Repository: incubator-taverna-workbench Updated Branches: refs/heads/master 7277241ea -> 164abb32d
Clarify license headers Contributed by Thilina Manamgoda. This closes #6. Project: http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/repo Commit: http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/commit/164abb32 Tree: http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/tree/164abb32 Diff: http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/diff/164abb32 Branch: refs/heads/master Commit: 164abb32d0f7ff1818f888369875713974215760 Parents: 7277241 Author: ThilinaManamgoda <maanafun...@gmail.com> Authored: Wed Sep 21 23:39:17 2016 +0100 Committer: Stian Soiland-Reyes <st...@apache.org> Committed: Wed Sep 21 23:39:17 2016 +0100 ---------------------------------------------------------------------- NOTICE | 39 ++++++++++++++++++++ pom.xml | 8 +++- .../annotatedcontextualview.properties | 17 ++++++++- .../move_scomp_results_into_project.bat | 18 +++++++++ .../scomp_compile_from_web.bat | 18 +++++++++ .../scomp_compile_from_web_to_jar.bat | 18 +++++++++ .../main/help/biocatalogue-plugin-features.html | 15 ++++++++ .../main/help/biocatalogue-plugin-feedback.html | 15 ++++++++ .../src/main/help/biocatalogue-plugin.html | 15 ++++++++ .../src/main/xsd/schema-v1.xsd | 15 ++++++++ .../apache/taverna/reference/ui/package.html | 15 ++++++++ .../taverna/reference/ui/tree/package.html | 15 ++++++++ .../src/main/resources/Map.jhm | 16 ++++++++ .../src/main/resources/sample.hs | 17 +++++++++ .../src/test/resources/log4j.properties | 15 ++++++++ 15 files changed, 253 insertions(+), 3 deletions(-) ---------------------------------------------------------------------- http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/164abb32/NOTICE ---------------------------------------------------------------------- diff --git a/NOTICE b/NOTICE index 66971f6..852e947 100644 --- a/NOTICE +++ b/NOTICE @@ -118,3 +118,42 @@ taverna-ui/src/main/java/org/apache/taverna/lang/ui/treetable/ for use in the design, construction, operation or maintenance of any nuclear facility. +--------------------------------------------------------- +incubator-taverna-workbench/taverna-perspective-biocatalogue/src/main/resources/net/sf/taverna/t2/ui/perspectives/biocatalogue/service_icons/soap_rest_multitype_unknown.pdn + +TODO: License should be clarified + +--------------------------------------------------------- +incubator-taverna-workbench/taverna-perspective-biocatalogue/src/main/resources/net/sf/taverna/t2/ui/perspectives/biocatalogue/famfamfam_silk/ + +Source: http://www.famfamfam.com/lab/icons/silk/ + +Created by Mark James +Licensed as Creative Commons Attribution 3.0 License +http://creativecommons.org/licenses/by/3.0/ + +--------------------------------------------------------- + +taverna-perspective-biocatalogue/src/main/resources/net/sf/taverna/t2/ui/perspectives/biocatalogue/biocatalogue_styles.css +taverna-perspective-biocatalogue/src/main/resources/net/sf/taverna/t2/ui/perspectives/biocatalogue/styles.css +taverna-perspective-biocatalogue/src/main/resources/net/sf/taverna/t2/ui/perspectives/biocatalogue/test.html +taverna-perspective-myexperiment/src/main/resources/org/apache/taverna/ui/perspectives/myexperiment/styles.css + +TODO: License should be clarified + +-------------- +taverna-perspective-biocatalogue/src/main/xsd/dcterms.xsd +taverna-perspective-biocatalogue/src/main/xsd/dc.xsd + +TODO: License should be clarified +Derived from http://dublincore.org/schemas/xmls/qdc/2006/01/06/dc.xsd +http://dublincore.org/schemas/xmls/qdc/2006/01/06/dcterms.xsd + +-------------- + +taverna-perspective-biocatalogue/src/main/xsd/xlink.xsd + +From http://www.loc.gov/standards/mets/xlink.xsd + +TODO: License should be clarified + http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/164abb32/pom.xml ---------------------------------------------------------------------- diff --git a/pom.xml b/pom.xml index bae6697..d7a8308 100644 --- a/pom.xml +++ b/pom.xml @@ -131,10 +131,14 @@ <exclude>**/META-INF/services/</exclude> <!-- No headers in JSON which haven't got comments ... --> <exclude>**/*.json</exclude> - + <!-- License details are mentioned in NOTICE ... --> + <exclude>**/src/main/jjtree/dotparser.jjt</exclude> + <!-- Can't add license headers to a text file --> + <exclude>**/src/main/help/Index-TOC-Map-Additions.txt</exclude> + <exclude>**/src/main/resources/net/sf/taverna/t2/ui/perspectives/biocatalogue/*/*.pdn</exclude> </excludes> </configuration> -</plugin> + </plugin> </plugins> </build> http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/164abb32/taverna-contextual-views-impl/src/main/resources/annotatedcontextualview.properties ---------------------------------------------------------------------- diff --git a/taverna-contextual-views-impl/src/main/resources/annotatedcontextualview.properties b/taverna-contextual-views-impl/src/main/resources/annotatedcontextualview.properties index e3196f6..f26c640 100644 --- a/taverna-contextual-views-impl/src/main/resources/annotatedcontextualview.properties +++ b/taverna-contextual-views-impl/src/main/resources/annotatedcontextualview.properties @@ -1,4 +1,19 @@ +## Licensed to the Apache Software Foundation (ASF) under one or more +## contributor license agreements. See the NOTICE file distributed with +## this work for additional information regarding copyright ownership. +## The ASF licenses this file to You under the Apache License, Version 2.0 +## (the "License"); you may not use this file except in compliance with +## the License. You may obtain a copy of the License at +## +## http://www.apache.org/licenses/LICENSE-2.0 +## +## Unless required by applicable law or agreed to in writing, software +## distributed under the License is distributed on an "AS IS" BASIS, +## WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +## See the License for the specific language governing permissions and +## limitations under the License. + net.sf.taverna.t2.annotation.annotationbeans.FreeTextDescription: Description net.sf.taverna.t2.annotation.annotationbeans.Author: Author net.sf.taverna.t2.annotation.annotationbeans.DescriptiveTitle: Title -net.sf.taverna.t2.annotation.annotationbeans.ExampleValue: Example \ No newline at end of file +net.sf.taverna.t2.annotation.annotationbeans.ExampleValue: Example http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/164abb32/taverna-perspective-biocatalogue/schema_compilation/move_scomp_results_into_project.bat ---------------------------------------------------------------------- diff --git a/taverna-perspective-biocatalogue/schema_compilation/move_scomp_results_into_project.bat b/taverna-perspective-biocatalogue/schema_compilation/move_scomp_results_into_project.bat index 3786d7c..ca5a053 100644 --- a/taverna-perspective-biocatalogue/schema_compilation/move_scomp_results_into_project.bat +++ b/taverna-perspective-biocatalogue/schema_compilation/move_scomp_results_into_project.bat @@ -1,5 +1,23 @@ @echo off +goto LicenseEnd + + Licensed to the Apache Software Foundation (ASF) under one + or more contributor license agreements. See the NOTICE file + distributed with this work for additional information + regarding copyright ownership. The ASF licenses this file + to you under the Apache License, Version 2.0 (the + "License"); you may not use this file except in compliance + with the License. You may obtain a copy of the License at + http://www.apache.org/licenses/LICENSE-2.0 + Unless required by applicable law or agreed to in writing, software + distributed under the License is distributed on an "AS IS" BASIS, + WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + See the License for the specific language governing permissions and + limitations under the License. + +:LicenseEnd + echo This will replace the JAR file with compiled API classes pause del ..\lib\biocatalogue_api_classes.jar http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/164abb32/taverna-perspective-biocatalogue/schema_compilation/scomp_compile_from_web.bat ---------------------------------------------------------------------- diff --git a/taverna-perspective-biocatalogue/schema_compilation/scomp_compile_from_web.bat b/taverna-perspective-biocatalogue/schema_compilation/scomp_compile_from_web.bat index ee10a50..451d8f2 100644 --- a/taverna-perspective-biocatalogue/schema_compilation/scomp_compile_from_web.bat +++ b/taverna-perspective-biocatalogue/schema_compilation/scomp_compile_from_web.bat @@ -1,5 +1,23 @@ @echo off +goto LicenseEnd + + Licensed to the Apache Software Foundation (ASF) under one + or more contributor license agreements. See the NOTICE file + distributed with this work for additional information + regarding copyright ownership. The ASF licenses this file + to you under the Apache License, Version 2.0 (the + "License"); you may not use this file except in compliance + with the License. You may obtain a copy of the License at + http://www.apache.org/licenses/LICENSE-2.0 + Unless required by applicable law or agreed to in writing, software + distributed under the License is distributed on an "AS IS" BASIS, + WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + See the License for the specific language governing permissions and + limitations under the License. + +:LicenseEnd + REM -src . -- put source files here REM -srconly -- only sources, no compiling of java classes, no jar bundling REM -compiler -- where to find javac http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/164abb32/taverna-perspective-biocatalogue/schema_compilation/scomp_compile_from_web_to_jar.bat ---------------------------------------------------------------------- diff --git a/taverna-perspective-biocatalogue/schema_compilation/scomp_compile_from_web_to_jar.bat b/taverna-perspective-biocatalogue/schema_compilation/scomp_compile_from_web_to_jar.bat index dd66206..ab95ff9 100644 --- a/taverna-perspective-biocatalogue/schema_compilation/scomp_compile_from_web_to_jar.bat +++ b/taverna-perspective-biocatalogue/schema_compilation/scomp_compile_from_web_to_jar.bat @@ -1,5 +1,23 @@ @echo off +goto LicenseEnd + + Licensed to the Apache Software Foundation (ASF) under one + or more contributor license agreements. See the NOTICE file + distributed with this work for additional information + regarding copyright ownership. The ASF licenses this file + to you under the Apache License, Version 2.0 (the + "License"); you may not use this file except in compliance + with the License. You may obtain a copy of the License at + http://www.apache.org/licenses/LICENSE-2.0 + Unless required by applicable law or agreed to in writing, software + distributed under the License is distributed on an "AS IS" BASIS, + WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + See the License for the specific language governing permissions and + limitations under the License. + +:LicenseEnd + REM -src . -- put source files here REM -compiler -- where to find javac REM -javasource -- which JAVA version to aim for (1.5 uses generics) http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/164abb32/taverna-perspective-biocatalogue/src/main/help/biocatalogue-plugin-features.html ---------------------------------------------------------------------- diff --git a/taverna-perspective-biocatalogue/src/main/help/biocatalogue-plugin-features.html b/taverna-perspective-biocatalogue/src/main/help/biocatalogue-plugin-features.html index ece2949..bce2b88 100644 --- a/taverna-perspective-biocatalogue/src/main/help/biocatalogue-plugin-features.html +++ b/taverna-perspective-biocatalogue/src/main/help/biocatalogue-plugin-features.html @@ -1,4 +1,19 @@ <html> +<!-- + Licensed to the Apache Software Foundation (ASF) under one + or more contributor license agreements. See the NOTICE file + distributed with this work for additional information + regarding copyright ownership. The ASF licenses this file + to you under the Apache License, Version 2.0 (the + "License"); you may not use this file except in compliance + with the License. You may obtain a copy of the License at + http://www.apache.org/licenses/LICENSE-2.0 + Unless required by applicable law or agreed to in writing, software + distributed under the License is distributed on an "AS IS" BASIS, + WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + See the License for the specific language governing permissions and + limitations under the License. +--> <head> <meta content="text/html; charset=MacRoman" http-equiv="Content-Type"> <link rel="stylesheet" href="./basic.css" type="text/css"> http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/164abb32/taverna-perspective-biocatalogue/src/main/help/biocatalogue-plugin-feedback.html ---------------------------------------------------------------------- diff --git a/taverna-perspective-biocatalogue/src/main/help/biocatalogue-plugin-feedback.html b/taverna-perspective-biocatalogue/src/main/help/biocatalogue-plugin-feedback.html index b2c48b4..a44c698 100644 --- a/taverna-perspective-biocatalogue/src/main/help/biocatalogue-plugin-feedback.html +++ b/taverna-perspective-biocatalogue/src/main/help/biocatalogue-plugin-feedback.html @@ -1,4 +1,19 @@ <html> +<!-- + Licensed to the Apache Software Foundation (ASF) under one + or more contributor license agreements. See the NOTICE file + distributed with this work for additional information + regarding copyright ownership. The ASF licenses this file + to you under the Apache License, Version 2.0 (the + "License"); you may not use this file except in compliance + with the License. You may obtain a copy of the License at + http://www.apache.org/licenses/LICENSE-2.0 + Unless required by applicable law or agreed to in writing, software + distributed under the License is distributed on an "AS IS" BASIS, + WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + See the License for the specific language governing permissions and + limitations under the License. +--> <head> <meta content="text/html; charset=MacRoman" http-equiv="Content-Type"> <link rel="stylesheet" href="./basic.css" type="text/css"> http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/164abb32/taverna-perspective-biocatalogue/src/main/help/biocatalogue-plugin.html ---------------------------------------------------------------------- diff --git a/taverna-perspective-biocatalogue/src/main/help/biocatalogue-plugin.html b/taverna-perspective-biocatalogue/src/main/help/biocatalogue-plugin.html index 152b935..cc622ab 100644 --- a/taverna-perspective-biocatalogue/src/main/help/biocatalogue-plugin.html +++ b/taverna-perspective-biocatalogue/src/main/help/biocatalogue-plugin.html @@ -1,4 +1,19 @@ <html> +<!-- + Licensed to the Apache Software Foundation (ASF) under one + or more contributor license agreements. See the NOTICE file + distributed with this work for additional information + regarding copyright ownership. The ASF licenses this file + to you under the Apache License, Version 2.0 (the + "License"); you may not use this file except in compliance + with the License. You may obtain a copy of the License at + http://www.apache.org/licenses/LICENSE-2.0 + Unless required by applicable law or agreed to in writing, software + distributed under the License is distributed on an "AS IS" BASIS, + WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + See the License for the specific language governing permissions and + limitations under the License. +--> <head> <meta content="text/html; charset=MacRoman" http-equiv="Content-Type"> <link rel="stylesheet" href="./basic.css" type="text/css"> http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/164abb32/taverna-perspective-biocatalogue/src/main/xsd/schema-v1.xsd ---------------------------------------------------------------------- diff --git a/taverna-perspective-biocatalogue/src/main/xsd/schema-v1.xsd b/taverna-perspective-biocatalogue/src/main/xsd/schema-v1.xsd index 6e57dd1..fc37641 100644 --- a/taverna-perspective-biocatalogue/src/main/xsd/schema-v1.xsd +++ b/taverna-perspective-biocatalogue/src/main/xsd/schema-v1.xsd @@ -1,4 +1,19 @@ <?xml version="1.0" encoding="UTF-8"?> +<!-- + Licensed to the Apache Software Foundation (ASF) under one + or more contributor license agreements. See the NOTICE file + distributed with this work for additional information + regarding copyright ownership. The ASF licenses this file + to you under the Apache License, Version 2.0 (the + "License"); you may not use this file except in compliance + with the License. You may obtain a copy of the License at + http://www.apache.org/licenses/LICENSE-2.0 + Unless required by applicable law or agreed to in writing, software + distributed under the License is distributed on an "AS IS" BASIS, + WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + See the License for the specific language governing permissions and + limitations under the License. +--> <xsd:schema targetNamespace="http://www.biocatalogue.org/2009/xml/rest" xml:lang="en" xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns="http://www.biocatalogue.org/2009/xml/rest" elementFormDefault="qualified" xmlns:xlink="http://www.w3.org/1999/xlink" http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/164abb32/taverna-reference-ui/src/main/java/org/apache/taverna/reference/ui/package.html ---------------------------------------------------------------------- diff --git a/taverna-reference-ui/src/main/java/org/apache/taverna/reference/ui/package.html b/taverna-reference-ui/src/main/java/org/apache/taverna/reference/ui/package.html index 25da46b..c4ae10c 100644 --- a/taverna-reference-ui/src/main/java/org/apache/taverna/reference/ui/package.html +++ b/taverna-reference-ui/src/main/java/org/apache/taverna/reference/ui/package.html @@ -1,3 +1,18 @@ +<!-- + Licensed to the Apache Software Foundation (ASF) under one + or more contributor license agreements. See the NOTICE file + distributed with this work for additional information + regarding copyright ownership. The ASF licenses this file + to you under the Apache License, Version 2.0 (the + "License"); you may not use this file except in compliance + with the License. You may obtain a copy of the License at + http://www.apache.org/licenses/LICENSE-2.0 + Unless required by applicable law or agreed to in writing, software + distributed under the License is distributed on an "AS IS" BASIS, + WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + See the License for the specific language governing permissions and + limitations under the License. +--> <body> Panels for use as high level components in a user interface to the reference system http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/164abb32/taverna-reference-ui/src/main/java/org/apache/taverna/reference/ui/tree/package.html ---------------------------------------------------------------------- diff --git a/taverna-reference-ui/src/main/java/org/apache/taverna/reference/ui/tree/package.html b/taverna-reference-ui/src/main/java/org/apache/taverna/reference/ui/tree/package.html index 33b0e21..c0674f2 100644 --- a/taverna-reference-ui/src/main/java/org/apache/taverna/reference/ui/tree/package.html +++ b/taverna-reference-ui/src/main/java/org/apache/taverna/reference/ui/tree/package.html @@ -1,3 +1,18 @@ +<!-- + Licensed to the Apache Software Foundation (ASF) under one + or more contributor license agreements. See the NOTICE file + distributed with this work for additional information + regarding copyright ownership. The ASF licenses this file + to you under the Apache License, Version 2.0 (the + "License"); you may not use this file except in compliance + with the License. You may obtain a copy of the License at + http://www.apache.org/licenses/LICENSE-2.0 + Unless required by applicable law or agreed to in writing, software + distributed under the License is distributed on an "AS IS" BASIS, + WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + See the License for the specific language governing permissions and + limitations under the License. +--> <body> Tree models, drag handlers, renderers and editor support for both pre-registration trees of POJOs (constrained only in terms of overall http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/164abb32/taverna-workbench-impl/src/main/resources/Map.jhm ---------------------------------------------------------------------- diff --git a/taverna-workbench-impl/src/main/resources/Map.jhm b/taverna-workbench-impl/src/main/resources/Map.jhm index ab5f560..3109c73 100644 --- a/taverna-workbench-impl/src/main/resources/Map.jhm +++ b/taverna-workbench-impl/src/main/resources/Map.jhm @@ -1,4 +1,20 @@ <?xml version='1.0' encoding='ISO-8859-1' ?> +<!-- + Licensed to the Apache Software Foundation (ASF) under one + or more contributor license agreements. See the NOTICE file + distributed with this work for additional information + regarding copyright ownership. The ASF licenses this file + to you under the Apache License, Version 2.0 (the + "License"); you may not use this file except in compliance + with the License. You may obtain a copy of the License at + http://www.apache.org/licenses/LICENSE-2.0 + Unless required by applicable law or agreed to in writing, software + distributed under the License is distributed on an "AS IS" BASIS, + WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + See the License for the specific language governing permissions and + limitations under the License. +--> + <!DOCTYPE map PUBLIC "-//Sun Microsystems Inc.//DTD JavaHelp Map Version 1.0//EN" "http://java.sun.com/javase/technologies/desktop/javahelp/map_1_0.dtd"> http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/164abb32/taverna-workbench-impl/src/main/resources/sample.hs ---------------------------------------------------------------------- diff --git a/taverna-workbench-impl/src/main/resources/sample.hs b/taverna-workbench-impl/src/main/resources/sample.hs index 9b43dca..5b282bf 100644 --- a/taverna-workbench-impl/src/main/resources/sample.hs +++ b/taverna-workbench-impl/src/main/resources/sample.hs @@ -1,4 +1,21 @@ <?xml version='1.0' encoding='ISO-8859-1' ?> + +<!-- + Licensed to the Apache Software Foundation (ASF) under one + or more contributor license agreements. See the NOTICE file + distributed with this work for additional information + regarding copyright ownership. The ASF licenses this file + to you under the Apache License, Version 2.0 (the + "License"); you may not use this file except in compliance + with the License. You may obtain a copy of the License at + http://www.apache.org/licenses/LICENSE-2.0 + Unless required by applicable law or agreed to in writing, software + distributed under the License is distributed on an "AS IS" BASIS, + WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. + See the License for the specific language governing permissions and + limitations under the License. +--> + <!DOCTYPE helpset PUBLIC "-//Sun Microsystems Inc.//DTD JavaHelp HelpSet Version 2.0//EN" "../dtd/helpset_2_0.dtd"> http://git-wip-us.apache.org/repos/asf/incubator-taverna-workbench/blob/164abb32/taverna-workbench-impl/src/test/resources/log4j.properties ---------------------------------------------------------------------- diff --git a/taverna-workbench-impl/src/test/resources/log4j.properties b/taverna-workbench-impl/src/test/resources/log4j.properties index fa27070..c3905af 100644 --- a/taverna-workbench-impl/src/test/resources/log4j.properties +++ b/taverna-workbench-impl/src/test/resources/log4j.properties @@ -1,3 +1,18 @@ +## Licensed to the Apache Software Foundation (ASF) under one or more +## contributor license agreements. See the NOTICE file distributed with +## this work for additional information regarding copyright ownership. +## The ASF licenses this file to You under the Apache License, Version 2.0 +## (the "License"); you may not use this file except in compliance with +## the License. You may obtain a copy of the License at +## +## http://www.apache.org/licenses/LICENSE-2.0 +## +## Unless required by applicable law or agreed to in writing, software +## distributed under the License is distributed on an "AS IS" BASIS, +## WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +## See the License for the specific language governing permissions and +## limitations under the License. + log4j.rootLogger=WARN, CONSOLE log4j.logger.net.sf.taverna.t2.workbench=INFO log4j.logger.net.sf.taverna.t2.ui=DEBUG