[jira] [Commented] (BEAM-5628) Several VcfIO tests fail in Python 3 with TypeError: cannot use a string pattern on a bytes-like object

2018-10-12 Thread Valentyn Tymofieiev (JIRA)
[ https://issues.apache.org/jira/browse/BEAM-5628?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16648695#comment-16648695 ] Valentyn Tymofieiev commented on BEAM-5628: --- cc [~arostami], one of VCF IO authors. > Several

[jira] [Commented] (BEAM-5628) Several VcfIO tests fail in Python 3 with TypeError: cannot use a string pattern on a bytes-like object

2018-10-12 Thread Valentyn Tymofieiev (JIRA)
[ https://issues.apache.org/jira/browse/BEAM-5628?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16648694#comment-16648694 ] Valentyn Tymofieiev commented on BEAM-5628: --- Looks like VCF IO is using another package (PyVCF).

[jira] [Commented] (BEAM-5628) Several VcfIO tests fail in Python 3 with TypeError: cannot use a string pattern on a bytes-like object

2018-10-12 Thread Simon (JIRA)
[ https://issues.apache.org/jira/browse/BEAM-5628?page=com.atlassian.jira.plugin.system.issuetabpanels:comment-tabpanel=16647969#comment-16647969 ] Simon commented on BEAM-5628: - This error can be traced back to the _create_generator function (io/vcfio.py: