Author: seanfinan
Date: Sun Feb 4 19:12:03 2018
New Revision: 1823103
URL: http://svn.apache.org/viewvc?rev=1823103&view=rev
Log:
Set patientId in patient cas
Modified:
ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/patient/PatientNoteStore.java
ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/util/SourceMetadataUtil.java
Modified:
ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/patient/PatientNoteStore.java
URL:
http://svn.apache.org/viewvc/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/patient/PatientNoteStore.java?rev=1823103&r1=1823102&r2=1823103&view=diff
==============================================================================
---
ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/patient/PatientNoteStore.java
(original)
+++
ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/patient/PatientNoteStore.java
Sun Feb 4 19:12:03 2018
@@ -3,6 +3,8 @@ package org.apache.ctakes.core.patient;
import org.apache.ctakes.core.util.DocumentIDAnnotationUtil;
import org.apache.ctakes.core.util.SourceMetadataUtil;
+import org.apache.ctakes.typesystem.type.structured.DocumentIdPrefix;
+import org.apache.ctakes.typesystem.type.structured.Metadata;
import org.apache.log4j.Logger;
import org.apache.uima.UIMAException;
import org.apache.uima.cas.CASException;
@@ -239,6 +241,7 @@ public enum PatientNoteStore {
if ( patientCas == null ) {
try {
patientCas = JCasFactory.createJCas();
+ setPatientId( patientCas, patientId );
_patientMap.put( patientId, patientCas );
} catch ( UIMAException uE ) {
LOGGER.error( uE.getMessage() );
@@ -260,6 +263,20 @@ public enum PatientNoteStore {
}
}
+ /**
+ * Make sure the patient cas contains its patient id
+ *
+ * @param jCas -
+ * @param patientId -
+ */
+ static private void setPatientId( final JCas jCas, final String patientId )
{
+ final DocumentIdPrefix documentIdPrefix = new DocumentIdPrefix( jCas );
+ documentIdPrefix.setDocumentIdPrefix( patientId );
+ documentIdPrefix.addToIndexes();
+ final Metadata metadata = SourceMetadataUtil.getOrCreateMetadata( jCas );
+ metadata.setPatientIdentifier( patientId );
+ }
+
///////////////// view fetchers ///////////////
/**
Modified:
ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/util/SourceMetadataUtil.java
URL:
http://svn.apache.org/viewvc/ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/util/SourceMetadataUtil.java?rev=1823103&r1=1823102&r2=1823103&view=diff
==============================================================================
---
ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/util/SourceMetadataUtil.java
(original)
+++
ctakes/trunk/ctakes-core/src/main/java/org/apache/ctakes/core/util/SourceMetadataUtil.java
Sun Feb 4 19:12:03 2018
@@ -56,7 +56,7 @@ final public class SourceMetadataUtil {
* @param jcas ye olde jay-cas
* @return the Metadata for the given jcas or null if one is not found
*/
- static private Metadata getMetadata( final JCas jcas ) {
+ static public Metadata getMetadata( final JCas jcas ) {
final Collection<Metadata> metadatas = JCasUtil.select( jcas,
Metadata.class );
if ( metadatas == null || metadatas.isEmpty() ) {
return null;
@@ -65,6 +65,20 @@ final public class SourceMetadataUtil {
}
/**
+ * @param jCas ye olde jay-cas
+ * @return the Metadata for the given jcas
+ */
+ static public Metadata getOrCreateMetadata( final JCas jCas ) {
+ final Metadata metadata = getMetadata( jCas );
+ if ( metadata != null ) {
+ return metadata;
+ }
+ final Metadata newMetadata = new Metadata( jCas );
+ newMetadata.addToIndexes();
+ return newMetadata;
+ }
+
+ /**
* The first step in utilizing SourceData is getting it!
*
* @param jcas ye olde jay-cas
@@ -79,6 +93,21 @@ final public class SourceMetadataUtil {
}
/**
+ * @param jCas ye olde jay-cas
+ * @return the metadata for the source associated with the jcas
+ */
+ static public SourceData getOrCreateSourceData( final JCas jCas ) {
+ final SourceData sourceData = getSourceData( jCas );
+ if ( sourceData != null ) {
+ return sourceData;
+ }
+ final Metadata metadata = getOrCreateMetadata( jCas );
+ final SourceData newSourceData = new SourceData( jCas );
+ metadata.setSourceData( newSourceData );
+ return newSourceData;
+ }
+
+ /**
* @param sourcedata -
* @return the instance id or -1 if there isn't one
* @throws ResourceProcessException if the internal value is not parseable
as long
