GORA-525: Add Java Doc

Project: http://git-wip-us.apache.org/repos/asf/gora/repo
Commit: http://git-wip-us.apache.org/repos/asf/gora/commit/7a0174fa
Tree: http://git-wip-us.apache.org/repos/asf/gora/tree/7a0174fa
Diff: http://git-wip-us.apache.org/repos/asf/gora/diff/7a0174fa

Branch: refs/heads/master
Commit: 7a0174fa338294b3ff20859ad3b776b7f0e2970b
Parents: 742df58
Author: Lewis John McGibbney <lewis.mcgibb...@gmail.com>
Authored: Tue Sep 5 09:10:26 2017 -0700
Committer: Lewis John McGibbney <lewis.mcgibb...@gmail.com>
Committed: Tue Sep 5 09:10:26 2017 -0700

----------------------------------------------------------------------
 .../org/apache/gora/avro/store/AvroStore.java   | 33 +++++-----
 .../java/org/apache/gora/filter/Filter.java     |  7 +--
 .../java/org/apache/gora/filter/FilterList.java |  3 -
 .../apache/gora/filter/MapFieldValueFilter.java |  3 -
 .../gora/filter/SingleFieldValueFilter.java     |  3 -
 .../apache/gora/mapreduce/GoraInputFormat.java  | 12 ++--
 .../org/apache/gora/mapreduce/GoraMapper.java   | 50 ++++++++--------
 .../apache/gora/mapreduce/GoraOutputFormat.java |  8 +--
 .../org/apache/gora/mapreduce/GoraReducer.java  | 24 ++++----
 .../gora/mapreduce/PersistentSerializer.java    |  4 +-
 .../apache/gora/persistency/BeanFactory.java    |  8 +--
 .../gora/persistency/impl/BeanFactoryImpl.java  | 10 ++--
 .../persistency/ws/impl/BeanFactoryWSImpl.java  |  9 ++-
 .../persistency/ws/impl/PersistentWSBase.java   | 33 +++++-----
 .../org/apache/gora/spark/GoraSparkEngine.java  | 14 ++---
 .../java/org/apache/gora/store/DataStore.java   |  8 +--
 .../apache/gora/store/impl/DataStoreBase.java   | 24 ++++----
 .../store/impl/FileBackedDataStoreBase.java     | 63 ++++++++++----------
 18 files changed, 148 insertions(+), 168 deletions(-)
----------------------------------------------------------------------


http://git-wip-us.apache.org/repos/asf/gora/blob/7a0174fa/gora-core/src/main/java/org/apache/gora/avro/store/AvroStore.java
----------------------------------------------------------------------
diff --git a/gora-core/src/main/java/org/apache/gora/avro/store/AvroStore.java 
b/gora-core/src/main/java/org/apache/gora/avro/store/AvroStore.java
index 1eb1efe..f1f79c9 100644
--- a/gora-core/src/main/java/org/apache/gora/avro/store/AvroStore.java
+++ b/gora-core/src/main/java/org/apache/gora/avro/store/AvroStore.java
@@ -49,15 +49,14 @@ import org.slf4j.LoggerFactory;
 /**
  * An adapter DataStore for binary-compatible Avro serializations.
  * AvroDataStore supports Binary and JSON serializations.
- * @param <T>
  */
 public class AvroStore<K, T extends PersistentBase>
-  extends FileBackedDataStoreBase<K, T> implements Configurable {
+extends FileBackedDataStoreBase<K, T> implements Configurable {
 
   /** The property key specifying avro encoder/decoder type to use. Can take 
values
    * "BINARY" or "JSON". */
   public static final String CODEC_TYPE_KEY = "codec.type";
-  
+
   public static final Logger LOG = LoggerFactory.getLogger(AvroStore.class);
 
   /**
@@ -79,16 +78,14 @@ public class AvroStore<K, T extends PersistentBase>
 
   @Override
   public void initialize(Class<K> keyClass, Class<T> persistentClass,
-      Properties properties) {
-      super.initialize(keyClass, persistentClass, properties);
-  
-      if(properties != null) {
-        if(this.codecType == null) {
-          String codecType = DataStoreFactory.findProperty(
+          Properties properties) {
+    super.initialize(keyClass, persistentClass, properties);
+
+    if(properties != null && this.codecType == null) {
+      String codecType = DataStoreFactory.findProperty(
               properties, this, CODEC_TYPE_KEY, "BINARY");
-          this.codecType = CodecType.valueOf(codecType);
-        }
-      }
+      this.codecType = CodecType.valueOf(codecType);
+    }
   }
 
   public void setCodecType(CodecType codecType) {
@@ -142,7 +139,7 @@ public class AvroStore<K, T extends PersistentBase>
   @Override
   protected Result<K,T> executeQuery(Query<K,T> query) throws IOException {
     return new AvroResult<>(this, (AvroQuery<K,T>)query,
-        getDatumReader(), getDecoder());
+            getDatumReader(), getDecoder());
   }
 
   /**
@@ -150,7 +147,7 @@ public class AvroStore<K, T extends PersistentBase>
    */
   @Override
   protected Result<K,T> executePartial(FileSplitPartitionQuery<K,T> query)
-  throws IOException {
+          throws IOException {
     throw new OperationNotSupportedException("Not yet implemented");
   }
 
@@ -215,9 +212,9 @@ public class AvroStore<K, T extends PersistentBase>
   protected Encoder createEncoder() throws IOException {
     switch(codecType) {
       case BINARY:
-        return EncoderFactory.get().binaryEncoder(getOrCreateOutputStream(), 
null);
+      return EncoderFactory.get().binaryEncoder(getOrCreateOutputStream(), 
null);
       case JSON:
-        return EncoderFactory.get().jsonEncoder(schema, 
getOrCreateOutputStream());
+      return EncoderFactory.get().jsonEncoder(schema, 
getOrCreateOutputStream());
     }
     return null;
   }
@@ -225,9 +222,9 @@ public class AvroStore<K, T extends PersistentBase>
   protected Decoder createDecoder() throws IOException {
     switch(codecType) {
       case BINARY:
-        return DecoderFactory.get().binaryDecoder(getOrCreateInputStream(), 
null);
+      return DecoderFactory.get().binaryDecoder(getOrCreateInputStream(), 
null);
       case JSON:
-        return DecoderFactory.get().jsonDecoder(schema, 
getOrCreateInputStream());
+      return DecoderFactory.get().jsonDecoder(schema, 
getOrCreateInputStream());
     }
     return null;
   }

http://git-wip-us.apache.org/repos/asf/gora/blob/7a0174fa/gora-core/src/main/java/org/apache/gora/filter/Filter.java
----------------------------------------------------------------------
diff --git a/gora-core/src/main/java/org/apache/gora/filter/Filter.java 
b/gora-core/src/main/java/org/apache/gora/filter/Filter.java
index badaa61..53dd674 100644
--- a/gora-core/src/main/java/org/apache/gora/filter/Filter.java
+++ b/gora-core/src/main/java/org/apache/gora/filter/Filter.java
@@ -24,17 +24,14 @@ import org.apache.hadoop.io.Writable;
  * Defines filtering (possibly including modification) of rows. By default
  * all filtering is done client side. (In generic Gora classes). Datastore
  * implementations can decide if they install remote filters, when possible.
- *
- * @param <K>
- * @param <T>
  */
 public interface Filter<K, T extends Persistent> extends Writable{
 
   /**
    * Filter the key and persistent. Modification is possible.
    *
-   * @param key
-   * @param persistent
+   * @param key the key to use in the filter
+   * @param persistent the {@link Persistent} object to filter on
    * @return <code>true</code> if the row is filtered out (excluded),
    * <code>false</code> otherwise.
    */

http://git-wip-us.apache.org/repos/asf/gora/blob/7a0174fa/gora-core/src/main/java/org/apache/gora/filter/FilterList.java
----------------------------------------------------------------------
diff --git a/gora-core/src/main/java/org/apache/gora/filter/FilterList.java 
b/gora-core/src/main/java/org/apache/gora/filter/FilterList.java
index 63ef656..1416a22 100644
--- a/gora-core/src/main/java/org/apache/gora/filter/FilterList.java
+++ b/gora-core/src/main/java/org/apache/gora/filter/FilterList.java
@@ -32,9 +32,6 @@ import java.util.List;
  * {@link FilterList} enables us to utilize conditional operands
  * for advanced filtering within the construction and
  * execution of Gora queries.
- *
- * @param <K>
- * @param <T>
  */
 public class FilterList<K, T extends PersistentBase> implements Filter<K, T> {
   /** set operator */

http://git-wip-us.apache.org/repos/asf/gora/blob/7a0174fa/gora-core/src/main/java/org/apache/gora/filter/MapFieldValueFilter.java
----------------------------------------------------------------------
diff --git 
a/gora-core/src/main/java/org/apache/gora/filter/MapFieldValueFilter.java 
b/gora-core/src/main/java/org/apache/gora/filter/MapFieldValueFilter.java
index 610d9d7..1775e7e 100644
--- a/gora-core/src/main/java/org/apache/gora/filter/MapFieldValueFilter.java
+++ b/gora-core/src/main/java/org/apache/gora/filter/MapFieldValueFilter.java
@@ -33,9 +33,6 @@ import java.util.Map;
 
 /**
  * A filter that checks for a single field in the persistent.
- *
- * @param <K>
- * @param <T>
  */
 public class MapFieldValueFilter<K, T extends PersistentBase> implements 
Filter<K, T> {
 

http://git-wip-us.apache.org/repos/asf/gora/blob/7a0174fa/gora-core/src/main/java/org/apache/gora/filter/SingleFieldValueFilter.java
----------------------------------------------------------------------
diff --git 
a/gora-core/src/main/java/org/apache/gora/filter/SingleFieldValueFilter.java 
b/gora-core/src/main/java/org/apache/gora/filter/SingleFieldValueFilter.java
index 9846c59..a96d667 100644
--- a/gora-core/src/main/java/org/apache/gora/filter/SingleFieldValueFilter.java
+++ b/gora-core/src/main/java/org/apache/gora/filter/SingleFieldValueFilter.java
@@ -32,9 +32,6 @@ import java.util.List;
 
 /**
  * A filter that checks for a single field in the persistent.
- * 
- * @param <K>
- * @param <T>
  */
 public class SingleFieldValueFilter<K, T extends PersistentBase> implements 
Filter<K, T>{
 

http://git-wip-us.apache.org/repos/asf/gora/blob/7a0174fa/gora-core/src/main/java/org/apache/gora/mapreduce/GoraInputFormat.java
----------------------------------------------------------------------
diff --git 
a/gora-core/src/main/java/org/apache/gora/mapreduce/GoraInputFormat.java 
b/gora-core/src/main/java/org/apache/gora/mapreduce/GoraInputFormat.java
index a082da9..637200e 100644
--- a/gora-core/src/main/java/org/apache/gora/mapreduce/GoraInputFormat.java
+++ b/gora-core/src/main/java/org/apache/gora/mapreduce/GoraInputFormat.java
@@ -131,9 +131,9 @@ public class GoraInputFormat<K, T extends PersistentBase>
    * @param job          the job to set the properties for
    * @param query        the query to get the inputs from
    * @param reuseObjects whether to reuse objects in serialization
-   * @param <K1>
-   * @param <V1>
-   * @throws IOException
+   * @param <K1> key class for {@link org.apache.gora.query.Query}
+   * @param <V1> object value key class for {@link org.apache.gora.query.Query}
+   * @throws IOException if there is an error configuring the input parameters 
for the job
    */
   public static <K1, V1 extends Persistent> void setInput(Job job
       , Query<K1,V1> query, boolean reuseObjects)
@@ -155,9 +155,9 @@ public class GoraInputFormat<K, T extends PersistentBase>
    * @param inKeyClass     Map input key class
    * @param inValueClass   Map input value class
    * @param reuseObjects   whether to reuse objects in serialization
-   * @param <K1>
-   * @param <V1>
-   * @throws IOException
+   * @param <K1> key class for {@link org.apache.gora.query.Query}
+   * @param <V1> object value key class for {@link org.apache.gora.query.Query}
+   * @throws IOException if there is an error configuring the input parameters 
for the job
    */
   public static <K1, V1 extends Persistent> void setInput(
       Job job, 

http://git-wip-us.apache.org/repos/asf/gora/blob/7a0174fa/gora-core/src/main/java/org/apache/gora/mapreduce/GoraMapper.java
----------------------------------------------------------------------
diff --git a/gora-core/src/main/java/org/apache/gora/mapreduce/GoraMapper.java 
b/gora-core/src/main/java/org/apache/gora/mapreduce/GoraMapper.java
index 1a49c69..7583fe4 100644
--- a/gora-core/src/main/java/org/apache/gora/mapreduce/GoraMapper.java
+++ b/gora-core/src/main/java/org/apache/gora/mapreduce/GoraMapper.java
@@ -46,11 +46,11 @@ public class GoraMapper<K1, V1 extends Persistent, K2, V2> 
extends Mapper<K1, V1
    * @param mapperClass      the mapper class extending GoraMapper
    * @param partitionerClass optional partitioner class
    * @param reuseObjects     whether to reuse objects in serialization
-   * @param <K1>
-   * @param <V1>
-   * @param <K2>
-   * @param <V2>
-   * @throws IOException
+   * @param <K1> Map input key class
+   * @param <V1> Map input value class
+   * @param <K2> Map output key class
+   * @param <V2> Map output value class
+   * @throws IOException if there is an error initializing the Map job
    */
   @SuppressWarnings("rawtypes")
   public static <K1, V1 extends Persistent, K2, V2> void initMapperJob(
@@ -90,11 +90,11 @@ public class GoraMapper<K1, V1 extends Persistent, K2, V2> 
extends Mapper<K1, V1
    * @param outValueClass  Map output value class
    * @param mapperClass    the mapper class extending GoraMapper
    * @param reuseObjects   whether to reuse objects in serialization
-   * @param <K1>
-   * @param <V1>
-   * @param <K2>
-   * @param <V2>
-   * @throws IOException
+   * @param <K1> Map input key class
+   * @param <V1> Map input value class
+   * @param <K2> Map output key class
+   * @param <V2> Map output value class
+   * @throws IOException if there is an error initializing the Map job
    */
   @SuppressWarnings("rawtypes")
   public static <K1, V1 extends Persistent, K2, V2> void initMapperJob(
@@ -120,11 +120,11 @@ public class GoraMapper<K1, V1 extends Persistent, K2, 
V2> extends Mapper<K1, V1
    * @param mapperClass      the mapper class extending GoraMapper
    * @param partitionerClass optional partitioner class
    * @param reuseObjects     whether to reuse objects in serialization
-   * @param <K1>
-   * @param <V1>
-   * @param <K2>
-   * @param <V2>
-   * @throws IOException
+   * @param <K1> Map input key class
+   * @param <V1> Map input value class
+   * @param <K2> Map output key class
+   * @param <V2> Map output value class
+   * @throws IOException if there is an error initializing the Map job
    */
   @SuppressWarnings("rawtypes")
   public static <K1, V1 extends Persistent, K2, V2> void initMapperJob(
@@ -156,11 +156,11 @@ public class GoraMapper<K1, V1 extends Persistent, K2, 
V2> extends Mapper<K1, V1
    * @param outValueClass Map output value class
    * @param mapperClass   the mapper class extending GoraMapper
    * @param reuseObjects  whether to reuse objects in serialization
-   * @param <K1>
-   * @param <V1>
-   * @param <K2>
-   * @param <V2>
-   * @throws IOException
+   * @param <K1> Map input key class
+   * @param <V1> Map input value class
+   * @param <K2> Map output key class
+   * @param <V2> Map output value class
+   * @throws IOException if there is an error initializing the Map job
    */
   @SuppressWarnings({ "rawtypes" })
   public static <K1, V1 extends Persistent, K2, V2> void initMapperJob(
@@ -183,11 +183,11 @@ public class GoraMapper<K1, V1 extends Persistent, K2, 
V2> extends Mapper<K1, V1
    * @param outValueClass Map output value class
    * @param mapperClass   the mapper class extending GoraMapper
    * @param reuseObjects  whether to reuse objects in serialization
-   * @param <K1>
-   * @param <V1>
-   * @param <K2>
-   * @param <V2>
-   * @throws IOException
+   * @param <K1> Map input key class
+   * @param <V1> Map input value class
+   * @param <K2> Map output key class
+   * @param <V2> Map output value class
+   * @throws IOException if there is an error initializing the Map job
    */
   @SuppressWarnings({ "rawtypes" })
   public static <K1, V1 extends Persistent, K2, V2> void initMapperJob(

http://git-wip-us.apache.org/repos/asf/gora/blob/7a0174fa/gora-core/src/main/java/org/apache/gora/mapreduce/GoraOutputFormat.java
----------------------------------------------------------------------
diff --git 
a/gora-core/src/main/java/org/apache/gora/mapreduce/GoraOutputFormat.java 
b/gora-core/src/main/java/org/apache/gora/mapreduce/GoraOutputFormat.java
index e4792e3..9b67de8 100644
--- a/gora-core/src/main/java/org/apache/gora/mapreduce/GoraOutputFormat.java
+++ b/gora-core/src/main/java/org/apache/gora/mapreduce/GoraOutputFormat.java
@@ -99,8 +99,8 @@ public class GoraOutputFormat<K, T extends Persistent>
    * @param job          the job to set the properties for
    * @param dataStore    the datastore as the output
    * @param reuseObjects whether to reuse objects in serialization
-   * @param <K>
-   * @param <V>
+   * @param <K> key class for the {@link org.apache.gora.store.DataStore}
+   * @param <V> value class for the {@link org.apache.gora.store.DataStore}
    */
   public static <K, V extends Persistent> void setOutput(Job job,
       DataStore<K,V> dataStore, boolean reuseObjects) {
@@ -116,8 +116,8 @@ public class GoraOutputFormat<K, T extends Persistent>
    * @param keyClass        output key class
    * @param persistentClass output value class
    * @param reuseObjects    whether to reuse objects in serialization
-   * @param <K>
-   * @param <V>
+   * @param <K> key class for the {@link org.apache.gora.store.DataStore}
+   * @param <V> value class for the {@link org.apache.gora.store.DataStore}
    */
   @SuppressWarnings("rawtypes")
   public static <K, V extends Persistent> void setOutput(Job job,

http://git-wip-us.apache.org/repos/asf/gora/blob/7a0174fa/gora-core/src/main/java/org/apache/gora/mapreduce/GoraReducer.java
----------------------------------------------------------------------
diff --git a/gora-core/src/main/java/org/apache/gora/mapreduce/GoraReducer.java 
b/gora-core/src/main/java/org/apache/gora/mapreduce/GoraReducer.java
index 627f799..2d71fd7 100644
--- a/gora-core/src/main/java/org/apache/gora/mapreduce/GoraReducer.java
+++ b/gora-core/src/main/java/org/apache/gora/mapreduce/GoraReducer.java
@@ -37,10 +37,10 @@ public class GoraReducer<K1, V1, K2, V2 extends Persistent>
    * @param persistentClass output value class
    * @param reducerClass    the reducer class extending GoraReducer
    * @param reuseObjects    whether to reuse objects in serialization
-   * @param <K1>
-   * @param <V1>
-   * @param <K2>
-   * @param <V2>
+   * @param <K1> Reduce input key class
+   * @param <V1> Reduce input value class
+   * @param <K2> Reduce output key class
+   * @param <V2> Reduce output value class
    */
   public static <K1, V1, K2, V2 extends Persistent>
   void initReducerJob(
@@ -62,10 +62,10 @@ public class GoraReducer<K1, V1, K2, V2 extends Persistent>
    * @param job          the job to set the properties for
    * @param dataStore    the datastore as the output
    * @param reducerClass the reducer class extending GoraReducer* @param 
reducerClass
-   * @param <K1>
-   * @param <V1>
-   * @param <K2>
-   * @param <V2>
+   * @param <K1> Reduce input key class
+   * @param <V1> Reduce input value class
+   * @param <K2> Reduce output key class
+   * @param <V2> Reduce output value class
    */
   public static <K1, V1, K2, V2 extends Persistent>
   void initReducerJob(
@@ -83,10 +83,10 @@ public class GoraReducer<K1, V1, K2, V2 extends Persistent>
    * @param dataStore    the datastore as the output
    * @param reducerClass the reducer class extending GoraReducer
    * @param reuseObjects whether to reuse objects in serialization
-   * @param <K1>
-   * @param <V1>
-   * @param <K2>
-   * @param <V2>
+   * @param <K1> Reduce input key class
+   * @param <V1> Reduce input value class
+   * @param <K2> Reduce output key class
+   * @param <V2> Reduce output value class
    */
   public static <K1, V1, K2, V2 extends Persistent>
   void initReducerJob(

http://git-wip-us.apache.org/repos/asf/gora/blob/7a0174fa/gora-core/src/main/java/org/apache/gora/mapreduce/PersistentSerializer.java
----------------------------------------------------------------------
diff --git 
a/gora-core/src/main/java/org/apache/gora/mapreduce/PersistentSerializer.java 
b/gora-core/src/main/java/org/apache/gora/mapreduce/PersistentSerializer.java
index 1851ff5..c266b8b 100644
--- 
a/gora-core/src/main/java/org/apache/gora/mapreduce/PersistentSerializer.java
+++ 
b/gora-core/src/main/java/org/apache/gora/mapreduce/PersistentSerializer.java
@@ -57,8 +57,8 @@ public class PersistentSerializer implements 
Serializer<PersistentBase> {
   /**
    * Do the serialization of the {@link PersistentBase} object
    *
-   * @param persistent
-   * @throws IOException
+   * @param persistent {@link PersistentBase} object to serialize
+   * @throws IOException if there is an error during serialization
    */
   @Override
   public void serialize(PersistentBase persistent) throws IOException {

http://git-wip-us.apache.org/repos/asf/gora/blob/7a0174fa/gora-core/src/main/java/org/apache/gora/persistency/BeanFactory.java
----------------------------------------------------------------------
diff --git 
a/gora-core/src/main/java/org/apache/gora/persistency/BeanFactory.java 
b/gora-core/src/main/java/org/apache/gora/persistency/BeanFactory.java
index a2dff8c..eb0ba28 100644
--- a/gora-core/src/main/java/org/apache/gora/persistency/BeanFactory.java
+++ b/gora-core/src/main/java/org/apache/gora/persistency/BeanFactory.java
@@ -21,16 +21,16 @@ package org.apache.gora.persistency;
 /**
  * BeanFactory's enable contruction of keys and Persistent objects.
  *
- * @param <K>
- * @param <T>
+ * @param <K> a key
+ * @param <T> a {@link Persistent} object
  */
-public interface BeanFactory<K, T>{
+public interface BeanFactory<K, T> {
 
   /**
    * Constructs a new instance of the key class
    *
    * @return a new instance of the key class
-   * @throws Exception
+   * @throws Exception if unabe to create the key class
    */
   K newKey() throws Exception;
 

http://git-wip-us.apache.org/repos/asf/gora/blob/7a0174fa/gora-core/src/main/java/org/apache/gora/persistency/impl/BeanFactoryImpl.java
----------------------------------------------------------------------
diff --git 
a/gora-core/src/main/java/org/apache/gora/persistency/impl/BeanFactoryImpl.java 
b/gora-core/src/main/java/org/apache/gora/persistency/impl/BeanFactoryImpl.java
index 445f58e..763cba1 100644
--- 
a/gora-core/src/main/java/org/apache/gora/persistency/impl/BeanFactoryImpl.java
+++ 
b/gora-core/src/main/java/org/apache/gora/persistency/impl/BeanFactoryImpl.java
@@ -26,10 +26,10 @@ import org.apache.gora.util.ReflectionUtils;
 
 /**
  * A default implementation of the {@link BeanFactory} interface. Constructs
- * the keys using by reflection, {@link Persistent} objects by calling
+ * the keys by using reflection, {@link Persistent} objects by calling
  *
- * @param <K>
- * @param <T>
+ * @param <K> a key
+ * @param <T> a {@link Persistent} object
  */
 public class BeanFactoryImpl<K, T extends Persistent> implements 
BeanFactory<K, T> {
 
@@ -54,8 +54,8 @@ public class BeanFactoryImpl<K, T extends Persistent> 
implements BeanFactory<K,
   /**
    * Default constructor for this class.
    *
-   * @param keyClass
-   * @param persistentClass
+   * @param keyClass class of the keys
+   * @param persistentClass class of the [{@link Persistent} objects to be 
stored
    */
   public BeanFactoryImpl(Class<K> keyClass, Class<T> persistentClass) {
     this.keyClass = keyClass;

http://git-wip-us.apache.org/repos/asf/gora/blob/7a0174fa/gora-core/src/main/java/org/apache/gora/persistency/ws/impl/BeanFactoryWSImpl.java
----------------------------------------------------------------------
diff --git 
a/gora-core/src/main/java/org/apache/gora/persistency/ws/impl/BeanFactoryWSImpl.java
 
b/gora-core/src/main/java/org/apache/gora/persistency/ws/impl/BeanFactoryWSImpl.java
index c106829..bd8b676 100644
--- 
a/gora-core/src/main/java/org/apache/gora/persistency/ws/impl/BeanFactoryWSImpl.java
+++ 
b/gora-core/src/main/java/org/apache/gora/persistency/ws/impl/BeanFactoryWSImpl.java
@@ -31,8 +31,8 @@ import org.slf4j.LoggerFactory;
  * A default implementation of the {@link BeanFactory} interface. Constructs 
  * the keys using by reflection, {@link Persistent} objects by calling
  *
- * @param <K>
- * @param <T>
+ * @param <K> a key
+ * @param <T> a {@link Persistent} object
  */
 public class BeanFactoryWSImpl<K, T extends Persistent> implements 
BeanFactory<K, T> {
 
@@ -71,8 +71,8 @@ public class BeanFactoryWSImpl<K, T extends Persistent> 
implements BeanFactory<K
   /**
    * Constructor
    *
-   * @param keyClass
-   * @param persistentClass
+   * @param keyClass class of the key to be used
+   * @param persistentClass class of the {@link Persistent} objects to be 
stored
    */
   public BeanFactoryWSImpl(Class<K> keyClass, Class<T> persistentClass) {
     this.keyClass = keyClass;
@@ -92,7 +92,6 @@ public class BeanFactoryWSImpl<K, T extends Persistent> 
implements BeanFactory<K
   }
   
   @Override
-  @SuppressWarnings("unchecked")
   /**
    * Creates a new key
    */

http://git-wip-us.apache.org/repos/asf/gora/blob/7a0174fa/gora-core/src/main/java/org/apache/gora/persistency/ws/impl/PersistentWSBase.java
----------------------------------------------------------------------
diff --git 
a/gora-core/src/main/java/org/apache/gora/persistency/ws/impl/PersistentWSBase.java
 
b/gora-core/src/main/java/org/apache/gora/persistency/ws/impl/PersistentWSBase.java
index 3c15e23..68c4b8b 100644
--- 
a/gora-core/src/main/java/org/apache/gora/persistency/ws/impl/PersistentWSBase.java
+++ 
b/gora-core/src/main/java/org/apache/gora/persistency/ws/impl/PersistentWSBase.java
@@ -34,14 +34,14 @@ public abstract class PersistentWSBase implements 
Persistent  {
    * Maps keys to their own classes
    */
   protected static Map<Class<?>, Map<String, Integer>> FIELD_MAP =
-    new HashMap<>();
+          new HashMap<>();
 
   /**
    * Maps fields to their own classes
    */
   protected static Map<Class<?>, String[]> FIELDS =
-    new HashMap<>();
-    
+          new HashMap<>();
+
 
   /** Subclasses should call this function for all the persistable fields
    * in the class to register them.
@@ -61,6 +61,7 @@ public abstract class PersistentWSBase implements Persistent  
{
 
   /**
    * Gets fields using a specific class
+   * @return a {@link java.util.Map} of fields to their own classes
    */
   public String[] getFields() {
     return FIELDS.get(getClass());
@@ -68,6 +69,7 @@ public abstract class PersistentWSBase implements Persistent  
{
 
   /**
    * Gets a specific field from the fields map
+   * @return a specific {@link java.lang.String} field
    */
   public String getField(int index) {
     return FIELDS.get(getClass())[index];
@@ -75,6 +77,7 @@ public abstract class PersistentWSBase implements Persistent  
{
 
   /**
    * Gets a field index based on the field name
+   * @return a specific {@link java.lang.String} field
    */
   public int getFieldIndex(String field) {
     return FIELD_MAP.get(getClass()).get(field);
@@ -91,11 +94,10 @@ public abstract class PersistentWSBase implements 
Persistent  {
   }
 
   private void clearReadable() {
-         // TODO Auto-generated method stub
-         
+
   }
 
-       @Override
+  @Override
   /**
    * Determines if an object has been modified or not
    */
@@ -132,7 +134,6 @@ public abstract class PersistentWSBase implements 
Persistent  {
   }
 
   @Override
-  // TODO
   public int hashCode() {
     int result = 1;
     return result;
@@ -144,18 +145,18 @@ public abstract class PersistentWSBase implements 
Persistent  {
     int h = 1;
     int p = buf.arrayOffset();
     for (int j = buf.limit() - 1; j >= p; j--)
-          h = 31 * h + buf.get(j);
+      h = 31 * h + buf.get(j);
     return h;
   }
-  
+
   @Override
   /**
    * Clones a persistent object
    */
   public Persistent clone() {
-         return null;
+    return null;
   }
-  
+
   @Override
   /**
    * Converts an object to string
@@ -171,12 +172,12 @@ public abstract class PersistentWSBase implements 
Persistent  {
 
   /**
    * Checks if a field is equal between two objects
-   * @param index
-   * @param value
-   * @return
+   * @param index index position of the field to compare
+   * @param value object to compare against
+   * @return true if this field if equal otherwise false
    */
   protected boolean isFieldEqual(int index, Object value) {
-    // TODO
-         return true;
+    //TODO not implemented
+    return true;
   }
 }

http://git-wip-us.apache.org/repos/asf/gora/blob/7a0174fa/gora-core/src/main/java/org/apache/gora/spark/GoraSparkEngine.java
----------------------------------------------------------------------
diff --git a/gora-core/src/main/java/org/apache/gora/spark/GoraSparkEngine.java 
b/gora-core/src/main/java/org/apache/gora/spark/GoraSparkEngine.java
index 48490b0..b1916b6 100644
--- a/gora-core/src/main/java/org/apache/gora/spark/GoraSparkEngine.java
+++ b/gora-core/src/main/java/org/apache/gora/spark/GoraSparkEngine.java
@@ -100,10 +100,8 @@ public class GoraSparkEngine<K, V extends Persistent> {
    * Creates a job and sets the output parameters for the conf that Spark will 
use
    *
    * @param dataStore the datastore as the output
-   * @param <K>
-   * @param <V>
-   * @return
-   * @throws IOException
+   * @return a populated output {@link org.apache.hadoop.conf.Configuration} 
+   * @throws IOException if there is an error creating the configuration
    */
     public <K, V extends Persistent> Configuration 
generateOutputConf(DataStore<K, V> dataStore)
        throws IOException {
@@ -121,9 +119,7 @@ public class GoraSparkEngine<K, V extends Persistent> {
    *
    * @param job the job to set the properties for
    * @param dataStore the datastore as the output
-   * @param <K>
-   * @param <V>
-   * @return
+   * @return a populated output {@link org.apache.hadoop.conf.Configuration} 
    */
     public <K, V extends Persistent> Configuration generateOutputConf(Job job,
         DataStore<K, V> dataStore) {
@@ -138,9 +134,7 @@ public class GoraSparkEngine<K, V extends Persistent> {
    * @param dataStoreClass  the datastore class
    * @param keyClass        output key class
    * @param persistentClass output value class
-   * @param <K>
-   * @param <V>
-   * @return
+   * @return a populated output {@link org.apache.hadoop.conf.Configuration} 
    */
     @SuppressWarnings("rawtypes")
     public <K, V extends Persistent> Configuration generateOutputConf(Job job,

http://git-wip-us.apache.org/repos/asf/gora/blob/7a0174fa/gora-core/src/main/java/org/apache/gora/store/DataStore.java
----------------------------------------------------------------------
diff --git a/gora-core/src/main/java/org/apache/gora/store/DataStore.java 
b/gora-core/src/main/java/org/apache/gora/store/DataStore.java
index ace39b8..55c71b9 100644
--- a/gora-core/src/main/java/org/apache/gora/store/DataStore.java
+++ b/gora-core/src/main/java/org/apache/gora/store/DataStore.java
@@ -147,8 +147,8 @@ public interface DataStore<K, T extends Persistent> {
    * be replaced. See also the note on 
    * <a href="#visibility">visibility</a>.
    *
-   * @param key
-   * @param obj
+   * @param key the key of the object
+   * @param obj the {@link Persistent} object
    */
   void put(K key, T obj);
 
@@ -187,9 +187,9 @@ public interface DataStore<K, T extends Persistent> {
    * is null, then the data store returns the partitions for the default query
    * (returning every object)
    *
-   * @param query
+   * @param query the {@link Query} to partition
    * @return a List of PartitionQuery's
-   * @throws IOException 
+   * @throws IOException if there is an error generating partitions
    */
   List<PartitionQuery<K, T>> getPartitions(Query<K, T> query) throws 
IOException;
 

http://git-wip-us.apache.org/repos/asf/gora/blob/7a0174fa/gora-core/src/main/java/org/apache/gora/store/impl/DataStoreBase.java
----------------------------------------------------------------------
diff --git 
a/gora-core/src/main/java/org/apache/gora/store/impl/DataStoreBase.java 
b/gora-core/src/main/java/org/apache/gora/store/impl/DataStoreBase.java
index 4fe339d..6b21a67 100644
--- a/gora-core/src/main/java/org/apache/gora/store/impl/DataStoreBase.java
+++ b/gora-core/src/main/java/org/apache/gora/store/impl/DataStoreBase.java
@@ -53,9 +53,9 @@ import org.slf4j.LoggerFactory;
 /**
  * A Base class for Avro persistent {@link DataStore}s.
  */
-public abstract class DataStoreBase<K, T extends PersistentBase>
+public abstract class DataStoreBase<K, T extends PersistentBase> 
     implements DataStore<K, T>, Configurable, Writable, Closeable {
-       
+
   protected BeanFactory<K, T> beanFactory;
 
   protected Class<K> keyClass;
@@ -76,7 +76,7 @@ public abstract class DataStoreBase<K, T extends 
PersistentBase>
   protected SpecificDatumReader<T> datumReader;
 
   protected SpecificDatumWriter<T> datumWriter;
-  
+
   public static final Logger LOG = LoggerFactory.getLogger(AvroStore.class);
 
   public DataStoreBase() {
@@ -84,7 +84,7 @@ public abstract class DataStoreBase<K, T extends 
PersistentBase>
 
   @Override
   public void initialize(Class<K> keyClass, Class<T> persistentClass,
-      Properties properties) {
+          Properties properties) {
     setKeyClass(keyClass);
     setPersistentClass(persistentClass);
     if (this.beanFactory == null) {
@@ -157,11 +157,11 @@ public abstract class DataStoreBase<K, T extends 
PersistentBase>
   }
 
   /**
-   * Checks whether the fields argument is null, and if so
-   * returns all the fields of the Persistent object, else returns the
+   * Check whether the fields argument is null, if it is not,
+   * return all the fields of the Persistent object, else return the
    * argument.
    *
-   * @param fields
+   * @param fields a string array of fields to query against
    * @return String array
    */
   protected String[] getFieldsToQuery(String[] fields) {
@@ -170,10 +170,10 @@ public abstract class DataStoreBase<K, T extends 
PersistentBase>
     }
     return getFields();
   }
-  
+
   protected String[] getFields() {
     List<Field> schemaFields = 
beanFactory.getCachedPersistent().getSchema().getFields();
-    
+
     List<Field> list = new ArrayList<>();
     for (Field field : schemaFields) {
       if (!Persistent.DIRTY_BYTES_FIELD_NAME.equalsIgnoreCase(field.name())) {
@@ -181,12 +181,12 @@ public abstract class DataStoreBase<K, T extends 
PersistentBase>
       }
     }
     schemaFields = list;
-    
+
     String[] fieldNames = new String[schemaFields.size()];
     for(int i = 0; i<fieldNames.length; i++ ){
       fieldNames[i] = schemaFields.get(i).name();
     }
-    
+
     return fieldNames;
   }
 
@@ -266,7 +266,7 @@ public abstract class DataStoreBase<K, T extends 
PersistentBase>
     if (confSchemaName != null) {
       return confSchemaName;
     }
-    
+
     String schemaName = DataStoreFactory.getDefaultSchemaName(properties, 
this);
     if(schemaName != null) {
       return schemaName;

http://git-wip-us.apache.org/repos/asf/gora/blob/7a0174fa/gora-core/src/main/java/org/apache/gora/store/impl/FileBackedDataStoreBase.java
----------------------------------------------------------------------
diff --git 
a/gora-core/src/main/java/org/apache/gora/store/impl/FileBackedDataStoreBase.java
 
b/gora-core/src/main/java/org/apache/gora/store/impl/FileBackedDataStoreBase.java
index 23ce9fa..817a28f 100644
--- 
a/gora-core/src/main/java/org/apache/gora/store/impl/FileBackedDataStoreBase.java
+++ 
b/gora-core/src/main/java/org/apache/gora/store/impl/FileBackedDataStoreBase.java
@@ -50,7 +50,7 @@ import org.slf4j.LoggerFactory;
  * Base implementations for {@link FileBackedDataStore} methods.
  */
 public abstract class FileBackedDataStoreBase<K, T extends PersistentBase>
-  extends DataStoreBase<K, T> implements FileBackedDataStore<K, T> {
+extends DataStoreBase<K, T> implements FileBackedDataStore<K, T> {
 
   protected long inputSize; //input size in bytes
 
@@ -59,12 +59,12 @@ public abstract class FileBackedDataStoreBase<K, T extends 
PersistentBase>
 
   protected InputStream inputStream;
   protected OutputStream outputStream;
-  
+
   public static final Logger LOG = LoggerFactory.getLogger(AvroStore.class);
 
   @Override
   public void initialize(Class<K> keyClass, Class<T> persistentClass,
-      Properties properties) {
+          Properties properties) {
     super.initialize(keyClass, persistentClass, properties);
     if(properties != null) {
       if(this.inputPath == null) {
@@ -77,37 +77,37 @@ public abstract class FileBackedDataStoreBase<K, T extends 
PersistentBase>
   }
 
   @Override
-public void setInputPath(String inputPath) {
+  public void setInputPath(String inputPath) {
     this.inputPath = inputPath;
   }
 
   @Override
-public void setOutputPath(String outputPath) {
+  public void setOutputPath(String outputPath) {
     this.outputPath = outputPath;
   }
 
   @Override
-public String getInputPath() {
+  public String getInputPath() {
     return inputPath;
   }
 
   @Override
-public String getOutputPath() {
+  public String getOutputPath() {
     return outputPath;
   }
 
   @Override
-public void setInputStream(InputStream inputStream) {
+  public void setInputStream(InputStream inputStream) {
     this.inputStream = inputStream;
   }
 
   @Override
-public void setOutputStream(OutputStream outputStream) {
+  public void setOutputStream(OutputStream outputStream) {
     this.outputStream = outputStream;
   }
 
   @Override
-public InputStream getInputStream() {
+  public InputStream getInputStream() {
     return inputStream;
   }
 
@@ -116,10 +116,11 @@ public InputStream getInputStream() {
     return outputStream;
   }
 
-  /** Opens an InputStream for the input Hadoop path
-   *
-   * @return
-   * @throws IOException
+  /** 
+   * Opens an InputStream for the input Hadoop path
+   * @return an open {@link java.io.InputStream}
+   * @throws IOException if there is an error obtaining the FileSystem or/from 
+   * the path
    */
   protected InputStream createInputStream() throws IOException {
     //TODO: if input path is a directory, use smt like MultiInputStream to
@@ -130,9 +131,9 @@ public InputStream getInputStream() {
     return fs.open(path);
   }
 
-  /** Opens an OutputStream for the output Hadoop path
-   *
-   * @return
+  /** 
+   * Opens an OutputStream for the output Hadoop path
+   * @return an open {@link java.io.OutputStream}
    */
   protected OutputStream createOutputStream() {
     OutputStream conf = null;
@@ -171,7 +172,7 @@ public InputStream getInputStream() {
     try{
       splits = GoraMapReduceUtils.getSplits(getConf(), inputPath);
       queries = new ArrayList<>(splits.size());
-  
+
       for(InputSplit split : splits) {
         queries.add(new FileSplitPartitionQuery<>(query, (FileSplit) split));
       }
@@ -200,22 +201,22 @@ public InputStream getInputStream() {
    * Executes a normal Query reading the whole data. #execute() calls this 
function
    * for non-PartitionQuery's.
    *
-   * @param query
-   * @return
-   * @throws IOException
+   * @param query the {@link org.apache.gora.query.Query} to execute
+   * @return a {@link org.apache.gora.query.Result}
+   * @throws IOException if there is an error during query exeuction
    */
   protected abstract Result<K,T> executeQuery(Query<K,T> query)
-    throws IOException;
+          throws IOException;
 
   /**
    * Executes a PartitialQuery, reading the data between start and end.
    *
-   * @param query
-   * @return
-   * @throws IOException
+   * @param query the {@link 
org.apache.gora.query.impl.FileSplitPartitionQuery} to execute
+   * @return a {@link org.apache.gora.query.Result}
+   * @throws IOException if there is an error during query exeuction
    */
   protected abstract Result<K,T> executePartial(FileSplitPartitionQuery<K,T> 
query)
-    throws IOException;
+          throws IOException;
 
   @Override
   public void flush() {
@@ -234,7 +235,7 @@ public InputStream getInputStream() {
   @Override
   public void deleteSchema() {
     throw new OperationNotSupportedException("delete schema is not supported 
for " +
-               "file backed data stores");
+            "file backed data stores");
   }
 
   @Override
@@ -272,9 +273,9 @@ public InputStream getInputStream() {
 
   @Override
   public void close() {
-      IOUtils.closeStream(inputStream);
-      IOUtils.closeStream(outputStream);
-      inputStream = null;
-      outputStream = null;
+    IOUtils.closeStream(inputStream);
+    IOUtils.closeStream(outputStream);
+    inputStream = null;
+    outputStream = null;
   }
 }

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