airavata-php-gateway git commit: AIRAVATA-1841 Only check if airavata up if user is authorized

2017-01-10 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/develop 4ece55fa2 -> 47fef07ee AIRAVATA-1841 Only check if airavata up if user is authorized Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gat

airavata-php-gateway git commit: AIRAVATA-1841 Completely log out user when airavata is down

2017-01-11 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/develop 47fef07ee -> fc04148bd AIRAVATA-1841 Completely log out user when airavata is down Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gatew

[10/10] airavata-php-gateway git commit: Merge branch 'AIRAVATA-1397-max-filesize-exceeded-uploads' into develop

2017-01-19 Thread machristie
Merge branch 'AIRAVATA-1397-max-filesize-exceeded-uploads' into develop This should fix AIRAVATA-1397 Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/bfd2c06d Tree: http://git-wip-us.apache.org/

[09/10] airavata-php-gateway git commit: AIRAVATA-1397 edit experiment: add updateList function

2017-01-19 Thread machristie
AIRAVATA-1397 edit experiment: add updateList function updateList function, which displays a list of optional upload files selected, was not there on the experiemnt edit page (was only on experiment create page). Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit:

[01/10] airavata-php-gateway git commit: AIRAVATA-1397 File size detection for opt. input files

2017-01-19 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/develop fc04148bd -> bfd2c06da AIRAVATA-1397 File size detection for opt. input files Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/co

[02/10] airavata-php-gateway git commit: AIRAVATA-1397 Display max upload file size in form

2017-01-19 Thread machristie
AIRAVATA-1397 Display max upload file size in form Also no longer using 'server-allowed'file-size' from pga_config.php. Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/d0af4e3b Tree: http://git-

[03/10] airavata-php-gateway git commit: AIRAVATA-1397 Couple small fixes I noticed

2017-01-19 Thread machristie
AIRAVATA-1397 Couple small fixes I noticed * fix for updating memory when editing an experiment * removing unused "selected-queue" form parameter Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/

[07/10] airavata-php-gateway git commit: AIRAVATA-1397 removed savedExp, clonedExp flags

2017-01-19 Thread machristie
AIRAVATA-1397 removed savedExp, clonedExp flags savedExp wasn't consistently applied, but rather than consistently applying it I removed this flag along with clonedExp since it doesn't appear to be needed. The only relevant fact is whether an existing experiment is being edited which is easily de

[08/10] airavata-php-gateway git commit: AIRAVATA-1397 Fixing editing optional upload files

2017-01-19 Thread machristie
AIRAVATA-1397 Fixing editing optional upload files Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/0edd8bdd Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/0edd8bdd Diff: h

[05/10] airavata-php-gateway git commit: AIRAVATA-1397 Set upload_max_filesize to 64M in .htaccess

2017-01-19 Thread machristie
AIRAVATA-1397 Set upload_max_filesize to 64M in .htaccess These settings in .htaccess override whatever is in /etc/php.ini. This provides a better out of the box default max upload size. Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.o

[04/10] airavata-php-gateway git commit: AIRAVATA-1397 Display error when file upload too big

2017-01-19 Thread machristie
AIRAVATA-1397 Display error when file upload too big Throws and displays error when file upload exceeds upload_max_filesize or any other error with uploading the file. Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airava

[06/10] airavata-php-gateway git commit: AIRAVATA-1397 Fix client side checking for opt input files

2017-01-19 Thread machristie
AIRAVATA-1397 Fix client side checking for opt input files Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/9e75b854 Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/9e75b854

airavata-php-gateway git commit: AIRAVATA-2223 Fix sharing disabled bugs

2017-01-20 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/develop fd292859d -> b68d9a8d8 AIRAVATA-2223 Fix sharing disabled bugs Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/b68d9a8d T

airavata-php-gateway git commit: AIRAVATA-2223 Remove $experiment_can_write check when sharing disabled

2017-01-20 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/develop b68d9a8d8 -> b0b5152e5 AIRAVATA-2223 Remove $experiment_can_write check when sharing disabled Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavat

[2/2] airavata git commit: AIRAVATA-2305 Removing duplicate Ansible scripts

2017-01-23 Thread machristie
AIRAVATA-2305 Removing duplicate Ansible scripts Project: http://git-wip-us.apache.org/repos/asf/airavata/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/306599f8 Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/306599f8 Diff: http://git-wip-us.apache.org/repos/asf/a

[1/2] airavata git commit: AIRAVATA-2305 Airavata deploy scripts

2017-01-23 Thread machristie
Repository: airavata Updated Branches: refs/heads/develop aae071177 -> e0fbde2b9 AIRAVATA-2305 Airavata deploy scripts Currently this deploys out updated code for api-orch and registry only Project: http://git-wip-us.apache.org/repos/asf/airavata/repo Commit: http://git-wip-us.apache.org/rep

airavata-php-gateway git commit: AIRAVATA-2223 Only load project when owned by user

2017-01-26 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/develop dc971cb41 -> 9b300d66c AIRAVATA-2223 Only load project when owned by user Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit

[16/21] airavata-php-gateway git commit: How to add brand logo

2017-02-01 Thread machristie
How to add brand logo Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/dc971cb4 Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/dc971cb4 Diff: http://git-wip-us.apache.org/r

[03/21] airavata-php-gateway git commit: AIRAVATA-1397 Couple small fixes I noticed

2017-02-01 Thread machristie
AIRAVATA-1397 Couple small fixes I noticed * fix for updating memory when editing an experiment * removing unused "selected-queue" form parameter Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/

[04/21] airavata-php-gateway git commit: AIRAVATA-1397 Display error when file upload too big

2017-02-01 Thread machristie
AIRAVATA-1397 Display error when file upload too big Throws and displays error when file upload exceeds upload_max_filesize or any other error with uploading the file. Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airava

[06/21] airavata-php-gateway git commit: AIRAVATA-1397 Fix client side checking for opt input files

2017-02-01 Thread machristie
AIRAVATA-1397 Fix client side checking for opt input files Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/9e75b854 Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/9e75b854

[05/21] airavata-php-gateway git commit: AIRAVATA-1397 Set upload_max_filesize to 64M in .htaccess

2017-02-01 Thread machristie
AIRAVATA-1397 Set upload_max_filesize to 64M in .htaccess These settings in .htaccess override whatever is in /etc/php.ini. This provides a better out of the box default max upload size. Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.o

[19/21] airavata-php-gateway git commit: fixing AIRAVATA-2269 : The gateway admin cannot get access to the gateway even with 'admin' role

2017-02-01 Thread machristie
fixing AIRAVATA-2269 : The gateway admin cannot get access to the gateway even with 'admin' role There is a bug in WSO2 IS which doest not return the admin role for the default admin user. Hence as a workaround we manually add it here. Project: http://git-wip-us.apache.org/repos/asf/airavata-p

[09/21] airavata-php-gateway git commit: AIRAVATA-1397 edit experiment: add updateList function

2017-02-01 Thread machristie
AIRAVATA-1397 edit experiment: add updateList function updateList function, which displays a list of optional upload files selected, was not there on the experiemnt edit page (was only on experiment create page). Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit:

[14/21] airavata-php-gateway git commit: Documentation for Theming added.

2017-02-01 Thread machristie
Documentation for Theming added. Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/998ac381 Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/998ac381 Diff: http://git-wip-us.a

[11/21] airavata-php-gateway git commit: updating thrift generated libraries

2017-02-01 Thread machristie
updating thrift generated libraries Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/fd292859 Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/fd292859 Diff: http://git-wip-u

[01/21] airavata-php-gateway git commit: AIRAVATA-1397 File size detection for opt. input files

2017-02-01 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/dreg-gateway fc04148bd -> dae6cd756 AIRAVATA-1397 File size detection for opt. input files Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gatew

[17/21] airavata-php-gateway git commit: AIRAVATA-2223 Only load project when owned by user

2017-02-01 Thread machristie
AIRAVATA-2223 Only load project when owned by user Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/9b300d66 Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/9b300d66 Diff: h

[07/21] airavata-php-gateway git commit: AIRAVATA-1397 removed savedExp, clonedExp flags

2017-02-01 Thread machristie
AIRAVATA-1397 removed savedExp, clonedExp flags savedExp wasn't consistently applied, but rather than consistently applying it I removed this flag along with clonedExp since it doesn't appear to be needed. The only relevant fact is whether an existing experiment is being edited which is easily de

[12/21] airavata-php-gateway git commit: AIRAVATA-2223 Fix sharing disabled bugs

2017-02-01 Thread machristie
AIRAVATA-2223 Fix sharing disabled bugs Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/b68d9a8d Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/b68d9a8d Diff: http://git-w

[21/21] airavata-php-gateway git commit: appending the last commit

2017-02-01 Thread machristie
appending the last commit Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/dae6cd75 Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/dae6cd75 Diff: http://git-wip-us.apache.o

[18/21] airavata-php-gateway git commit: fixing AIRAVATA-1885 : Cannot add data movement interface for a new storage resource as scigap admin. Page crashes in PGA

2017-02-01 Thread machristie
fixing AIRAVATA-1885 : Cannot add data movement interface for a new storage resource as scigap admin. Page crashes in PGA Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/d9cbd6c5 Tree: http://gi

[08/21] airavata-php-gateway git commit: AIRAVATA-1397 Fixing editing optional upload files

2017-02-01 Thread machristie
AIRAVATA-1397 Fixing editing optional upload files Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/0edd8bdd Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/0edd8bdd Diff: h

[15/21] airavata-php-gateway git commit: Brand logo modifications for theming.

2017-02-01 Thread machristie
Brand logo modifications for theming. Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/6e37d636 Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/6e37d636 Diff: http://git-wip

[02/21] airavata-php-gateway git commit: AIRAVATA-1397 Display max upload file size in form

2017-02-01 Thread machristie
AIRAVATA-1397 Display max upload file size in form Also no longer using 'server-allowed'file-size' from pga_config.php. Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/d0af4e3b Tree: http://git-

[20/21] airavata-php-gateway git commit: appending the last commit

2017-02-01 Thread machristie
appending the last commit Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/3c945375 Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/3c945375 Diff: http://git-wip-us.apache.o

[13/21] airavata-php-gateway git commit: AIRAVATA-2223 Remove $experiment_can_write check when sharing disabled

2017-02-01 Thread machristie
AIRAVATA-2223 Remove $experiment_can_write check when sharing disabled Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/b0b5152e Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/t

[10/21] airavata-php-gateway git commit: Merge branch 'AIRAVATA-1397-max-filesize-exceeded-uploads' into develop

2017-02-01 Thread machristie
Merge branch 'AIRAVATA-1397-max-filesize-exceeded-uploads' into develop This should fix AIRAVATA-1397 Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/bfd2c06d Tree: http://git-wip-us.apache.org/

airavata git commit: AIRAVATA-2305 Changing local deploy to assume already built distribution

2017-02-02 Thread machristie
Repository: airavata Updated Branches: refs/heads/develop 59c812ba1 -> 4beadefdc AIRAVATA-2305 Changing local deploy to assume already built distribution Project: http://git-wip-us.apache.org/repos/asf/airavata/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/4beadefd Tree:

airavata git commit: AIRAVATA-2305 Adding PGA deploy scripts

2017-02-02 Thread machristie
Repository: airavata Updated Branches: refs/heads/develop 4beadefdc -> 7a662756d AIRAVATA-2305 Adding PGA deploy scripts Project: http://git-wip-us.apache.org/repos/asf/airavata/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/7a662756 Tree: http://git-wip-us.apache.org/rep

[05/14] airavata git commit: adding dependancy for user-profile service in distribution pom

2017-02-02 Thread machristie
adding dependancy for user-profile service in distribution pom Project: http://git-wip-us.apache.org/repos/asf/airavata/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/baaed53a Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/baaed53a Diff: http://git-wip-us.apache.o

[13/14] airavata git commit: updating some external dependencies

2017-02-02 Thread machristie
updating some external dependencies Project: http://git-wip-us.apache.org/repos/asf/airavata/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/b642ce9d Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/b642ce9d Diff: http://git-wip-us.apache.org/repos/asf/airavata/diff/

[06/14] airavata git commit: adding user profile service to server module

2017-02-02 Thread machristie
adding user profile service to server module Project: http://git-wip-us.apache.org/repos/asf/airavata/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/c6ba43bf Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/c6ba43bf Diff: http://git-wip-us.apache.org/repos/asf/airav

[02/14] airavata git commit: making corrections to user profile service code

2017-02-02 Thread machristie
http://git-wip-us.apache.org/repos/asf/airavata/blob/8f6f2183/modules/user-profile/user-profile-stubs/src/main/java/org/apache/airavata/userprofile/crude/cpi/UserProfileCrudeService.java -- diff --git a/modules/user-profile/user-p

[12/14] airavata git commit: adding user profile client, which was accidently deleted in last commit

2017-02-02 Thread machristie
adding user profile client, which was accidently deleted in last commit Project: http://git-wip-us.apache.org/repos/asf/airavata/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/7aa0e2fb Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/7aa0e2fb Diff: http://git-wip-us

[10/14] airavata git commit: renaming classes and including userProfileSerive exception

2017-02-02 Thread machristie
http://git-wip-us.apache.org/repos/asf/airavata/blob/39e22204/modules/user-profile/user-profile-stubs/src/main/java/org/apache/airavata/userprofile/cpi/UserProfileService.java -- diff --git a/modules/user-profile/user-profile-stub

[04/14] airavata git commit: adding the server property file, which was left out in last commit

2017-02-02 Thread machristie
adding the server property file, which was left out in last commit Project: http://git-wip-us.apache.org/repos/asf/airavata/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/aa98eee4 Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/aa98eee4 Diff: http://git-wip-us.apac

[11/14] airavata git commit: renaming classes and including userProfileSerive exception

2017-02-02 Thread machristie
renaming classes and including userProfileSerive exception Project: http://git-wip-us.apache.org/repos/asf/airavata/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/39e22204 Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/39e22204 Diff: http://git-wip-us.apache.org/r

[03/14] airavata git commit: making corrections to user profile service code

2017-02-02 Thread machristie
making corrections to user profile service code Project: http://git-wip-us.apache.org/repos/asf/airavata/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/8f6f2183 Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/8f6f2183 Diff: http://git-wip-us.apache.org/repos/asf/ai

[08/14] airavata git commit: renaming classes and including userProfileSerive exception

2017-02-02 Thread machristie
http://git-wip-us.apache.org/repos/asf/airavata/blob/39e22204/modules/user-profile/user-profile-stubs/src/main/java/org/apache/airavata/userprofile/crude/cpi/UserProfileCrudeService.java -- diff --git a/modules/user-profile/user-p

[07/14] airavata git commit: renaming classes and including userProfileSerive exception

2017-02-02 Thread machristie
http://git-wip-us.apache.org/repos/asf/airavata/blob/39e22204/modules/user-profile/user-profile-stubs/src/main/java/org/apache/airavata/userprofile/crude/cpi/client/UserProfileServiceClientFactory.java -- diff --git a/modules/user

[09/14] airavata git commit: renaming classes and including userProfileSerive exception

2017-02-02 Thread machristie
http://git-wip-us.apache.org/repos/asf/airavata/blob/39e22204/modules/user-profile/user-profile-stubs/src/main/java/org/apache/airavata/userprofile/cpi/exception/UserProfileServiceException.java -- diff --git a/modules/user-profil

[14/14] airavata git commit: Merge branch 'userProfileService' of https://github.com/anujbhan/airavata into develop

2017-02-02 Thread machristie
Merge branch 'userProfileService' of https://github.com/anujbhan/airavata into develop This closes #94 NOTE: I commented out the USER_PROFILE service in ServerMain.java Project: http://git-wip-us.apache.org/repos/asf/airavata/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/

[01/14] airavata git commit: making corrections to user profile service code

2017-02-02 Thread machristie
Repository: airavata Updated Branches: refs/heads/develop 7a662756d -> 80dbaba6f http://git-wip-us.apache.org/repos/asf/airavata/blob/8f6f2183/modules/user-profile/user-profile-stubs/src/main/java/org/apache/airavata/userprofile/crude/cpi/user_profile_crud_cpiConstants.java

[1/2] airavata-php-gateway git commit: dreg theme

2017-02-03 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/dreg-gateway dae6cd756 -> e11970022 dreg theme Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/25339377 Tree: http://git-wip-us.a

[2/2] airavata-php-gateway git commit: customized gateway for dREG

2017-02-03 Thread machristie
customized gateway for dREG Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/e1197002 Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/e1197002 Diff: http://git-wip-us.apache

airavata git commit: AIRAVATA-2305 Specifying user for non-privileged code deploy

2017-02-03 Thread machristie
Repository: airavata Updated Branches: refs/heads/develop 80dbaba6f -> eb2c38362 AIRAVATA-2305 Specifying user for non-privileged code deploy Project: http://git-wip-us.apache.org/repos/asf/airavata/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/eb2c3836 Tree: http://git-

airavata-php-gateway git commit: bug in json file for genome browser

2017-02-06 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/dreg-gateway e11970022 -> cbd43e133 bug in json file for genome browser Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/cbd43e13

airavata-php-gateway git commit: bug in track json

2017-02-06 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/dreg-gateway cbd43e133 -> b3ba3e3bc bug in track json Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/b3ba3e3b Tree: http://git-w

airavata-php-gateway git commit: encode/decode url links for genome browser

2017-02-07 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/dreg-gateway b3ba3e3bc -> ba4e57427 encode/decode url links for genome browser Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/ba

airavata-docs git commit: SELinux command to make user data dir writeable by httpd

2017-02-08 Thread machristie
Repository: airavata-docs Updated Branches: refs/heads/master 9db404b1a -> 91f7ce670 SELinux command to make user data dir writeable by httpd Project: http://git-wip-us.apache.org/repos/asf/airavata-docs/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-docs/commit/91f7ce67 Tree: h

airavata-docs git commit: Fixing code block inside list item

2017-02-08 Thread machristie
Repository: airavata-docs Updated Branches: refs/heads/master 91f7ce670 -> 7b4f1e4e9 Fixing code block inside list item Project: http://git-wip-us.apache.org/repos/asf/airavata-docs/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-docs/commit/7b4f1e4e Tree: http://git-wip-us.apach

[1/2] airavata-php-gateway git commit: AIRAVATA-2312 Removing unused method

2017-02-09 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/develop 6f55b5b18 -> 9765c1e25 AIRAVATA-2312 Removing unused method AdminController::updateUserRoles isn't routed to or referenced internally Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http:

[2/2] airavata-php-gateway git commit: AIRAVATA-2312 Adds 'initial-role-name' to pga_config.php

2017-02-09 Thread machristie
AIRAVATA-2312 Adds 'initial-role-name' to pga_config.php 'initial-role-name' defaults to 'user-pending' but can be customized to automatically assign new users to the given role. The main use case for this is to set 'initial-role-name' to 'gateway-user' to provide new users access to the gateway w

airavata-php-gateway git commit: adding partial download

2017-02-09 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/dreg-gateway ba4e57427 -> 003801168 adding partial download Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/00380116 Tree: http:/

airavata git commit: AIRAVATA-2322 Fail experiment when validation fails

2017-02-14 Thread machristie
Repository: airavata Updated Branches: refs/heads/develop 0926abf09 -> cfb0610fb AIRAVATA-2322 Fail experiment when validation fails Also add an experiment error messages with the validation error message, so that the user can see the validation error. Project: http://git-wip-us.apache.org/r

[03/12] airavata-php-gateway git commit: AIRAVATA-2266 : When tried to create tenant it asked to enter the auth key and the secret

2017-02-15 Thread machristie
AIRAVATA-2266 : When tried to create tenant it asked to enter the auth key and the secret Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/c4c63b78 Tree: http://git-wip-us.apache.org/repos/asf/ai

[11/12] airavata-php-gateway git commit: Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata-php-gateway into develop

2017-02-15 Thread machristie
Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata-php-gateway into develop Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/f199d9b8 Tree: http://git-wip-us.apache.org/re

[01/12] airavata-php-gateway git commit: fixing AIRAVATA-2265 : in SciGaP latest record should be on top of the list in Gateway requests.

2017-02-15 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/dreg-gateway 003801168 -> 75929d779 fixing AIRAVATA-2265 : in SciGaP latest record should be on top of the list in Gateway requests. Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip

[06/12] airavata-php-gateway git commit: AIRAVATA-2312 Adds 'initial-role-name' to pga_config.php

2017-02-15 Thread machristie
AIRAVATA-2312 Adds 'initial-role-name' to pga_config.php 'initial-role-name' defaults to 'user-pending' but can be customized to automatically assign new users to the given role. The main use case for this is to set 'initial-role-name' to 'gateway-user' to provide new users access to the gateway w

[07/12] airavata-php-gateway git commit: http HEAD

2017-02-15 Thread machristie
http HEAD Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/206e8d1f Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/206e8d1f Diff: http://git-wip-us.apache.org/repos/asf/air

[09/12] airavata-php-gateway git commit: modification for file download from genome browser

2017-02-15 Thread machristie
modification for file download from genome browser Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/d5533b06 Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/d5533b06 Diff:

[02/12] airavata-php-gateway git commit: fixing AIRAVATA-2267 : In view credential please show the domain.

2017-02-15 Thread machristie
fixing AIRAVATA-2267 : In view credential please show the domain. Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/4c47e540 Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/4

[05/12] airavata-php-gateway git commit: AIRAVATA-2312 Removing unused method

2017-02-15 Thread machristie
AIRAVATA-2312 Removing unused method AdminController::updateUserRoles isn't routed to or referenced internally Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/773e542c Tree: http://git-wip-us.ap

[08/12] airavata-php-gateway git commit: Merge HEAD route

2017-02-15 Thread machristie
Merge HEAD route Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/2c64ac00 Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/2c64ac00 Diff: http://git-wip-us.apache.org/repos/

[04/12] airavata-php-gateway git commit: fixing wrong parameter names in compute resource pref

2017-02-15 Thread machristie
fixing wrong parameter names in compute resource pref Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/6f55b5b1 Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/6f55b5b1 Diff

[12/12] airavata-php-gateway git commit: Merge remote-tracking branch 'origin/develop' into dreg-gateway

2017-02-15 Thread machristie
Merge remote-tracking branch 'origin/develop' into dreg-gateway Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/75929d77 Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/759

[10/12] airavata-php-gateway git commit: Making sidebar sticky.

2017-02-15 Thread machristie
Making sidebar sticky. Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/db5eba49 Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/db5eba49 Diff: http://git-wip-us.apache.org/

airavata-php-gateway git commit: AIRAVATA-2278 Remove Roles link from admin sidebar

2017-02-16 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/develop 70f85239e -> aba44b611 AIRAVATA-2278 Remove Roles link from admin sidebar Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit

[1/2] airavata-php-gateway git commit: Rbase64; remove queue name; download link

2017-02-20 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/dreg-gateway 75929d779 -> 8f3d7621e Rbase64; remove queue name; download link Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/d42

[2/2] airavata-php-gateway git commit: Merge branch 'dreg-gateway' of https://github.com/Danko-Lab/airavata-php-gateway into dreg-gateway

2017-02-20 Thread machristie
Merge branch 'dreg-gateway' of https://github.com/Danko-Lab/airavata-php-gateway into dreg-gateway Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/8f3d7621 Tree: http://git-wip-us.apache.org/rep

[3/3] airavata-php-gateway git commit: Merge branch 'dreg-gateway' of https://github.com/Danko-Lab/airavata-php-gateway into dreg-gateway

2017-02-22 Thread machristie
Merge branch 'dreg-gateway' of https://github.com/Danko-Lab/airavata-php-gateway into dreg-gateway Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/dc0c79c4 Tree: http://git-wip-us.apache.org/rep

[2/3] airavata-php-gateway git commit: Update on the document page

2017-02-22 Thread machristie
Update on the document page Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/135022fb Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/135022fb Diff: http://git-wip-us.apache

[1/3] airavata-php-gateway git commit: sync codes to remove user-pending status

2017-02-22 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/dreg-gateway 8f3d7621e -> dc0c79c41 sync codes to remove user-pending status Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/9549

[48/48] airavata git commit: Merge branch 'user-profile-service' of https://github.com/anujbhan/airavata into user-profile

2017-03-01 Thread machristie
Merge branch 'user-profile-service' of https://github.com/anujbhan/airavata into user-profile This closes #96 Project: http://git-wip-us.apache.org/repos/asf/airavata/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/d1ae2642 Tree: http://git-wip-us.apache.org/repos/asf/airava

[22/48] airavata git commit: AIRAVATA-2316 Updating Thrift generated stubs

2017-03-01 Thread machristie
http://git-wip-us.apache.org/repos/asf/airavata/blob/54e0f39e/airavata-api/airavata-client-sdks/airavata-php-sdk/src/main/resources/lib/Airavata/API/Airavata.php -- diff --git a/airavata-api/airavata-client-sdks/airavata-php-sdk/s

[36/48] airavata git commit: changing package name due to class loading problem

2017-03-01 Thread machristie
changing package name due to class loading problem Project: http://git-wip-us.apache.org/repos/asf/airavata/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/e0f63bcb Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/e0f63bcb Diff: http://git-wip-us.apache.org/repos/asf

[09/48] airavata git commit: Moving registry components for user-profile service to respective module

2017-03-01 Thread machristie
http://git-wip-us.apache.org/repos/asf/airavata/blob/05e97d6e/modules/user-profile/user-profile-core/pom.xml -- diff --git a/modules/user-profile/user-profile-core/pom.xml b/modules/user-profile/user-profile-core/pom.xml new file

[41/48] airavata git commit: AIRAVATA-2316 Updating Thrift generated stubs

2017-03-01 Thread machristie
AIRAVATA-2316 Updating Thrift generated stubs Project: http://git-wip-us.apache.org/repos/asf/airavata/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/9dd4fdb3 Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/9dd4fdb3 Diff: http://git-wip-us.apache.org/repos/asf/aira

[18/48] airavata git commit: AIRAVATA-2316 Configure forward mapping to generate foreign keys

2017-03-01 Thread machristie
AIRAVATA-2316 Configure forward mapping to generate foreign keys Project: http://git-wip-us.apache.org/repos/asf/airavata/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/6f498a40 Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/6f498a40 Diff: http://git-wip-us.apache

[33/48] airavata git commit: AIRAVATA-2316 Adding user profile properties

2017-03-01 Thread machristie
AIRAVATA-2316 Adding user profile properties Project: http://git-wip-us.apache.org/repos/asf/airavata/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/53193fb4 Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/53193fb4 Diff: http://git-wip-us.apache.org/repos/asf/airav

[06/48] airavata git commit: making corrections to user profile service code

2017-03-01 Thread machristie
making corrections to user profile service code Project: http://git-wip-us.apache.org/repos/asf/airavata/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/75527b42 Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/75527b42 Diff: http://git-wip-us.apache.org/repos/asf/ai

[03/48] airavata git commit: adding the server property file, which was left out in last commit

2017-03-01 Thread machristie
adding the server property file, which was left out in last commit Project: http://git-wip-us.apache.org/repos/asf/airavata/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/23448671 Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/23448671 Diff: http://git-wip-us.apac

[29/48] airavata git commit: AIRAVATA-2316 User Profile API methods added to xacml policy

2017-03-01 Thread machristie
AIRAVATA-2316 User Profile API methods added to xacml policy Project: http://git-wip-us.apache.org/repos/asf/airavata/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/bfe1066a Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/bfe1066a Diff: http://git-wip-us.apache.org

[39/48] airavata git commit: AIRAVATA-2316 Updating Thrift generated stubs

2017-03-01 Thread machristie
http://git-wip-us.apache.org/repos/asf/airavata/blob/9dd4fdb3/airavata-api/airavata-client-sdks/airavata-php-sdk/src/main/resources/lib/Airavata/API/Airavata.php -- diff --git a/airavata-api/airavata-client-sdks/airavata-php-sdk/s

[21/48] airavata git commit: AIRAVATA-2316 Adding API methods to thrift

2017-03-01 Thread machristie
AIRAVATA-2316 Adding API methods to thrift Project: http://git-wip-us.apache.org/repos/asf/airavata/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/4120d75f Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/4120d75f Diff: http://git-wip-us.apache.org/repos/asf/airavat

[26/48] airavata git commit: AIRAVATA-2316 Fixing loading user profile, eager fetch emails

2017-03-01 Thread machristie
AIRAVATA-2316 Fixing loading user profile, eager fetch emails Project: http://git-wip-us.apache.org/repos/asf/airavata/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/589392ef Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/589392ef Diff: http://git-wip-us.apache.or

[45/48] airavata git commit: AIRAVATA-2316 Eager fetch all UserProfile associations

2017-03-01 Thread machristie
AIRAVATA-2316 Eager fetch all UserProfile associations Project: http://git-wip-us.apache.org/repos/asf/airavata/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/08fd8c40 Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/08fd8c40 Diff: http://git-wip-us.apache.org/repos

[27/48] airavata git commit: AIRAVATA-2316 Eager fetch all UserProfile associations

2017-03-01 Thread machristie
AIRAVATA-2316 Eager fetch all UserProfile associations Project: http://git-wip-us.apache.org/repos/asf/airavata/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/0bc5f2e9 Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/0bc5f2e9 Diff: http://git-wip-us.apache.org/repos

[12/48] airavata git commit: renaming classes and including userProfileSerive exception

2017-03-01 Thread machristie
http://git-wip-us.apache.org/repos/asf/airavata/blob/8df74920/modules/user-profile/user-profile-stubs/src/main/java/org/apache/airavata/userprofile/crude/cpi/UserProfileCrudeService.java -- diff --git a/modules/user-profile/user-p

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