[12/14] airavata git commit: adding user profile client, which was accidently deleted in last commit

2017-02-02 Thread machristie
adding user profile client, which was accidently deleted in last commit Project: http://git-wip-us.apache.org/repos/asf/airavata/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/7aa0e2fb Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/7aa0e2fb Diff:

[10/14] airavata git commit: renaming classes and including userProfileSerive exception

2017-02-02 Thread machristie
http://git-wip-us.apache.org/repos/asf/airavata/blob/39e22204/modules/user-profile/user-profile-stubs/src/main/java/org/apache/airavata/userprofile/cpi/UserProfileService.java -- diff --git

[04/14] airavata git commit: adding the server property file, which was left out in last commit

2017-02-02 Thread machristie
adding the server property file, which was left out in last commit Project: http://git-wip-us.apache.org/repos/asf/airavata/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/aa98eee4 Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/aa98eee4 Diff:

[11/14] airavata git commit: renaming classes and including userProfileSerive exception

2017-02-02 Thread machristie
renaming classes and including userProfileSerive exception Project: http://git-wip-us.apache.org/repos/asf/airavata/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/39e22204 Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/39e22204 Diff:

[03/14] airavata git commit: making corrections to user profile service code

2017-02-02 Thread machristie
making corrections to user profile service code Project: http://git-wip-us.apache.org/repos/asf/airavata/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/8f6f2183 Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/8f6f2183 Diff:

[08/14] airavata git commit: renaming classes and including userProfileSerive exception

2017-02-02 Thread machristie
http://git-wip-us.apache.org/repos/asf/airavata/blob/39e22204/modules/user-profile/user-profile-stubs/src/main/java/org/apache/airavata/userprofile/crude/cpi/UserProfileCrudeService.java -- diff --git

[07/14] airavata git commit: renaming classes and including userProfileSerive exception

2017-02-02 Thread machristie
http://git-wip-us.apache.org/repos/asf/airavata/blob/39e22204/modules/user-profile/user-profile-stubs/src/main/java/org/apache/airavata/userprofile/crude/cpi/client/UserProfileServiceClientFactory.java -- diff --git

[09/14] airavata git commit: renaming classes and including userProfileSerive exception

2017-02-02 Thread machristie
http://git-wip-us.apache.org/repos/asf/airavata/blob/39e22204/modules/user-profile/user-profile-stubs/src/main/java/org/apache/airavata/userprofile/cpi/exception/UserProfileServiceException.java -- diff --git

[14/14] airavata git commit: Merge branch 'userProfileService' of https://github.com/anujbhan/airavata into develop

2017-02-02 Thread machristie
Merge branch 'userProfileService' of https://github.com/anujbhan/airavata into develop This closes #94 NOTE: I commented out the USER_PROFILE service in ServerMain.java Project: http://git-wip-us.apache.org/repos/asf/airavata/repo Commit:

[05/14] airavata git commit: adding dependancy for user-profile service in distribution pom

2017-02-02 Thread machristie
adding dependancy for user-profile service in distribution pom Project: http://git-wip-us.apache.org/repos/asf/airavata/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/baaed53a Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/baaed53a Diff:

[13/14] airavata git commit: updating some external dependencies

2017-02-02 Thread machristie
updating some external dependencies Project: http://git-wip-us.apache.org/repos/asf/airavata/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/b642ce9d Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/b642ce9d Diff:

[06/14] airavata git commit: adding user profile service to server module

2017-02-02 Thread machristie
adding user profile service to server module Project: http://git-wip-us.apache.org/repos/asf/airavata/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/c6ba43bf Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/c6ba43bf Diff:

[02/14] airavata git commit: making corrections to user profile service code

2017-02-02 Thread machristie
http://git-wip-us.apache.org/repos/asf/airavata/blob/8f6f2183/modules/user-profile/user-profile-stubs/src/main/java/org/apache/airavata/userprofile/crude/cpi/UserProfileCrudeService.java -- diff --git

[01/14] airavata git commit: making corrections to user profile service code

2017-02-02 Thread machristie
Repository: airavata Updated Branches: refs/heads/develop 7a662756d -> 80dbaba6f http://git-wip-us.apache.org/repos/asf/airavata/blob/8f6f2183/modules/user-profile/user-profile-stubs/src/main/java/org/apache/airavata/userprofile/crude/cpi/user_profile_crud_cpiConstants.java

airavata git commit: AIRAVATA-2305 Changing local deploy to assume already built distribution

2017-02-02 Thread machristie
Repository: airavata Updated Branches: refs/heads/develop 59c812ba1 -> 4beadefdc AIRAVATA-2305 Changing local deploy to assume already built distribution Project: http://git-wip-us.apache.org/repos/asf/airavata/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/4beadefd

airavata git commit: AIRAVATA-2305 Adding PGA deploy scripts

2017-02-02 Thread machristie
Repository: airavata Updated Branches: refs/heads/develop 4beadefdc -> 7a662756d AIRAVATA-2305 Adding PGA deploy scripts Project: http://git-wip-us.apache.org/repos/asf/airavata/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/7a662756 Tree:

[01/21] airavata-php-gateway git commit: AIRAVATA-1397 File size detection for opt. input files

2017-02-01 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/dreg-gateway fc04148bd -> dae6cd756 AIRAVATA-1397 File size detection for opt. input files Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit:

[17/21] airavata-php-gateway git commit: AIRAVATA-2223 Only load project when owned by user

2017-02-01 Thread machristie
AIRAVATA-2223 Only load project when owned by user Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/9b300d66 Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/9b300d66 Diff:

[07/21] airavata-php-gateway git commit: AIRAVATA-1397 removed savedExp, clonedExp flags

2017-02-01 Thread machristie
AIRAVATA-1397 removed savedExp, clonedExp flags savedExp wasn't consistently applied, but rather than consistently applying it I removed this flag along with clonedExp since it doesn't appear to be needed. The only relevant fact is whether an existing experiment is being edited which is easily

[12/21] airavata-php-gateway git commit: AIRAVATA-2223 Fix sharing disabled bugs

2017-02-01 Thread machristie
AIRAVATA-2223 Fix sharing disabled bugs Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/b68d9a8d Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/b68d9a8d Diff:

[21/21] airavata-php-gateway git commit: appending the last commit

2017-02-01 Thread machristie
appending the last commit Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/dae6cd75 Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/dae6cd75 Diff:

[18/21] airavata-php-gateway git commit: fixing AIRAVATA-1885 : Cannot add data movement interface for a new storage resource as scigap admin. Page crashes in PGA

2017-02-01 Thread machristie
fixing AIRAVATA-1885 : Cannot add data movement interface for a new storage resource as scigap admin. Page crashes in PGA Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/d9cbd6c5 Tree:

[08/21] airavata-php-gateway git commit: AIRAVATA-1397 Fixing editing optional upload files

2017-02-01 Thread machristie
AIRAVATA-1397 Fixing editing optional upload files Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/0edd8bdd Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/0edd8bdd Diff:

[15/21] airavata-php-gateway git commit: Brand logo modifications for theming.

2017-02-01 Thread machristie
Brand logo modifications for theming. Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/6e37d636 Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/6e37d636 Diff:

[02/21] airavata-php-gateway git commit: AIRAVATA-1397 Display max upload file size in form

2017-02-01 Thread machristie
AIRAVATA-1397 Display max upload file size in form Also no longer using 'server-allowed'file-size' from pga_config.php. Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/d0af4e3b Tree:

[20/21] airavata-php-gateway git commit: appending the last commit

2017-02-01 Thread machristie
appending the last commit Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/3c945375 Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/3c945375 Diff:

[13/21] airavata-php-gateway git commit: AIRAVATA-2223 Remove $experiment_can_write check when sharing disabled

2017-02-01 Thread machristie
AIRAVATA-2223 Remove $experiment_can_write check when sharing disabled Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/b0b5152e Tree:

[10/21] airavata-php-gateway git commit: Merge branch 'AIRAVATA-1397-max-filesize-exceeded-uploads' into develop

2017-02-01 Thread machristie
Merge branch 'AIRAVATA-1397-max-filesize-exceeded-uploads' into develop This should fix AIRAVATA-1397 Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/bfd2c06d Tree:

[05/21] airavata-php-gateway git commit: AIRAVATA-1397 Set upload_max_filesize to 64M in .htaccess

2017-02-01 Thread machristie
AIRAVATA-1397 Set upload_max_filesize to 64M in .htaccess These settings in .htaccess override whatever is in /etc/php.ini. This provides a better out of the box default max upload size. Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit:

[19/21] airavata-php-gateway git commit: fixing AIRAVATA-2269 : The gateway admin cannot get access to the gateway even with 'admin' role

2017-02-01 Thread machristie
fixing AIRAVATA-2269 : The gateway admin cannot get access to the gateway even with 'admin' role There is a bug in WSO2 IS which doest not return the admin role for the default admin user. Hence as a workaround we manually add it here. Project:

[09/21] airavata-php-gateway git commit: AIRAVATA-1397 edit experiment: add updateList function

2017-02-01 Thread machristie
AIRAVATA-1397 edit experiment: add updateList function updateList function, which displays a list of optional upload files selected, was not there on the experiemnt edit page (was only on experiment create page). Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit:

[14/21] airavata-php-gateway git commit: Documentation for Theming added.

2017-02-01 Thread machristie
Documentation for Theming added. Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/998ac381 Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/998ac381 Diff:

[11/21] airavata-php-gateway git commit: updating thrift generated libraries

2017-02-01 Thread machristie
updating thrift generated libraries Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/fd292859 Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/fd292859 Diff:

[16/21] airavata-php-gateway git commit: How to add brand logo

2017-02-01 Thread machristie
How to add brand logo Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/dc971cb4 Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/dc971cb4 Diff:

[03/21] airavata-php-gateway git commit: AIRAVATA-1397 Couple small fixes I noticed

2017-02-01 Thread machristie
AIRAVATA-1397 Couple small fixes I noticed * fix for updating memory when editing an experiment * removing unused "selected-queue" form parameter Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit:

[04/21] airavata-php-gateway git commit: AIRAVATA-1397 Display error when file upload too big

2017-02-01 Thread machristie
AIRAVATA-1397 Display error when file upload too big Throws and displays error when file upload exceeds upload_max_filesize or any other error with uploading the file. Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit:

[06/21] airavata-php-gateway git commit: AIRAVATA-1397 Fix client side checking for opt input files

2017-02-01 Thread machristie
AIRAVATA-1397 Fix client side checking for opt input files Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/9e75b854 Tree:

airavata-php-gateway git commit: encode/decode url links for genome browser

2017-02-07 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/dreg-gateway b3ba3e3bc -> ba4e57427 encode/decode url links for genome browser Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit:

airavata-docs git commit: SELinux command to make user data dir writeable by httpd

2017-02-08 Thread machristie
Repository: airavata-docs Updated Branches: refs/heads/master 9db404b1a -> 91f7ce670 SELinux command to make user data dir writeable by httpd Project: http://git-wip-us.apache.org/repos/asf/airavata-docs/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-docs/commit/91f7ce67 Tree:

airavata-docs git commit: Fixing code block inside list item

2017-02-08 Thread machristie
Repository: airavata-docs Updated Branches: refs/heads/master 91f7ce670 -> 7b4f1e4e9 Fixing code block inside list item Project: http://git-wip-us.apache.org/repos/asf/airavata-docs/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-docs/commit/7b4f1e4e Tree:

airavata-php-gateway git commit: bug in json file for genome browser

2017-02-06 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/dreg-gateway e11970022 -> cbd43e133 bug in json file for genome browser Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/cbd43e13

airavata-php-gateway git commit: bug in track json

2017-02-06 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/dreg-gateway cbd43e133 -> b3ba3e3bc bug in track json Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/b3ba3e3b Tree:

[1/2] airavata-php-gateway git commit: dreg theme

2017-02-03 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/dreg-gateway dae6cd756 -> e11970022 dreg theme Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/25339377 Tree:

[2/2] airavata-php-gateway git commit: customized gateway for dREG

2017-02-03 Thread machristie
customized gateway for dREG Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/e1197002 Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/e1197002 Diff:

airavata git commit: AIRAVATA-2305 Specifying user for non-privileged code deploy

2017-02-03 Thread machristie
Repository: airavata Updated Branches: refs/heads/develop 80dbaba6f -> eb2c38362 AIRAVATA-2305 Specifying user for non-privileged code deploy Project: http://git-wip-us.apache.org/repos/asf/airavata/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/eb2c3836 Tree:

airavata-php-gateway git commit: AIRAVATA-2223 Only load project when owned by user

2017-01-26 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/develop dc971cb41 -> 9b300d66c AIRAVATA-2223 Only load project when owned by user Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit:

[2/3] airavata-php-gateway git commit: Update on the document page

2017-02-22 Thread machristie
Update on the document page Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/135022fb Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/135022fb Diff:

[3/3] airavata-php-gateway git commit: Merge branch 'dreg-gateway' of https://github.com/Danko-Lab/airavata-php-gateway into dreg-gateway

2017-02-22 Thread machristie
Merge branch 'dreg-gateway' of https://github.com/Danko-Lab/airavata-php-gateway into dreg-gateway Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/dc0c79c4 Tree:

[1/3] airavata-php-gateway git commit: sync codes to remove user-pending status

2017-02-22 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/dreg-gateway 8f3d7621e -> dc0c79c41 sync codes to remove user-pending status Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit:

[1/2] airavata-php-gateway git commit: Rbase64; remove queue name; download link

2017-02-20 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/dreg-gateway 75929d779 -> 8f3d7621e Rbase64; remove queue name; download link Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit:

[2/2] airavata-php-gateway git commit: Merge branch 'dreg-gateway' of https://github.com/Danko-Lab/airavata-php-gateway into dreg-gateway

2017-02-20 Thread machristie
Merge branch 'dreg-gateway' of https://github.com/Danko-Lab/airavata-php-gateway into dreg-gateway Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/8f3d7621 Tree:

airavata git commit: AIRAVATA-2322 Fail experiment when validation fails

2017-02-14 Thread machristie
Repository: airavata Updated Branches: refs/heads/develop 0926abf09 -> cfb0610fb AIRAVATA-2322 Fail experiment when validation fails Also add an experiment error messages with the validation error message, so that the user can see the validation error. Project:

[1/2] airavata-php-gateway git commit: AIRAVATA-2312 Removing unused method

2017-02-09 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/develop 6f55b5b18 -> 9765c1e25 AIRAVATA-2312 Removing unused method AdminController::updateUserRoles isn't routed to or referenced internally Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit:

[2/2] airavata-php-gateway git commit: AIRAVATA-2312 Adds 'initial-role-name' to pga_config.php

2017-02-09 Thread machristie
AIRAVATA-2312 Adds 'initial-role-name' to pga_config.php 'initial-role-name' defaults to 'user-pending' but can be customized to automatically assign new users to the given role. The main use case for this is to set 'initial-role-name' to 'gateway-user' to provide new users access to the gateway

airavata-php-gateway git commit: adding partial download

2017-02-09 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/dreg-gateway ba4e57427 -> 003801168 adding partial download Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/00380116 Tree:

airavata-php-gateway git commit: AIRAVATA-2278 Remove Roles link from admin sidebar

2017-02-16 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/develop 70f85239e -> aba44b611 AIRAVATA-2278 Remove Roles link from admin sidebar Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit:

[03/12] airavata-php-gateway git commit: AIRAVATA-2266 : When tried to create tenant it asked to enter the auth key and the secret

2017-02-15 Thread machristie
AIRAVATA-2266 : When tried to create tenant it asked to enter the auth key and the secret Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/c4c63b78 Tree:

[11/12] airavata-php-gateway git commit: Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata-php-gateway into develop

2017-02-15 Thread machristie
Merge branch 'develop' of https://git-wip-us.apache.org/repos/asf/airavata-php-gateway into develop Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/f199d9b8 Tree:

[01/12] airavata-php-gateway git commit: fixing AIRAVATA-2265 : in SciGaP latest record should be on top of the list in Gateway requests.

2017-02-15 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/dreg-gateway 003801168 -> 75929d779 fixing AIRAVATA-2265 : in SciGaP latest record should be on top of the list in Gateway requests. Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit:

[06/12] airavata-php-gateway git commit: AIRAVATA-2312 Adds 'initial-role-name' to pga_config.php

2017-02-15 Thread machristie
AIRAVATA-2312 Adds 'initial-role-name' to pga_config.php 'initial-role-name' defaults to 'user-pending' but can be customized to automatically assign new users to the given role. The main use case for this is to set 'initial-role-name' to 'gateway-user' to provide new users access to the gateway

[07/12] airavata-php-gateway git commit: http HEAD

2017-02-15 Thread machristie
http HEAD Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/206e8d1f Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/206e8d1f Diff:

[09/12] airavata-php-gateway git commit: modification for file download from genome browser

2017-02-15 Thread machristie
modification for file download from genome browser Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/d5533b06 Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/d5533b06 Diff:

[02/12] airavata-php-gateway git commit: fixing AIRAVATA-2267 : In view credential please show the domain.

2017-02-15 Thread machristie
fixing AIRAVATA-2267 : In view credential please show the domain. Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/4c47e540 Tree:

[05/12] airavata-php-gateway git commit: AIRAVATA-2312 Removing unused method

2017-02-15 Thread machristie
AIRAVATA-2312 Removing unused method AdminController::updateUserRoles isn't routed to or referenced internally Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/773e542c Tree:

[08/12] airavata-php-gateway git commit: Merge HEAD route

2017-02-15 Thread machristie
Merge HEAD route Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/2c64ac00 Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/2c64ac00 Diff:

[04/12] airavata-php-gateway git commit: fixing wrong parameter names in compute resource pref

2017-02-15 Thread machristie
fixing wrong parameter names in compute resource pref Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/6f55b5b1 Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/6f55b5b1

[12/12] airavata-php-gateway git commit: Merge remote-tracking branch 'origin/develop' into dreg-gateway

2017-02-15 Thread machristie
Merge remote-tracking branch 'origin/develop' into dreg-gateway Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/75929d77 Tree:

[10/12] airavata-php-gateway git commit: Making sidebar sticky.

2017-02-15 Thread machristie
Making sidebar sticky. Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/db5eba49 Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/db5eba49 Diff:

[2/2] airavata git commit: AIRAVATA-2305 Removing duplicate Ansible scripts

2017-01-23 Thread machristie
AIRAVATA-2305 Removing duplicate Ansible scripts Project: http://git-wip-us.apache.org/repos/asf/airavata/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/306599f8 Tree: http://git-wip-us.apache.org/repos/asf/airavata/tree/306599f8 Diff:

[1/2] airavata git commit: AIRAVATA-2305 Airavata deploy scripts

2017-01-23 Thread machristie
Repository: airavata Updated Branches: refs/heads/develop aae071177 -> e0fbde2b9 AIRAVATA-2305 Airavata deploy scripts Currently this deploys out updated code for api-orch and registry only Project: http://git-wip-us.apache.org/repos/asf/airavata/repo Commit:

[02/10] airavata-php-gateway git commit: AIRAVATA-1397 Display max upload file size in form

2017-01-19 Thread machristie
AIRAVATA-1397 Display max upload file size in form Also no longer using 'server-allowed'file-size' from pga_config.php. Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/d0af4e3b Tree:

[03/10] airavata-php-gateway git commit: AIRAVATA-1397 Couple small fixes I noticed

2017-01-19 Thread machristie
AIRAVATA-1397 Couple small fixes I noticed * fix for updating memory when editing an experiment * removing unused "selected-queue" form parameter Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit:

[05/10] airavata-php-gateway git commit: AIRAVATA-1397 Set upload_max_filesize to 64M in .htaccess

2017-01-19 Thread machristie
AIRAVATA-1397 Set upload_max_filesize to 64M in .htaccess These settings in .htaccess override whatever is in /etc/php.ini. This provides a better out of the box default max upload size. Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit:

[04/10] airavata-php-gateway git commit: AIRAVATA-1397 Display error when file upload too big

2017-01-19 Thread machristie
AIRAVATA-1397 Display error when file upload too big Throws and displays error when file upload exceeds upload_max_filesize or any other error with uploading the file. Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit:

[06/10] airavata-php-gateway git commit: AIRAVATA-1397 Fix client side checking for opt input files

2017-01-19 Thread machristie
AIRAVATA-1397 Fix client side checking for opt input files Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/9e75b854 Tree:

[10/10] airavata-php-gateway git commit: Merge branch 'AIRAVATA-1397-max-filesize-exceeded-uploads' into develop

2017-01-19 Thread machristie
Merge branch 'AIRAVATA-1397-max-filesize-exceeded-uploads' into develop This should fix AIRAVATA-1397 Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/bfd2c06d Tree:

[09/10] airavata-php-gateway git commit: AIRAVATA-1397 edit experiment: add updateList function

2017-01-19 Thread machristie
AIRAVATA-1397 edit experiment: add updateList function updateList function, which displays a list of optional upload files selected, was not there on the experiemnt edit page (was only on experiment create page). Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit:

[01/10] airavata-php-gateway git commit: AIRAVATA-1397 File size detection for opt. input files

2017-01-19 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/develop fc04148bd -> bfd2c06da AIRAVATA-1397 File size detection for opt. input files Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit:

[08/10] airavata-php-gateway git commit: AIRAVATA-1397 Fixing editing optional upload files

2017-01-19 Thread machristie
AIRAVATA-1397 Fixing editing optional upload files Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/0edd8bdd Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/0edd8bdd Diff:

[07/10] airavata-php-gateway git commit: AIRAVATA-1397 removed savedExp, clonedExp flags

2017-01-19 Thread machristie
AIRAVATA-1397 removed savedExp, clonedExp flags savedExp wasn't consistently applied, but rather than consistently applying it I removed this flag along with clonedExp since it doesn't appear to be needed. The only relevant fact is whether an existing experiment is being edited which is easily

airavata-php-gateway git commit: AIRAVATA-2223 Fix sharing disabled bugs

2017-01-20 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/develop fd292859d -> b68d9a8d8 AIRAVATA-2223 Fix sharing disabled bugs Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/b68d9a8d

airavata-php-gateway git commit: AIRAVATA-2223 Remove $experiment_can_write check when sharing disabled

2017-01-20 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/develop b68d9a8d8 -> b0b5152e5 AIRAVATA-2223 Remove $experiment_can_write check when sharing disabled Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit:

airavata-php-gateway git commit: AIRAVATA-2225 Removing 'Enable Autoscheduling' from UI

2017-01-10 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/develop acfed2f44 -> 4ece55fa2 AIRAVATA-2225 Removing 'Enable Autoscheduling' from UI Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit:

airavata-php-gateway git commit: AIRAVATA-2263 Block sharing modal while loading users

2017-01-10 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/develop f4356c5f4 -> acfed2f44 AIRAVATA-2263 Block sharing modal while loading users Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit:

airavata-php-gateway git commit: AIRAVATA-1841 Only check if airavata up if user is authorized

2017-01-10 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/develop 4ece55fa2 -> 47fef07ee AIRAVATA-1841 Only check if airavata up if user is authorized Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit:

[2/2] airavata-php-gateway git commit: AIRAVATA-1841 Redirect to home when Airavata is down

2017-01-10 Thread machristie
AIRAVATA-1841 Redirect to home when Airavata is down Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/e95897f5 Tree: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/tree/e95897f5

[1/2] airavata-php-gateway git commit: AIRAVATA-1841 if airavata is down, log user out when they log in

2017-01-10 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/develop 6d2386250 -> f4356c5f4 AIRAVATA-1841 if airavata is down, log user out when they log in Handles the case where user logs in but Airavata is down. We want to log the user out so that first log in initialization can be done

airavata-php-gateway git commit: AIRAVATA-1841 Completely log out user when airavata is down

2017-01-11 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/develop 47fef07ee -> fc04148bd AIRAVATA-1841 Completely log out user when airavata is down Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit:

airavata-php-gateway git commit: AIRAVATA-2278 Remove link to Roles UI from admin dashboard

2017-01-05 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/develop 166f18a9b -> 696f9cd9a AIRAVATA-2278 Remove link to Roles UI from admin dashboard Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit:

[1/2] airavata git commit: AIRAVATA-2282 notification sort: Prevent int overflow

2016-12-30 Thread machristie
Repository: airavata Updated Branches: refs/heads/master e429faafa -> 6fcd3941b AIRAVATA-2282 notification sort: Prevent int overflow Instead of returning the difference as a long and casting to an int, which risks integer overflow, just return 1 or -1 corresponding to the sign of the

[2/2] airavata git commit: Merge branch 'AIRAVATA-2282-notification-order' of https://github.com/machristie/airavata

2016-12-30 Thread machristie
Merge branch 'AIRAVATA-2282-notification-order' of https://github.com/machristie/airavata This closes #90 Project: http://git-wip-us.apache.org/repos/asf/airavata/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata/commit/6fcd3941 Tree: http://git-wip-us.apache.org/repos/asf/airavata

airavata-php-gateway git commit: AIRAVATA-2295 Handle missing default SSH credential

2016-12-30 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/develop 67c21ca66 -> 0bb7892b8 AIRAVATA-2295 Handle missing default SSH credential A user should not be able to delete their default SSH credential. However, if that should happen because of a bug or something, then this change

airavata-php-gateway git commit: AIRAVATA-2041 Display friendly error when exp id doesn't exist

2017-01-04 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/develop 0bb7892b8 -> b7d80b118 AIRAVATA-2041 Display friendly error when exp id doesn't exist Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit:

airavata-php-gateway git commit: AIRAVATA-2297 Upgrade PHPMailer and swiftmailer

2017-01-05 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/develop b7d80b118 -> 166f18a9b AIRAVATA-2297 Upgrade PHPMailer and swiftmailer Note: for the upgrade to take effect, `composer update` must be run in an existing PGA installation. Project:

airavata-php-gateway git commit: AIRAVATA-2263 Check for unauthorized experiment access

2017-01-09 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/develop 84c359279 -> 6d2386250 AIRAVATA-2263 Check for unauthorized experiment access This handles the case where an experiment is shared with a user, the user opens the experiment summary page, the experiment is unshared, and then

airavata-php-gateway git commit: Properly closing div in experiment-inputs

2017-01-06 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/master 533faa718 -> 98a620d9c Properly closing div in experiment-inputs This was causing a layout issue with the theme in the new IU Cybergateway. Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit:

airavata-php-gateway git commit: Properly closing div in experiment-inputs

2017-01-06 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/develop 696f9cd9a -> a5f317f02 Properly closing div in experiment-inputs This was causing a layout issue with the theme in the new IU Cybergateway. Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit:

[1/2] airavata-php-gateway git commit: AIRAVATA-1887 Ordering tasks by taskDag

2017-01-06 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/develop a5f317f02 -> 84c359279 AIRAVATA-1887 Ordering tasks by taskDag Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/a7249ed3

[2/2] airavata-php-gateway git commit: AIRAVATA-1887 Add task status time and reason

2017-01-06 Thread machristie
AIRAVATA-1887 Add task status time and reason Also better job description formatting. Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/commit/84c35927 Tree:

[1/2] airavata-php-gateway git commit: AIRAVATA-1792 Only add extra filters when given

2016-12-28 Thread machristie
Repository: airavata-php-gateway Updated Branches: refs/heads/develop 79ff06b57 -> 1563d9fe6 AIRAVATA-1792 Only add extra filters when given Project: http://git-wip-us.apache.org/repos/asf/airavata-php-gateway/repo Commit:

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