Updated Branches:
  refs/heads/cassandra-1.2 c5f4cdd2b -> 7746225dc
  refs/heads/trunk b59ca1fc8 -> 3a3f612f8


Always record row-level tombstones in index component
patch by jbellis; reviewed by jasobrown for CASSANDRA-5487


Project: http://git-wip-us.apache.org/repos/asf/cassandra/repo
Commit: http://git-wip-us.apache.org/repos/asf/cassandra/commit/798470e0
Tree: http://git-wip-us.apache.org/repos/asf/cassandra/tree/798470e0
Diff: http://git-wip-us.apache.org/repos/asf/cassandra/diff/798470e0

Branch: refs/heads/trunk
Commit: 798470e051af794b605cce28031b33b589cfc6d8
Parents: 813a937
Author: Jonathan Ellis <jbel...@apache.org>
Authored: Fri Apr 19 13:20:46 2013 -0500
Committer: Jonathan Ellis <jbel...@apache.org>
Committed: Fri Apr 19 13:20:46 2013 -0500

----------------------------------------------------------------------
 CHANGES.txt                                        |    1 +
 build.xml                                          |    2 +-
 src/java/org/apache/cassandra/db/ColumnIndex.java  |    5 +-
 .../org/apache/cassandra/db/RowIndexEntry.java     |   85 +++++-----
 .../db/columniterator/IndexedSliceReader.java      |   93 +++++-----
 .../db/columniterator/SSTableNamesIterator.java    |  130 +++++----------
 .../db/columniterator/SimpleSliceReader.java       |   15 +-
 .../apache/cassandra/io/sstable/Descriptor.java    |    7 +-
 .../apache/cassandra/io/sstable/SSTableReader.java |    2 +-
 .../cassandra/utils/AlwaysPresentFilter.java       |    4 +
 .../org/apache/cassandra/utils/FilterFactory.java  |    2 +-
 .../apache/cassandra/db/RangeTombstoneTest.java    |    4 -
 12 files changed, 158 insertions(+), 192 deletions(-)
----------------------------------------------------------------------


http://git-wip-us.apache.org/repos/asf/cassandra/blob/798470e0/CHANGES.txt
----------------------------------------------------------------------
diff --git a/CHANGES.txt b/CHANGES.txt
index 7fc93f4..7dbb62a 100644
--- a/CHANGES.txt
+++ b/CHANGES.txt
@@ -1,4 +1,5 @@
 1.2.5
+ * Fix promoted row-level tombstone writing (CASSANDRA-5486)
  * Include fatal errors in trace events (CASSANDRA-5447)
  * Ensure that PerRowSecondaryIndex is notified of row-level deletes
    (CASSANDRA-5445)

http://git-wip-us.apache.org/repos/asf/cassandra/blob/798470e0/build.xml
----------------------------------------------------------------------
diff --git a/build.xml b/build.xml
index 3491431..2ddd43d 100644
--- a/build.xml
+++ b/build.xml
@@ -519,7 +519,7 @@
       </artifact:pom>
     </target>
 
-    <target name="maven-ant-tasks-retrieve-build" 
depends="maven-declare-dependencies">
+    <target name="maven-ant-tasks-retrieve-build" 
depends="maven-declare-dependencies" unless="without.maven">
       <artifact:dependencies pomRefId="build-deps-pom"
                              filesetId="build-dependency-jars" 
                              sourcesFilesetId="build-dependency-sources" 

http://git-wip-us.apache.org/repos/asf/cassandra/blob/798470e0/src/java/org/apache/cassandra/db/ColumnIndex.java
----------------------------------------------------------------------
diff --git a/src/java/org/apache/cassandra/db/ColumnIndex.java 
b/src/java/org/apache/cassandra/db/ColumnIndex.java
index bcd0eef..e2ac3e4 100644
--- a/src/java/org/apache/cassandra/db/ColumnIndex.java
+++ b/src/java/org/apache/cassandra/db/ColumnIndex.java
@@ -33,7 +33,7 @@ public class ColumnIndex
     public final List<IndexHelper.IndexInfo> columnsIndex;
     public final IFilter bloomFilter;
 
-    private static final ColumnIndex EMPTY = new 
ColumnIndex(Collections.<IndexHelper.IndexInfo>emptyList(), new 
AlwaysPresentFilter());
+    private static final ColumnIndex EMPTY = new 
ColumnIndex(Collections.<IndexHelper.IndexInfo>emptyList(), 
AlwaysPresentFilter.instance);
 
     private ColumnIndex(int estimatedColumnCount)
     {
@@ -42,6 +42,9 @@ public class ColumnIndex
 
     private ColumnIndex(List<IndexHelper.IndexInfo> columnsIndex, IFilter 
bloomFilter)
     {
+        assert columnsIndex != null;
+        assert bloomFilter != null;
+
         this.columnsIndex = columnsIndex;
         this.bloomFilter = bloomFilter;
     }

http://git-wip-us.apache.org/repos/asf/cassandra/blob/798470e0/src/java/org/apache/cassandra/db/RowIndexEntry.java
----------------------------------------------------------------------
diff --git a/src/java/org/apache/cassandra/db/RowIndexEntry.java 
b/src/java/org/apache/cassandra/db/RowIndexEntry.java
index a831498..a60bf6d 100644
--- a/src/java/org/apache/cassandra/db/RowIndexEntry.java
+++ b/src/java/org/apache/cassandra/db/RowIndexEntry.java
@@ -28,6 +28,7 @@ import org.apache.cassandra.cache.IMeasurableMemory;
 import org.apache.cassandra.io.sstable.Descriptor;
 import org.apache.cassandra.io.sstable.IndexHelper;
 import org.apache.cassandra.io.util.FileUtils;
+import org.apache.cassandra.utils.AlwaysPresentFilter;
 import org.apache.cassandra.utils.IFilter;
 import org.apache.cassandra.utils.FilterFactory;
 import org.apache.cassandra.utils.ObjectSizes;
@@ -45,35 +46,42 @@ public class RowIndexEntry implements IMeasurableMemory
 
     public int serializedSize()
     {
-        return TypeSizes.NATIVE.sizeof(position);
+        return TypeSizes.NATIVE.sizeof(position) + promotedSize();
     }
 
-    public static RowIndexEntry create(long position, DeletionInfo 
deletionInfo, ColumnIndex index)
+    public int promotedSize()
     {
-        if (index != null && index.columnsIndex != null && 
index.columnsIndex.size() > 1)
-            return new IndexedEntry(position, deletionInfo, 
index.columnsIndex, index.bloomFilter);
-        else
-            return new RowIndexEntry(position);
+        return 0;
     }
 
-    public boolean isIndexed()
+    // TODO only store DeletionTime
+    public static RowIndexEntry create(long position, DeletionInfo 
deletionInfo, ColumnIndex index)
     {
-        return !columnsIndex().isEmpty();
+        assert deletionInfo != null;
+        assert index != null;
+
+        if (index.columnsIndex.size() > 1 || 
deletionInfo.getTopLevelDeletion() != DeletionTime.LIVE)
+            return new IndexedEntry(position,
+                                    deletionInfo,
+                                    index.columnsIndex.isEmpty() ? 
Collections.<IndexHelper.IndexInfo>emptyList() : index.columnsIndex,
+                                    index.columnsIndex.isEmpty() ? 
AlwaysPresentFilter.instance : index.bloomFilter);
+        else
+            return new RowIndexEntry(position);
     }
 
     public DeletionInfo deletionInfo()
     {
-        throw new UnsupportedOperationException();
+        return DeletionInfo.LIVE;
     }
 
     public List<IndexHelper.IndexInfo> columnsIndex()
     {
-        return Collections.<IndexHelper.IndexInfo>emptyList();
+        return Collections.emptyList();
     }
 
     public IFilter bloomFilter()
     {
-        throw new UnsupportedOperationException();
+        return AlwaysPresentFilter.instance;
     }
 
     public long memorySize()
@@ -87,14 +95,15 @@ public class RowIndexEntry implements IMeasurableMemory
         public void serialize(RowIndexEntry rie, DataOutput dos) throws 
IOException
         {
             dos.writeLong(rie.position);
-            if (rie.isIndexed())
+            if (!rie.columnsIndex().isEmpty() || 
rie.deletionInfo().getTopLevelDeletion() != DeletionTime.LIVE)
             {
-                dos.writeInt(((IndexedEntry)rie).serializedSize());
+                dos.writeInt(rie.promotedSize());
                 
DeletionInfo.serializer().serializeForSSTable(rie.deletionInfo(), dos);
                 dos.writeInt(rie.columnsIndex().size());
                 for (IndexHelper.IndexInfo info : rie.columnsIndex())
                     info.serialize(dos);
-                FilterFactory.serialize(rie.bloomFilter(), dos);
+                if (!rie.columnsIndex().isEmpty())
+                    FilterFactory.serialize(rie.bloomFilter(), dos);
             }
             else
             {
@@ -102,38 +111,24 @@ public class RowIndexEntry implements IMeasurableMemory
             }
         }
 
-        public RowIndexEntry deserializePositionOnly(DataInput dis, 
Descriptor.Version version) throws IOException
-        {
-            long position = dis.readLong();
-            if (version.hasPromotedIndexes)
-            {
-                int size = dis.readInt();
-                if (size > 0)
-                    FileUtils.skipBytesFully(dis, size);
-            }
-            return new RowIndexEntry(position);
-        }
-
         public RowIndexEntry deserialize(DataInput dis, Descriptor.Version 
version) throws IOException
         {
             long position = dis.readLong();
-            if (version.hasPromotedIndexes)
+            if (!version.hasPromotedIndexes)
+                return new RowIndexEntry(position);
+
+            int size = dis.readInt();
+            if (size > 0)
             {
-                int size = dis.readInt();
-                if (size > 0)
-                {
-                    DeletionInfo delInfo = 
DeletionInfo.serializer().deserializeFromSSTable(dis, version);
-                    int entries = dis.readInt();
-                    List<IndexHelper.IndexInfo> columnsIndex = new 
ArrayList<IndexHelper.IndexInfo>(entries);
-                    for (int i = 0; i < entries; i++)
-                        
columnsIndex.add(IndexHelper.IndexInfo.deserialize(dis));
-                    IFilter bf = FilterFactory.deserialize(dis, 
version.filterType, false);
-                    return new IndexedEntry(position, delInfo, columnsIndex, 
bf);
-                }
-                else
-                {
-                    return new RowIndexEntry(position);
-                }
+                DeletionInfo delInfo = 
DeletionInfo.serializer().deserializeFromSSTable(dis, version);
+                int entries = dis.readInt();
+                List<IndexHelper.IndexInfo> columnsIndex = new 
ArrayList<IndexHelper.IndexInfo>(entries);
+                for (int i = 0; i < entries; i++)
+                    columnsIndex.add(IndexHelper.IndexInfo.deserialize(dis));
+                IFilter bf = entries == 0
+                             ? AlwaysPresentFilter.instance
+                             : FilterFactory.deserialize(dis, 
version.filterType, false);
+                return new IndexedEntry(position, delInfo, columnsIndex, bf);
             }
             else
             {
@@ -171,7 +166,7 @@ public class RowIndexEntry implements IMeasurableMemory
         {
             super(position);
             assert deletionInfo != null;
-            assert columnsIndex != null && columnsIndex.size() > 1;
+            assert columnsIndex != null;
             this.deletionInfo = deletionInfo;
             this.columnsIndex = columnsIndex;
             this.bloomFilter = bloomFilter;
@@ -196,7 +191,7 @@ public class RowIndexEntry implements IMeasurableMemory
         }
 
         @Override
-        public int serializedSize()
+        public int promotedSize()
         {
             TypeSizes typeSizes = TypeSizes.NATIVE;
             long size = 
DeletionTime.serializer.serializedSize(deletionInfo.getTopLevelDeletion(), 
typeSizes);
@@ -204,7 +199,7 @@ public class RowIndexEntry implements IMeasurableMemory
             for (IndexHelper.IndexInfo info : columnsIndex)
                 size += info.serializedSize(typeSizes);
 
-            size += FilterFactory.serializedSize(bloomFilter);
+            size += bloomFilter instanceof AlwaysPresentFilter ? 0 : 
FilterFactory.serializedSize(bloomFilter);
             assert size <= Integer.MAX_VALUE;
             return (int)size;
         }

http://git-wip-us.apache.org/repos/asf/cassandra/blob/798470e0/src/java/org/apache/cassandra/db/columniterator/IndexedSliceReader.java
----------------------------------------------------------------------
diff --git 
a/src/java/org/apache/cassandra/db/columniterator/IndexedSliceReader.java 
b/src/java/org/apache/cassandra/db/columniterator/IndexedSliceReader.java
index 7289ab0..61ae00e 100644
--- a/src/java/org/apache/cassandra/db/columniterator/IndexedSliceReader.java
+++ b/src/java/org/apache/cassandra/db/columniterator/IndexedSliceReader.java
@@ -65,7 +65,7 @@ class IndexedSliceReader extends AbstractIterator<OnDiskAtom> 
implements OnDiskA
      * finish (reverse start) elements. i.e. forward: [a,b],[d,e],[g,h] 
reverse: [h,g],[e,d],[b,a]. This reader also
      * assumes that validation has been performed in terms of intervals (no 
overlapping intervals).
      */
-    public IndexedSliceReader(SSTableReader sstable, RowIndexEntry indexEntry, 
FileDataInput input, ColumnSlice[] slices, boolean reversed)
+    public IndexedSliceReader(SSTableReader sstable, RowIndexEntry rowEntry, 
FileDataInput input, ColumnSlice[] slices, boolean reversed)
     {
         this.sstable = sstable;
         this.originalInput = input;
@@ -76,34 +76,53 @@ class IndexedSliceReader extends 
AbstractIterator<OnDiskAtom> implements OnDiskA
         try
         {
             Descriptor.Version version = sstable.descriptor.version;
+            emptyColumnFamily = ColumnFamily.create(sstable.metadata);
+
+            if (version.hasPromotedRowTombstones && 
!rowEntry.columnsIndex().isEmpty())
+            {
+                // skip the row header entirely
+                indexes = rowEntry.columnsIndex();
+                emptyColumnFamily.delete(rowEntry.deletionInfo());
+                fetcher = new IndexedBlockFetcher(rowEntry.position);
+                return;
+            }
+
+            // skip up to bloom filter where things get a bit more interesting
+            if (input == null)
+            {
+                file = sstable.getFileDataInput(rowEntry.position);
+            }
+            else
+            {
+                file = input;
+                file.seek(rowEntry.position);
+            }
+            this.sstable.decodeKey(ByteBufferUtil.readWithShortLength(file));
+            SSTableReader.readRowSize(file, this.sstable.descriptor);
+
+            // read the row header up to and including the row-level tombstones
             if (version.hasPromotedIndexes)
             {
-                this.indexes = indexEntry.columnsIndex();
-                if (indexes.isEmpty())
-                {
-                    setToRowStart(sstable, indexEntry, input);
-                    this.emptyColumnFamily = 
ColumnFamily.create(sstable.metadata);
-                    
emptyColumnFamily.delete(DeletionInfo.serializer().deserializeFromSSTable(file, 
version));
-                    fetcher = new SimpleBlockFetcher();
-                }
-                else
-                {
-                    this.emptyColumnFamily = 
ColumnFamily.create(sstable.metadata);
-                    emptyColumnFamily.delete(indexEntry.deletionInfo());
-                    fetcher = new IndexedBlockFetcher(indexEntry.position);
-                }
+                indexes = rowEntry.columnsIndex();
+                emptyColumnFamily.delete(rowEntry.deletionInfo());
+            }
+            else
+            {
+                IndexHelper.skipSSTableBloomFilter(input, version);
+                indexes = IndexHelper.deserializeIndex(file);
+            }
+            
emptyColumnFamily.delete(DeletionInfo.serializer().deserializeFromSSTable(file, 
version));
+
+            if (indexes.isEmpty())
+            {
+                fetcher = new SimpleBlockFetcher();
             }
             else
             {
-                setToRowStart(sstable, indexEntry, input);
-                IndexHelper.skipSSTableBloomFilter(file, version);
-                this.indexes = IndexHelper.deserializeIndex(file);
-                this.emptyColumnFamily = ColumnFamily.create(sstable.metadata);
-                
emptyColumnFamily.delete(DeletionInfo.serializer().deserializeFromSSTable(file, 
version));
-                fetcher = indexes.isEmpty()
-                        ? new SimpleBlockFetcher()
-                        : new IndexedBlockFetcher(file.getFilePointer() + 4); 
// We still have the column count to
-                                                                              
// skip to get the basePosition
+                // index offsets changed to be based against the row key start 
in 1.2
+                fetcher = version.hasPromotedIndexes
+                        ? new IndexedBlockFetcher(rowEntry.position)
+                        : new IndexedBlockFetcher(file.getFilePointer() + 4); 
// +4 to skip the int column count
             }
         }
         catch (IOException e)
@@ -113,24 +132,6 @@ class IndexedSliceReader extends 
AbstractIterator<OnDiskAtom> implements OnDiskA
         }
     }
 
-    /**
-     * Sets the seek position to the start of the row for column scanning.
-     */
-    private void setToRowStart(SSTableReader reader, RowIndexEntry indexEntry, 
FileDataInput input) throws IOException
-    {
-        if (input == null)
-        {
-            this.file = sstable.getFileDataInput(indexEntry.position);
-        }
-        else
-        {
-            this.file = input;
-            input.seek(indexEntry.position);
-        }
-        sstable.decodeKey(ByteBufferUtil.readWithShortLength(file));
-        SSTableReader.readRowSize(file, sstable.descriptor);
-    }
-
     public ColumnFamily getColumnFamily()
     {
         return emptyColumnFamily;
@@ -197,8 +198,6 @@ class IndexedSliceReader extends 
AbstractIterator<OnDiskAtom> implements OnDiskA
             return reversed ? slices[currentSliceIdx].start : 
slices[currentSliceIdx].finish;
         }
 
-        protected abstract boolean setNextSlice();
-
         protected abstract boolean fetchMoreData();
 
         protected boolean isColumnBeforeSliceStart(OnDiskAtom column)
@@ -248,7 +247,7 @@ class IndexedSliceReader extends 
AbstractIterator<OnDiskAtom> implements OnDiskA
             setNextSlice();
         }
 
-        protected boolean setNextSlice()
+        private boolean setNextSlice()
         {
             while (++currentSliceIdx < slices.length)
             {
@@ -350,7 +349,7 @@ class IndexedSliceReader extends 
AbstractIterator<OnDiskAtom> implements OnDiskA
             /* seek to the correct offset to the data, and calculate the data 
size */
             long positionToSeek = basePosition + currentIndex.offset;
 
-            // With new promoted indexes, our first seek in the data file will 
happen at that point.
+            // With 1.2 promoted indexes, our first seek in the data file will 
happen at this point
             if (file == null)
                 file = originalInput == null ? 
sstable.getFileDataInput(positionToSeek) : originalInput;
 
@@ -464,7 +463,7 @@ class IndexedSliceReader extends 
AbstractIterator<OnDiskAtom> implements OnDiskA
             }
         }
 
-        protected boolean setNextSlice()
+        private boolean setNextSlice()
         {
             if (reversed)
             {

http://git-wip-us.apache.org/repos/asf/cassandra/blob/798470e0/src/java/org/apache/cassandra/db/columniterator/SSTableNamesIterator.java
----------------------------------------------------------------------
diff --git 
a/src/java/org/apache/cassandra/db/columniterator/SSTableNamesIterator.java 
b/src/java/org/apache/cassandra/db/columniterator/SSTableNamesIterator.java
index da4631d..326447f 100644
--- a/src/java/org/apache/cassandra/db/columniterator/SSTableNamesIterator.java
+++ b/src/java/org/apache/cassandra/db/columniterator/SSTableNamesIterator.java
@@ -19,25 +19,22 @@ package org.apache.cassandra.db.columniterator;
 
 import java.io.IOException;
 import java.nio.ByteBuffer;
-import java.util.*;
+import java.util.ArrayList;
+import java.util.Iterator;
+import java.util.List;
+import java.util.SortedSet;
 
 import org.apache.cassandra.config.CFMetaData;
-import org.apache.cassandra.db.ColumnFamily;
-import org.apache.cassandra.db.ColumnFamilySerializer;
-import org.apache.cassandra.db.DecoratedKey;
-import org.apache.cassandra.db.DeletionInfo;
-import org.apache.cassandra.db.IColumn;
-import org.apache.cassandra.db.RowIndexEntry;
-import org.apache.cassandra.db.OnDiskAtom;
+import org.apache.cassandra.db.*;
 import org.apache.cassandra.db.marshal.AbstractType;
 import org.apache.cassandra.io.sstable.CorruptSSTableException;
+import org.apache.cassandra.io.sstable.Descriptor;
 import org.apache.cassandra.io.sstable.IndexHelper;
 import org.apache.cassandra.io.sstable.SSTableReader;
 import org.apache.cassandra.io.util.FileDataInput;
 import org.apache.cassandra.io.util.FileMark;
 import org.apache.cassandra.io.util.FileUtils;
 import org.apache.cassandra.utils.ByteBufferUtil;
-import org.apache.cassandra.utils.IFilter;
 
 public class SSTableNamesIterator extends SimpleAbstractColumnIterator 
implements ISSTableColumnIterator
 {
@@ -55,13 +52,13 @@ public class SSTableNamesIterator extends 
SimpleAbstractColumnIterator implement
         this.columns = columns;
         this.key = key;
 
-        RowIndexEntry indexEntry = sstable.getPosition(key, 
SSTableReader.Operator.EQ);
-        if (indexEntry == null)
+        RowIndexEntry rowEntry = sstable.getPosition(key, 
SSTableReader.Operator.EQ);
+        if (rowEntry == null)
             return;
 
         try
         {
-            read(sstable, null, indexEntry);
+            read(sstable, null, rowEntry);
         }
         catch (IOException e)
         {
@@ -75,7 +72,7 @@ public class SSTableNamesIterator extends 
SimpleAbstractColumnIterator implement
         }
     }
 
-    public SSTableNamesIterator(SSTableReader sstable, FileDataInput file, 
DecoratedKey key, SortedSet<ByteBuffer> columns, RowIndexEntry indexEntry)
+    public SSTableNamesIterator(SSTableReader sstable, FileDataInput file, 
DecoratedKey key, SortedSet<ByteBuffer> columns, RowIndexEntry rowEntry)
     {
         assert columns != null;
         this.sstable = sstable;
@@ -84,7 +81,7 @@ public class SSTableNamesIterator extends 
SimpleAbstractColumnIterator implement
 
         try
         {
-            read(sstable, file, indexEntry);
+            read(sstable, file, rowEntry);
         }
         catch (IOException e)
         {
@@ -104,101 +101,66 @@ public class SSTableNamesIterator extends 
SimpleAbstractColumnIterator implement
         return sstable;
     }
 
-    private void read(SSTableReader sstable, FileDataInput file, RowIndexEntry 
indexEntry)
-    throws IOException
+    private void read(SSTableReader sstable, FileDataInput file, RowIndexEntry 
rowEntry)
+            throws IOException
     {
-        IFilter bf;
         List<IndexHelper.IndexInfo> indexList;
 
-        // If the entry is not indexed or the index is not promoted, read from 
the row start
-        if (!indexEntry.isIndexed())
+        Descriptor.Version version = sstable.descriptor.version;
+        cf = ColumnFamily.create(sstable.metadata);
+        List<OnDiskAtom> result = new ArrayList<OnDiskAtom>(columns.size());
+
+        if (version.hasPromotedRowTombstones && 
!rowEntry.columnsIndex().isEmpty())
         {
-            if (file == null)
-                file = createFileDataInput(indexEntry.position);
-            else
-                file.seek(indexEntry.position);
+            // skip the row header entirely
+            cf.delete(rowEntry.deletionInfo());
 
-            DecoratedKey keyInDisk = 
SSTableReader.decodeKey(sstable.partitioner,
-                                                             
sstable.descriptor,
-                                                             
ByteBufferUtil.readWithShortLength(file));
-            assert keyInDisk.equals(key) : String.format("%s != %s in %s", 
keyInDisk, key, file.getPath());
-            SSTableReader.readRowSize(file, sstable.descriptor);
+            readIndexedColumns(sstable.metadata, file, columns, 
rowEntry.columnsIndex(), rowEntry.position, result);
+            iter = result.iterator();
+            return;
         }
 
-        if (sstable.descriptor.version.hasPromotedIndexes)
-        {
-            bf = indexEntry.isIndexed() ? indexEntry.bloomFilter() : null;
-            indexList = indexEntry.columnsIndex();
-        }
+        if (file == null)
+            file = createFileDataInput(rowEntry.position);
         else
-        {
-            assert file != null;
-            bf = IndexHelper.defreezeBloomFilter(file, 
sstable.descriptor.version.filterType);
-            indexList = IndexHelper.deserializeIndex(file);
-        }
+            file.seek(rowEntry.position);
+
+        DecoratedKey keyInDisk = SSTableReader.decodeKey(sstable.partitioner,
+                                                         sstable.descriptor,
+                                                         
ByteBufferUtil.readWithShortLength(file));
+        assert keyInDisk.equals(key) : String.format("%s != %s in %s", 
keyInDisk, key, file.getPath());
+        SSTableReader.readRowSize(file, sstable.descriptor);
 
-        if (!indexEntry.isIndexed())
+        if (sstable.descriptor.version.hasPromotedIndexes)
         {
-            // we can stop early if bloom filter says none of the columns 
actually exist -- but,
-            // we can't stop before initializing the cf above, in case there's 
a relevant tombstone
-            ColumnFamilySerializer serializer = ColumnFamily.serializer;
-            try
-            {
-                cf = ColumnFamily.create(sstable.metadata);
-                
cf.delete(DeletionInfo.serializer().deserializeFromSSTable(file, 
sstable.descriptor.version));
-            }
-            catch (Exception e)
-            {
-                throw new IOException(serializer + " failed to deserialize " + 
sstable.getColumnFamilyName() + " with " + sstable.metadata + " from " + file, 
e);
-            }
+            indexList = rowEntry.columnsIndex();
+            cf.delete(rowEntry.deletionInfo());
         }
         else
         {
-            cf = ColumnFamily.create(sstable.metadata);
-            cf.delete(indexEntry.deletionInfo());
+            indexList = IndexHelper.deserializeIndex(file);
         }
 
-        List<OnDiskAtom> result = new ArrayList<OnDiskAtom>();
-        List<ByteBuffer> filteredColumnNames = new 
ArrayList<ByteBuffer>(columns.size());
-        for (ByteBuffer name : columns)
-        {
-            if (bf == null || bf.isPresent(name))
-            {
-                filteredColumnNames.add(name);
-            }
-        }
-        if (filteredColumnNames.isEmpty())
-            return;
+        cf.delete(DeletionInfo.serializer().deserializeFromSSTable(file, 
sstable.descriptor.version));
 
         if (indexList.isEmpty())
         {
-            readSimpleColumns(file, columns, filteredColumnNames, result);
+            readSimpleColumns(file, columns, result);
         }
         else
         {
-            long basePosition;
-            if (sstable.descriptor.version.hasPromotedIndexes)
-            {
-                basePosition = indexEntry.position;
-            }
-            else
-            {
-                assert file != null;
-                file.readInt(); // column count
-                basePosition = file.getFilePointer();
-            }
-            readIndexedColumns(sstable.metadata, file, columns, 
filteredColumnNames, indexList, basePosition, result);
+            long basePosition = version.hasPromotedIndexes ? rowEntry.position 
: file.getFilePointer() + 4;
+            readIndexedColumns(sstable.metadata, file, columns, indexList, 
basePosition, result);
         }
 
         // create an iterator view of the columns we read
         iter = result.iterator();
     }
 
-    private void readSimpleColumns(FileDataInput file, SortedSet<ByteBuffer> 
columnNames, List<ByteBuffer> filteredColumnNames, List<OnDiskAtom> result) 
throws IOException
+    private void readSimpleColumns(FileDataInput file, SortedSet<ByteBuffer> 
columnNames, List<OnDiskAtom> result) throws IOException
     {
         OnDiskAtom.Serializer atomSerializer = cf.getOnDiskSerializer();
         int columns = file.readInt();
-        int n = 0;
         for (int i = 0; i < columns; i++)
         {
             OnDiskAtom column = atomSerializer.deserializeFromSSTable(file, 
sstable.descriptor.version);
@@ -207,7 +169,7 @@ public class SSTableNamesIterator extends 
SimpleAbstractColumnIterator implement
                 if (columnNames.contains(column.name()))
                 {
                     result.add(column);
-                    if (n++ > filteredColumnNames.size())
+                    if (result.size() >= columnNames.size())
                         break;
                 }
             }
@@ -221,17 +183,16 @@ public class SSTableNamesIterator extends 
SimpleAbstractColumnIterator implement
     private void readIndexedColumns(CFMetaData metadata,
                                     FileDataInput file,
                                     SortedSet<ByteBuffer> columnNames,
-                                    List<ByteBuffer> filteredColumnNames,
                                     List<IndexHelper.IndexInfo> indexList,
                                     long basePosition,
                                     List<OnDiskAtom> result)
-    throws IOException
+            throws IOException
     {
         /* get the various column ranges we have to read */
         AbstractType<?> comparator = metadata.comparator;
         List<IndexHelper.IndexInfo> ranges = new 
ArrayList<IndexHelper.IndexInfo>();
         int lastIndexIdx = -1;
-        for (ByteBuffer name : filteredColumnNames)
+        for (ByteBuffer name : columnNames)
         {
             int index = IndexHelper.indexFor(name, indexList, comparator, 
false, lastIndexIdx);
             if (index < 0 || index == indexList.size())
@@ -251,7 +212,7 @@ public class SSTableNamesIterator extends 
SimpleAbstractColumnIterator implement
         {
             long positionToSeek = basePosition + indexInfo.offset;
 
-            // With new promoted indexes, our first seek in the data file will 
happen at that point.
+            // With 1.2 promoted indexes, our first seek in the data file will 
happen at this point
             if (file == null)
                 file = createFileDataInput(positionToSeek);
 
@@ -262,7 +223,6 @@ public class SSTableNamesIterator extends 
SimpleAbstractColumnIterator implement
             while (file.bytesPastMark(mark) < indexInfo.width)
             {
                 OnDiskAtom column = 
atomSerializer.deserializeFromSSTable(file, sstable.descriptor.version);
-                // we check vs the original Set, not the filtered List, for 
efficiency
                 if (!(column instanceof IColumn) || 
columnNames.contains(column.name()))
                     result.add(column);
             }

http://git-wip-us.apache.org/repos/asf/cassandra/blob/798470e0/src/java/org/apache/cassandra/db/columniterator/SimpleSliceReader.java
----------------------------------------------------------------------
diff --git 
a/src/java/org/apache/cassandra/db/columniterator/SimpleSliceReader.java 
b/src/java/org/apache/cassandra/db/columniterator/SimpleSliceReader.java
index b30d360..0cf9af6 100644
--- a/src/java/org/apache/cassandra/db/columniterator/SimpleSliceReader.java
+++ b/src/java/org/apache/cassandra/db/columniterator/SimpleSliceReader.java
@@ -49,7 +49,7 @@ class SimpleSliceReader extends AbstractIterator<OnDiskAtom> 
implements OnDiskAt
     private FileMark mark;
     private final OnDiskAtom.Serializer atomSerializer;
 
-    public SimpleSliceReader(SSTableReader sstable, RowIndexEntry indexEntry, 
FileDataInput input, ByteBuffer finishColumn)
+    public SimpleSliceReader(SSTableReader sstable, RowIndexEntry rowEntry, 
FileDataInput input, ByteBuffer finishColumn)
     {
         this.sstable = sstable;
         this.finishColumn = finishColumn;
@@ -58,13 +58,13 @@ class SimpleSliceReader extends 
AbstractIterator<OnDiskAtom> implements OnDiskAt
         {
             if (input == null)
             {
-                this.file = sstable.getFileDataInput(indexEntry.position);
+                this.file = sstable.getFileDataInput(rowEntry.position);
                 this.needsClosing = true;
             }
             else
             {
                 this.file = input;
-                input.seek(indexEntry.position);
+                input.seek(rowEntry.position);
                 this.needsClosing = false;
             }
 
@@ -72,14 +72,19 @@ class SimpleSliceReader extends 
AbstractIterator<OnDiskAtom> implements OnDiskAt
             ByteBufferUtil.skipShortLength(file);
             SSTableReader.readRowSize(file, sstable.descriptor);
 
+            emptyColumnFamily = ColumnFamily.create(sstable.metadata);
+
             Descriptor.Version version = sstable.descriptor.version;
-            if (!version.hasPromotedIndexes)
+            if (version.hasPromotedIndexes)
+            {
+                emptyColumnFamily.delete(rowEntry.deletionInfo());
+            }
+            else
             {
                 IndexHelper.skipSSTableBloomFilter(file, version);
                 IndexHelper.skipIndex(file);
             }
 
-            emptyColumnFamily = ColumnFamily.create(sstable.metadata);
             
emptyColumnFamily.delete(DeletionInfo.serializer().deserializeFromSSTable(file, 
version));
             atomSerializer = emptyColumnFamily.getOnDiskSerializer();
             columns = file.readInt();

http://git-wip-us.apache.org/repos/asf/cassandra/blob/798470e0/src/java/org/apache/cassandra/io/sstable/Descriptor.java
----------------------------------------------------------------------
diff --git a/src/java/org/apache/cassandra/io/sstable/Descriptor.java 
b/src/java/org/apache/cassandra/io/sstable/Descriptor.java
index f21a0d5..7b916cb 100644
--- a/src/java/org/apache/cassandra/io/sstable/Descriptor.java
+++ b/src/java/org/apache/cassandra/io/sstable/Descriptor.java
@@ -47,7 +47,7 @@ public class Descriptor
     public static class Version
     {
         // This needs to be at the begining for initialization sake
-        public static final String current_version = "ib";
+        public static final String current_version = "ic";
 
         public static final Version LEGACY = new Version("a"); // "pre-history"
         // b (0.7.0): added version to sstable filenames
@@ -62,10 +62,11 @@ public class Descriptor
         // hd (1.0.10): includes row tombstones in maxtimestamp
         // he (1.1.3): includes ancestors generation in metadata component
         // hf (1.1.6): marker that replay position corresponds to 1.1.5+ 
millis-based id (see CASSANDRA-4782)
-        // ia (1.2.0): column indexes are promoted to the index file
+        // ia (1.2.0): column indexes are promoted to the index file.  (this 
means index offsets are now against the start of the row key, rather than the 
start of columns data, since the former allows us to skip the row header)
         //             records estimated histogram of deletion times in 
tombstones
         //             bloom filter (keys and columns) upgraded to Murmur3
         // ib (1.2.1): tracks min client timestamp in metadata component
+        // ic (1.2.6): always promotes row-level tombstones into index file; 
previously this was unreliable
 
         public static final Version CURRENT = new Version(current_version);
 
@@ -83,6 +84,7 @@ public class Descriptor
         public final boolean hasPartitioner;
         public final boolean tracksTombstones;
         public final boolean hasPromotedIndexes;
+        public final boolean hasPromotedRowTombstones;
         public final FilterFactory.Type filterType;
         public final boolean hasAncestors;
         public final boolean hasBloomFilterSizeInHeader;
@@ -102,6 +104,7 @@ public class Descriptor
             metadataIncludesModernReplayPosition = version.compareTo("hf") >= 
0;
             tracksTombstones = version.compareTo("ia") >= 0;
             hasPromotedIndexes = version.compareTo("ia") >= 0;
+            hasPromotedRowTombstones = version.compareTo("ic") >= 0;
             isLatestVersion = version.compareTo(current_version) == 0;
             if (version.compareTo("f") < 0)
                 filterType = FilterFactory.Type.SHA;

http://git-wip-us.apache.org/repos/asf/cassandra/blob/798470e0/src/java/org/apache/cassandra/io/sstable/SSTableReader.java
----------------------------------------------------------------------
diff --git a/src/java/org/apache/cassandra/io/sstable/SSTableReader.java 
b/src/java/org/apache/cassandra/io/sstable/SSTableReader.java
index 21a8673..61f505d 100644
--- a/src/java/org/apache/cassandra/io/sstable/SSTableReader.java
+++ b/src/java/org/apache/cassandra/io/sstable/SSTableReader.java
@@ -323,7 +323,7 @@ public class SSTableReader extends SSTable
     {
         if (!components.contains(Component.FILTER))
         {
-            bf = new AlwaysPresentFilter();
+            bf = AlwaysPresentFilter.instance;
             return;
         }
 

http://git-wip-us.apache.org/repos/asf/cassandra/blob/798470e0/src/java/org/apache/cassandra/utils/AlwaysPresentFilter.java
----------------------------------------------------------------------
diff --git a/src/java/org/apache/cassandra/utils/AlwaysPresentFilter.java 
b/src/java/org/apache/cassandra/utils/AlwaysPresentFilter.java
index 67ac111..39b3d5d 100644
--- a/src/java/org/apache/cassandra/utils/AlwaysPresentFilter.java
+++ b/src/java/org/apache/cassandra/utils/AlwaysPresentFilter.java
@@ -26,6 +26,10 @@ import java.nio.ByteBuffer;
 
 public class AlwaysPresentFilter implements IFilter
 {
+    public static final AlwaysPresentFilter instance = new 
AlwaysPresentFilter();
+
+    private AlwaysPresentFilter() { }
+
     public boolean isPresent(ByteBuffer key)
     {
         return true;

http://git-wip-us.apache.org/repos/asf/cassandra/blob/798470e0/src/java/org/apache/cassandra/utils/FilterFactory.java
----------------------------------------------------------------------
diff --git a/src/java/org/apache/cassandra/utils/FilterFactory.java 
b/src/java/org/apache/cassandra/utils/FilterFactory.java
index 88c8973..1b9027d 100644
--- a/src/java/org/apache/cassandra/utils/FilterFactory.java
+++ b/src/java/org/apache/cassandra/utils/FilterFactory.java
@@ -131,7 +131,7 @@ public class FilterFactory
     {
         assert maxFalsePosProbability <= 1.0 : "Invalid probability";
         if (maxFalsePosProbability == 1.0)
-            return new AlwaysPresentFilter();
+            return AlwaysPresentFilter.instance;
         int bucketsPerElement = 
BloomCalculations.maxBucketsPerElement(numElements);
         BloomCalculations.BloomSpecification spec = 
BloomCalculations.computeBloomSpec(bucketsPerElement, maxFalsePosProbability);
         return createFilter(spec.K, numElements, spec.bucketsPerElement, type, 
offheap);

http://git-wip-us.apache.org/repos/asf/cassandra/blob/798470e0/test/unit/org/apache/cassandra/db/RangeTombstoneTest.java
----------------------------------------------------------------------
diff --git a/test/unit/org/apache/cassandra/db/RangeTombstoneTest.java 
b/test/unit/org/apache/cassandra/db/RangeTombstoneTest.java
index 1bc846b..c531461 100644
--- a/test/unit/org/apache/cassandra/db/RangeTombstoneTest.java
+++ b/test/unit/org/apache/cassandra/db/RangeTombstoneTest.java
@@ -164,10 +164,6 @@ public class RangeTombstoneTest extends SchemaLoader
         return ByteBufferUtil.bytes(i);
     }
 
-    private static void insertData(ColumnFamilyStore cfs, String key) throws 
Exception
-    {
-    }
-
     private static void add(RowMutation rm, int value, long timestamp)
     {
         rm.add(new QueryPath(CFNAME, null, b(value)), b(value), timestamp);

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