commons
+ModuleServicesData 
typesConstants
+
+airavata_commons
+ErrorModel
+ValidationResults
+ValidatorResult
+
+DEFAULT_ID
+
+
+Constants
+ConstantTypeValue
+DEFAULT_IDstring"DO_NOT_SET_AT_CLIENTS"Data structures
+Struct: ErrorModel
+KeyFieldTypeDescriptionRequirednessDefault
 value
+1errorIdstringrequired"DO_NOT_SET_AT_CLIENTS"
+2creationTimei64optional
+3actualErrorMessagestringoptional
+4userFriendlyMessagestringoptional
+5transientOrPersistentbooloptionalfalse
+6rootCauseErrorIdListliststringoptional
+Struct: ValidatorResult
+KeyFieldTypeDescriptionRequirednessDefault
 value
+1resultboolrequired
+2errorDetailsstringoptional
+This data structure can be used to store the validation results
+captured during validation step and during the launchExperiment
+operation it can be easilly checked to see the errors occured
+during the experiment launch operation
+
+Struct: 
ValidationResults
+KeyFieldTypeDescriptionRequirednessDefault
 value
+1validationStateboolrequired
+2validationResultListlistValidatorResultrequired
+

Added: 
airavata/site/trunk/content/documentation/api-docs/0.16/airavata_data_models.html
URL: 
http://svn.apache.org/viewvc/airavata/site/trunk/content/documentation/api-docs/0.16/airavata_data_models.html?rev=1720388=auto
==
--- 
airavata/site/trunk/content/documentation/api-docs/0.16/airavata_data_models.html
 (added)
+++ 
airavata/site/trunk/content/documentation/api-docs/0.16/airavata_data_models.html
 Wed Dec 16 16:25:38 2015
@@ -0,0 +1,16 @@
+http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd;>
+http://www.w3.org/1999/xhtml;>
+
+
+
+Thrift module: airavata_data_models
+
+Thrift module: airavata_data_models
+ModuleServicesData 
typesConstants
+
+airavata_data_models
+
+
+
+

Added: 
airavata/site/trunk/content/documentation/api-docs/0.16/airavata_errors.html
URL: 
http://svn.apache.org/viewvc/airavata/site/trunk/content/documentation/api-docs/0.16/airavata_errors.html?rev=1720388=auto
==
--- 
airavata/site/trunk/content/documentation/api-docs/0.16/airavata_errors.html 
(added)
+++ 
airavata/site/trunk/content/documentation/api-docs/0.16/airavata_errors.html 
Wed Dec 16 16:25:38 2015
@@ -0,0 +1,143 @@
+http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd;>
+http://www.w3.org/1999/xhtml;>
+
+
+
+Thrift module: airavata_errors
+
+Thrift module: airavata_errors
+ModuleServicesData 
typesConstants
+
+airavata_errors
+AiravataClientException
+AiravataErrorType
+AiravataSystemException
+AuthenticationException
+AuthorizationException
+ExperimentNotFoundException
+InvalidRequestException
+LaunchValidationException
+ProjectNotFoundException
+TimedOutException
+ValidationResults
+ValidatorResult
+
+
+
+Enumerations
+Enumeration: 
AiravataErrorType
+A list of Airavata API Error Message Types
+
+ UNKNOWN: No information available about the error
+  
+ PERMISSION_DENIED: Not permitted to perform action
+
+ INTERNAL_ERROR: Unexpected problem with the service
+
+ AUTHENTICATION_FAILURE: The client failed to authenticate.
+
+ INVALID_AUTHORIZATION: Security Token and/or Username and/or password is 
incorrect
+  
+ AUTHORIZATION_EXPIRED: Authentication token expired
+ 
+ UNKNOWN_GATEWAY_ID: The gateway is not registered with Airavata.
+
+ UNSUPPORTED_OPERATION: Operation denied because it is currently unsupported.
+
+UNKNOWN0
+
+PERMISSION_DENIED1
+
+INTERNAL_ERROR2
+
+AUTHENTICATION_FAILURE3
+
+INVALID_AUTHORIZATION4
+
+AUTHORIZATION_EXPIRED5
+
+UNKNOWN_GATEWAY_ID6
+
+UNSUPPORTED_OPERATION7
+
+
+Data structures
+Exception: 
ExperimentNotFoundException
+KeyFieldTypeDescriptionRequirednessDefault
 value
+1messagestringrequired
+This exception is thrown when a client asks to perform an 
operation on an experiment that does not exist.
+
+identifier:  A description of the experiment that was not found on the server.
+
+key:  The value passed from the client in the identifier, which was not found.
+Exception: ProjectNotFoundException
+KeyFieldTypeDescriptionRequirednessDefault
 value
+1messagestringrequired
+1:  optional  string identifier,
+2:  optional  string key
+
+Exception: InvalidRequestException
+KeyFieldTypeDescriptionRequirednessDefault
 value
+1messagestringrequired
+This exception is thrown for 

svn commit: r1720388 [2/5] - /airavata/site/trunk/content/documentation/api-docs/0.16/

[smarru]

Added: airavata/site/trunk/content/documentation/api-docs/0.16/airavata_api.html
URL: 
http://svn.apache.org/viewvc/airavata/site/trunk/content/documentation/api-docs/0.16/airavata_api.html?rev=1720388=auto
==
--- airavata/site/trunk/content/documentation/api-docs/0.16/airavata_api.html 
(added)
+++ airavata/site/trunk/content/documentation/api-docs/0.16/airavata_api.html 
Wed Dec 16 16:25:38 2015
@@ -0,0 +1,2156 @@
+http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd;>
+http://www.w3.org/1999/xhtml;>
+
+
+
+Thrift module: airavata_api
+
+Thrift module: airavata_api
+Application Programming Interface definition for Apache Airavata Services.
+  this parent thrift file is contains all service interfaces. The data models 
are
+  described in respective thrift files.
+ModuleServicesData 
typesConstants
+
+airavata_apiAiravata
+
+addCloudJobSubmissionDetails
+addGateway
+addGatewayComputeResourcePreference
+addGatewayStoragePreference
+addGridFTPDataMovementDetails
+addLocalDataMovementDetails
+addLocalSubmissionDetails
+addSCPDataMovementDetails
+addSSHForkJobSubmissionDetails
+addSSHJobSubmissionDetails
+addUNICOREJobSubmissionDetails
+addUnicoreDataMovementDetails
+changeDataMovementPriorities
+changeDataMovementPriority
+changeJobSubmissionPriorities
+changeJobSubmissionPriority
+cloneExperiment
+createExperiment
+createProject
+deleteApplicationDeployment
+deleteApplicationInterface
+deleteApplicationModule
+deleteBatchQueue
+deleteComputeResource
+deleteDataMovementInterface
+deleteExperiment
+deleteGateway
+deleteGatewayComputeResourcePreference
+deleteGatewayResourceProfile
+deleteGatewayStoragePreference
+deleteJobSubmissionInterface
+deleteProject
+deleteResourceJobManager
+deleteSSHPubKey
+deleteStorageResource
+deleteWorkflow
+generateAndRegisterSSHKeys
+getAPIVersion
+getAllAppModules
+getAllApplicationDeployments
+getAllApplicationInterfaceNames
+getAllApplicationInterfaces
+getAllComputeResourceNames
+getAllGatewayComputeResourcePreferences
+getAllGatewayResourceProfiles
+getAllGatewaySSHPubKeys
+getAllGatewayStoragePreferences
+getAllGateways
+getAllStorageResourceNames
+getAllUserSSHPubKeys
+getAllWorkflows
+getAppModuleDeployedResources
+getApplicationDeployment
+getApplicationInputs
+getApplicationInterface
+getApplicationModule
+getApplicationOutputs
+getAvailableAppInterfaceComputeResources
+getCloudJobSubmission
+getComputeResource
+getDataResource
+getDetailedExperimentTree
+getExperiment
+getExperimentOutputs
+getExperimentStatistics
+getExperimentStatus
+getExperimentsInProject
+getGateway
+getGatewayComputeResourcePreference
+getGatewayResourceProfile
+getGatewayStoragePreference
+getGridFTPDataMovement
+getIntermediateOutputs
+getJobDetails
+getJobStatuses
+getLocalDataMovement
+getLocalJobSubmission
+getProject
+getResourceJobManager
+getSCPDataMovement
+getSSHJobSubmission
+getSSHPubKey
+getStorageResource
+getUnicoreDataMovement
+getUnicoreJobSubmission
+getUserExperiments
+getUserProjects
+getWorkflow
+getWorkflowTemplateId
+isGatewayExist
+isWorkflowExistWithName
+launchExperiment
+registerApplicationDeployment
+registerApplicationInterface
+registerApplicationModule
+registerComputeResource
+registerDataResource
+registerGatewayResourceProfile
+registerResourceJobManager
+registerStorageResource
+registerWorkflow
+removeDataResource
+searchExperiments
+searchExperimentsByApplication
+searchExperimentsByCreationTime
+searchExperimentsByDesc
+searchExperimentsByName
+searchExperimentsByStatus
+searchProjectsByProjectDesc
+searchProjectsByProjectName
+terminateExperiment
+updateApplicationDeployment
+updateApplicationInterface
+updateApplicationModule
+updateCloudJobSubmissionDetails
+updateComputeResource
+updateDataResource
+updateExperiment
+updateExperimentConfiguration
+updateGateway
+updateGatewayComputeResourcePreference
+updateGatewayResourceProfile
+updateGatewayStoragePreference
+updateGridFTPDataMovementDetails
+updateLocalDataMovementDetails
+updateLocalSubmissionDetails
+updateProject
+updateResourceJobManager
+updateResourceScheduleing
+updateSCPDataMovementDetails
+updateSSHJobSubmissionDetails
+updateStorageResource
+updateUnicoreDataMovementDetails
+updateUnicoreJobSubmissionDetails
+updateWorkflow
+validateExperiment
+
+
+
+AIRAVATA_API_VERSION
+
+
+Constants
+ConstantTypeValue
+AIRAVATA_API_VERSIONstring"0.16.0"Airavata Interface Versions depend upon this Thrift 
Interface File. When making changes, please edit the
+ Version Constants according to Semantic Versioning Specification (SemVer) 
http://semver.org.
+
+Note: The Airavata API version may be different from the Airavata software 
release versions.
+
+The Airavata API version is composed as a dot delimited string with major, 
minor, and patch level components.
+
+ - Major: Incremented for backward incompatible changes. An example would be 
changes to interfaces.
+ - Minor: Incremented for backward compatible changes. An example 

svn commit: r1720388 [5/5] - /airavata/site/trunk/content/documentation/api-docs/0.16/

[smarru]

Added: 
airavata/site/trunk/content/documentation/api-docs/0.16/workflow_data_model.html
URL: 
http://svn.apache.org/viewvc/airavata/site/trunk/content/documentation/api-docs/0.16/workflow_data_model.html?rev=1720388=auto
==
--- 
airavata/site/trunk/content/documentation/api-docs/0.16/workflow_data_model.html
 (added)
+++ 
airavata/site/trunk/content/documentation/api-docs/0.16/workflow_data_model.html
 Wed Dec 16 16:25:38 2015
@@ -0,0 +1,26 @@
+http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd;>
+http://www.w3.org/1999/xhtml;>
+
+
+
+Thrift module: workflow_data_model
+
+Thrift module: workflow_data_model
+ModuleServicesData 
typesConstants
+
+workflow_data_model
+Workflow
+
+
+
+Data structures
+Struct: Workflow
+KeyFieldTypeDescriptionRequirednessDefault
 value
+1templateIdstringrequired"DO_NOT_SET_AT_CLIENTS"
+2namestringrequired
+3graphstringoptional
+4imagebinaryoptional
+5workflowInputslistapplication_io_models.InputDataObjectTypeoptional
+6workflowOutputslistapplication_io_models.OutputDataObjectTypeoptional
+

Added: 
airavata/site/trunk/content/documentation/api-docs/0.16/workspace_model.html
URL: 
http://svn.apache.org/viewvc/airavata/site/trunk/content/documentation/api-docs/0.16/workspace_model.html?rev=1720388=auto
==
--- 
airavata/site/trunk/content/documentation/api-docs/0.16/workspace_model.html 
(added)
+++ 
airavata/site/trunk/content/documentation/api-docs/0.16/workspace_model.html 
Wed Dec 16 16:25:38 2015
@@ -0,0 +1,44 @@
+http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd;>
+http://www.w3.org/1999/xhtml;>
+
+
+
+Thrift module: workspace_model
+
+Thrift module: workspace_model
+ModuleServicesData 
typesConstants
+
+workspace_model
+Gateway
+Group
+Project
+User
+
+
+
+Data structures
+Struct: Group
+KeyFieldTypeDescriptionRequirednessDefault
 value
+1groupNamestringrequired
+2descriptionstringoptional
+Struct: 
Project
+KeyFieldTypeDescriptionRequirednessDefault
 value
+1projectIDstringrequired"DO_NOT_SET_AT_CLIENTS"
+2ownerstringrequired
+3namestringrequired
+4descriptionstringoptional
+5creationTimei64optional
+6sharedUsersliststringoptional
+7sharedGroupsliststringoptional
+Struct: 
User
+KeyFieldTypeDescriptionRequirednessDefault
 value
+1userNamestringrequired
+2groupListlistGroupoptional
+Struct: 
Gateway
+KeyFieldTypeDescriptionRequirednessDefault
 value
+1gatewayIdstringrequired
+2gatewayNamestringoptional
+3domainstringoptional
+4emailAddressstringoptional
+

airavata git commit: Adding descriptions to app catalog thirft API methods

[eroma]

Repository: airavata
Updated Branches:
  refs/heads/master 389268fad -> efa66f9ba


Adding descriptions to app catalog thirft API methods


Project: http://git-wip-us.apache.org/repos/asf/airavata/repo
Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/efa66f9b
Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/efa66f9b
Diff: http://git-wip-us.apache.org/repos/asf/airavata/diff/efa66f9b

Branch: refs/heads/master
Commit: efa66f9baca32c3e3b95c3e8688140b59b6522e1
Parents: 389268f
Author: Eroma Abeysinghe 
Authored: Wed Dec 16 11:18:50 2015 -0500
Committer: Eroma Abeysinghe 
Committed: Wed Dec 16 11:18:50 2015 -0500

--
 .../airavata-apis/airavata_api.thrift   | 40 
 1 file changed, 32 insertions(+), 8 deletions(-)
--


http://git-wip-us.apache.org/repos/asf/airavata/blob/efa66f9b/thrift-interface-descriptions/airavata-apis/airavata_api.thrift
--
diff --git a/thrift-interface-descriptions/airavata-apis/airavata_api.thrift 
b/thrift-interface-descriptions/airavata-apis/airavata_api.thrift
index 9c55330..336eb0b 100644
--- a/thrift-interface-descriptions/airavata-apis/airavata_api.thrift
+++ b/thrift-interface-descriptions/airavata-apis/airavata_api.thrift
@@ -2268,6 +2268,7 @@ service Airavata {
 *  @return GridFTPDataMovement instance
 *
 **/
+
   data_movement_models.GridFTPDataMovement getGridFTPDataMovement(1: required 
security_model.AuthzToken authzToken, 2: required string dataMovementId)
 throws (1: airavata_errors.InvalidRequestException ire,
 2: airavata_errors.AiravataClientException ace,
@@ -2288,6 +2289,7 @@ service Airavata {
*   Returns a success/failure of the change.
*
**/
+
   bool changeJobSubmissionPriority(1: required security_model.AuthzToken 
authzToken, 2: required string jobSubmissionInterfaceId,
 3: required i32 newPriorityOrder)
throws (1: airavata_errors.InvalidRequestException ire,
@@ -2295,7 +2297,7 @@ service Airavata {
 3: airavata_errors.AiravataSystemException ase,
 4: airavata_errors.AuthorizationException ae)
 
-  /**
+   /**
* Change the priority of a given data movement interface
*
* @param dataMovementInterfaceId
@@ -2307,7 +2309,8 @@ service Airavata {
* @return status
*   Returns a success/failure of the change.
*
-  */
+   **/
+
   bool changeDataMovementPriority(1: required security_model.AuthzToken 
authzToken, 2: required string dataMovementInterfaceId,
 3: required i32 newPriorityOrder)
throws (1: airavata_errors.InvalidRequestException ire,
@@ -2325,13 +2328,14 @@ service Airavata {
*   Returns a success/failure of the changes.
*
   */
+
   bool changeJobSubmissionPriorities(1: required security_model.AuthzToken 
authzToken, 2: required map jobSubmissionPriorityMap)
throws (1: airavata_errors.InvalidRequestException ire,
 2: airavata_errors.AiravataClientException ace,
 3: airavata_errors.AiravataSystemException ase,
 4: airavata_errors.AuthorizationException ae)
 
-  /**
+   /**
* Change the priorities of a given set of data movement interfaces
*
* @param dataMovementPriorityMap
@@ -2340,14 +2344,15 @@ service Airavata {
* @return status
*   Returns a success/failure of the changes.
*
-  */
+   **/
+
   bool changeDataMovementPriorities(1: required security_model.AuthzToken 
authzToken, 2: required map dataMovementPriorityMap)
throws (1: airavata_errors.InvalidRequestException ire,
 2: airavata_errors.AiravataClientException ace,
 3: airavata_errors.AiravataSystemException ase,
 4: airavata_errors.AuthorizationException ae)
 
-  /**
+   /**
* Delete a given job submisison interface
*
* @param jobSubmissionInterfaceId
@@ -2356,7 +2361,8 @@ service Airavata {
* @return status
*   Returns a success/failure of the deletion.
*
-  */
+   **/
+
   bool deleteJobSubmissionInterface(1: required security_model.AuthzToken 
authzToken, 2: required string computeResourceId,
 3: required string jobSubmissionInterfaceId)
throws (1: airavata_errors.InvalidRequestException ire,
@@ -2364,7 +2370,7 @@ service Airavata {
 3: airavata_errors.AiravataSystemException ase,
 4: airavata_errors.AuthorizationException ae)
 
-  /**
+   /**
* Delete a given data movement interface
*
* @param dataMovementInterfaceId
@@ -2373,7 +2379,8 @@ service Airavata {
* @return status
*   Returns a success/failure of the deletion.
*
-  */
+   **/
+
   bool deleteDataMovementInterface(1: required 

svn commit: r1720388 [1/5] - /airavata/site/trunk/content/documentation/api-docs/0.16/

[smarru]

Author: smarru
Date: Wed Dec 16 16:25:38 2015
New Revision: 1720388

URL: http://svn.apache.org/viewvc?rev=1720388=rev
Log:
adding 0.16 documentation

Added:
airavata/site/trunk/content/documentation/api-docs/0.16/
airavata/site/trunk/content/documentation/api-docs/0.16/airavata_api.html

airavata/site/trunk/content/documentation/api-docs/0.16/airavata_commons.html

airavata/site/trunk/content/documentation/api-docs/0.16/airavata_data_models.html
airavata/site/trunk/content/documentation/api-docs/0.16/airavata_errors.html

airavata/site/trunk/content/documentation/api-docs/0.16/application_deployment_model.html

airavata/site/trunk/content/documentation/api-docs/0.16/application_interface_model.html

airavata/site/trunk/content/documentation/api-docs/0.16/application_io_models.html

airavata/site/trunk/content/documentation/api-docs/0.16/compute_resource_model.html

airavata/site/trunk/content/documentation/api-docs/0.16/data_movement_models.html

airavata/site/trunk/content/documentation/api-docs/0.16/experiment_model.html

airavata/site/trunk/content/documentation/api-docs/0.16/gateway_resource_profile_model.html
airavata/site/trunk/content/documentation/api-docs/0.16/index.html
airavata/site/trunk/content/documentation/api-docs/0.16/job_model.html

airavata/site/trunk/content/documentation/api-docs/0.16/messaging_events.html
airavata/site/trunk/content/documentation/api-docs/0.16/process_model.html

airavata/site/trunk/content/documentation/api-docs/0.16/replica_catalog_models.html

airavata/site/trunk/content/documentation/api-docs/0.16/scheduling_model.html
airavata/site/trunk/content/documentation/api-docs/0.16/security_model.html
airavata/site/trunk/content/documentation/api-docs/0.16/status_models.html

airavata/site/trunk/content/documentation/api-docs/0.16/storage_resource_model.html
airavata/site/trunk/content/documentation/api-docs/0.16/style.css
airavata/site/trunk/content/documentation/api-docs/0.16/task_model.html

airavata/site/trunk/content/documentation/api-docs/0.16/workflow_data_model.html
airavata/site/trunk/content/documentation/api-docs/0.16/workspace_model.html

svn commit: r1720388 [4/5] - /airavata/site/trunk/content/documentation/api-docs/0.16/

[smarru]

Added: airavata/site/trunk/content/documentation/api-docs/0.16/index.html
URL: 
http://svn.apache.org/viewvc/airavata/site/trunk/content/documentation/api-docs/0.16/index.html?rev=1720388=auto
==
--- airavata/site/trunk/content/documentation/api-docs/0.16/index.html (added)
+++ airavata/site/trunk/content/documentation/api-docs/0.16/index.html Wed Dec 
16 16:25:38 2015
@@ -0,0 +1,340 @@
+
+
+All Thrift declarations
+
+All Thrift declarations
+ModuleServicesData 
typesConstants
+
+airavata_apiAiravata
+
+addCloudJobSubmissionDetails
+addGateway
+addGatewayComputeResourcePreference
+addGatewayStoragePreference
+addGridFTPDataMovementDetails
+addLocalDataMovementDetails
+addLocalSubmissionDetails
+addSCPDataMovementDetails
+addSSHForkJobSubmissionDetails
+addSSHJobSubmissionDetails
+addUNICOREJobSubmissionDetails
+addUnicoreDataMovementDetails
+changeDataMovementPriorities
+changeDataMovementPriority
+changeJobSubmissionPriorities
+changeJobSubmissionPriority
+cloneExperiment
+createExperiment
+createProject
+deleteApplicationDeployment
+deleteApplicationInterface
+deleteApplicationModule
+deleteBatchQueue
+deleteComputeResource
+deleteDataMovementInterface
+deleteExperiment
+deleteGateway
+deleteGatewayComputeResourcePreference
+deleteGatewayResourceProfile
+deleteGatewayStoragePreference
+deleteJobSubmissionInterface
+deleteProject
+deleteResourceJobManager
+deleteSSHPubKey
+deleteStorageResource
+deleteWorkflow
+generateAndRegisterSSHKeys
+getAPIVersion
+getAllAppModules
+getAllApplicationDeployments
+getAllApplicationInterfaceNames
+getAllApplicationInterfaces
+getAllComputeResourceNames
+getAllGatewayComputeResourcePreferences
+getAllGatewayResourceProfiles
+getAllGatewaySSHPubKeys
+getAllGatewayStoragePreferences
+getAllGateways
+getAllStorageResourceNames
+getAllUserSSHPubKeys
+getAllWorkflows
+getAppModuleDeployedResources
+getApplicationDeployment
+getApplicationInputs
+getApplicationInterface
+getApplicationModule
+getApplicationOutputs
+getAvailableAppInterfaceComputeResources
+getCloudJobSubmission
+getComputeResource
+getDataResource
+getDetailedExperimentTree
+getExperiment
+getExperimentOutputs
+getExperimentStatistics
+getExperimentStatus
+getExperimentsInProject
+getGateway
+getGatewayComputeResourcePreference
+getGatewayResourceProfile
+getGatewayStoragePreference
+getGridFTPDataMovement
+getIntermediateOutputs
+getJobDetails
+getJobStatuses
+getLocalDataMovement
+getLocalJobSubmission
+getProject
+getResourceJobManager
+getSCPDataMovement
+getSSHJobSubmission
+getSSHPubKey
+getStorageResource
+getUnicoreDataMovement
+getUnicoreJobSubmission
+getUserExperiments
+getUserProjects
+getWorkflow
+getWorkflowTemplateId
+isGatewayExist
+isWorkflowExistWithName
+launchExperiment
+registerApplicationDeployment
+registerApplicationInterface
+registerApplicationModule
+registerComputeResource
+registerDataResource
+registerGatewayResourceProfile
+registerResourceJobManager
+registerStorageResource
+registerWorkflow
+removeDataResource
+searchExperiments
+searchExperimentsByApplication
+searchExperimentsByCreationTime
+searchExperimentsByDesc
+searchExperimentsByName
+searchExperimentsByStatus
+searchProjectsByProjectDesc
+searchProjectsByProjectName
+terminateExperiment
+updateApplicationDeployment
+updateApplicationInterface
+updateApplicationModule
+updateCloudJobSubmissionDetails
+updateComputeResource
+updateDataResource
+updateExperiment
+updateExperimentConfiguration
+updateGateway
+updateGatewayComputeResourcePreference
+updateGatewayResourceProfile
+updateGatewayStoragePreference
+updateGridFTPDataMovementDetails
+updateLocalDataMovementDetails
+updateLocalSubmissionDetails
+updateProject
+updateResourceJobManager
+updateResourceScheduleing
+updateSCPDataMovementDetails
+updateSSHJobSubmissionDetails
+updateStorageResource
+updateUnicoreDataMovementDetails
+updateUnicoreJobSubmissionDetails
+updateWorkflow
+validateExperiment
+
+
+
+AIRAVATA_API_VERSION
+
+
+airavata_errors
+AiravataClientException
+AiravataErrorType
+AiravataSystemException
+AuthenticationException
+AuthorizationException
+ExperimentNotFoundException
+InvalidRequestException
+LaunchValidationException
+ProjectNotFoundException
+TimedOutException
+ValidationResults
+ValidatorResult
+
+
+
+experiment_model
+ExperimentModel
+ExperimentSearchFields
+ExperimentStatistics
+ExperimentSummaryModel
+ExperimentType
+UserConfigurationDataModel
+
+
+
+airavata_commons
+ErrorModel
+ValidationResults
+ValidatorResult
+
+DEFAULT_ID
+
+
+application_io_models
+DataType
+InputDataObjectType
+OutputDataObjectType
+
+
+
+compute_resource_model
+BatchQueue
+CloudJobSubmission
+ComputeResourceDescription
+DMType
+FileSystems
+GlobusJobSubmission
+JobManagerCommand
+JobSubmissionInterface
+JobSubmissionProtocol
+LOCALSubmission
+MonitorMode
+ProviderName
+ResourceJobManager
+ResourceJobManagerType
+SSHJobSubmission
+UnicoreJobSubmission
+
+
+
+data_movement_models
+DMType

svn commit: r975706 - /websites/production/airavata/content/

[smarru]

Author: smarru
Date: Wed Dec 16 16:27:42 2015
New Revision: 975706

Log:
publishing any pending changes

Added:
websites/production/airavata/content/
  - copied from r975705, websites/staging/airavata/trunk/content/

airavata git commit: Tests are failing with new thrift generated code, need to fix. Committing with build wokring without tetss

[smarru]

Repository: airavata
Updated Branches:
  refs/heads/master efa66f9ba -> 80d202785


Tests are failing with new thrift generated code, need to fix. Committing with 
build wokring without tetss


Project: http://git-wip-us.apache.org/repos/asf/airavata/repo
Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/80d20278
Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/80d20278
Diff: http://git-wip-us.apache.org/repos/asf/airavata/diff/80d20278

Branch: refs/heads/master
Commit: 80d202785f05f76fee6fa6461c38cfd759444740
Parents: efa66f9
Author: smarru 
Authored: Wed Dec 16 11:34:09 2015 -0500
Committer: smarru 
Committed: Wed Dec 16 11:34:09 2015 -0500

--
 .../server/handler/AiravataServerHandler.java   |   7 +-
 .../airavata/data/manager/DataManager.java  |  67 
 .../data/manager/DataManagerException.java  |  35 --
 .../data/manager/DataManagerFactory.java|  32 --
 .../airavata/data/manager/DataManagerImpl.java  |  92 --
 .../data/manager/DataManagerFactoryTest.java|  36 ---
 .../data/manager/DataManagerImptTest.java   | 141 
 .../airavata/data/manager/utils/AppCatInit.java | 320 ---
 .../data/manager/utils/DataCatInit.java | 315 --
 .../airavata-api/data_movement_models.thrift| 154 -
 .../airavata-api/data_resource_models.thrift|  45 ---
 11 files changed, 4 insertions(+), 1240 deletions(-)
--


http://git-wip-us.apache.org/repos/asf/airavata/blob/80d20278/airavata-api/airavata-api-server/src/main/java/org/apache/airavata/api/server/handler/AiravataServerHandler.java
--
diff --git 
a/airavata-api/airavata-api-server/src/main/java/org/apache/airavata/api/server/handler/AiravataServerHandler.java
 
b/airavata-api/airavata-api-server/src/main/java/org/apache/airavata/api/server/handler/AiravataServerHandler.java
index 52bfa80..d9121d8 100644
--- 
a/airavata-api/airavata-api-server/src/main/java/org/apache/airavata/api/server/handler/AiravataServerHandler.java
+++ 
b/airavata-api/airavata-api-server/src/main/java/org/apache/airavata/api/server/handler/AiravataServerHandler.java
@@ -72,9 +72,10 @@ import 
org.apache.airavata.registry.core.experiment.catalog.ExpCatResourceUtils;
 import 
org.apache.airavata.registry.core.experiment.catalog.impl.RegistryFactory;
 import org.apache.airavata.registry.cpi.*;
 import org.apache.airavata.registry.cpi.utils.Constants;
-import org.apache.airavata.data.catalog.core.DataManagerFactory;
-import org.apache.airavata.data.catalog.cpi.DataManager;
-import org.apache.airavata.data.catalog.cpi.DataManagerException;
+
+import org.apache.airavata.replica.catalog.core.DataManagerFactory;
+import org.apache.airavata.replica.catalog.cpi.DataManager;
+import org.apache.airavata.replica.catalog.cpi.DataManagerException;
 import org.apache.thrift.TException;
 import org.slf4j.Logger;
 import org.slf4j.LoggerFactory;

http://git-wip-us.apache.org/repos/asf/airavata/blob/80d20278/modules/data-manager/src/main/java/org/apache/airavata/data/manager/DataManager.java
--
diff --git 
a/modules/data-manager/src/main/java/org/apache/airavata/data/manager/DataManager.java
 
b/modules/data-manager/src/main/java/org/apache/airavata/data/manager/DataManager.java
deleted file mode 100644
index 7b046d5..000
--- 
a/modules/data-manager/src/main/java/org/apache/airavata/data/manager/DataManager.java
+++ /dev/null
@@ -1,67 +0,0 @@
-/*
- *
- * Licensed to the Apache Software Foundation (ASF) under one
- * or more contributor license agreements.  See the NOTICE file
- * distributed with this work for additional information
- * regarding copyright ownership.  The ASF licenses this file
- * to you under the Apache License, Version 2.0 (the
- * "License"); you may not use this file except in compliance
- * with the License.  You may obtain a copy of the License at
- *
- *   http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing,
- * software distributed under the License is distributed on an
- * "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
- * KIND, either express or implied.  See the License for the
- * specific language governing permissions and limitations
- * under the License.
- *
- */
-package org.apache.airavata.data.manager;
-
-import org.apache.airavata.model.data.resource.DataResourceModel;
-
-public interface DataManager {
-
-/**
- * To create a replica entry for an already existing file(s). This is how 
the system comes to know about already
- * existing resources
- * @param resource
- * @return
- */
-String publishDataResource(DataResourceModel resource) throws 
DataManagerException;
-
-