Hi
I have just downloaded the recent version of coot (following
instructions on Bill Scott's wiki page). However everytime I try and
do anything with NCS - the program shuts down? I am building a large
hexamer and really want to use the 'apply ncs master edits' feature
however the progr
I forgot to add I'm using the fink-installed version of Coot on OSX
10.5.5, intel Mac.
Jon
On Oct 5, 2008, at 7:14 PM, Jonathan Winger wrote:
I'm building a structure in Coot 0.5. Upon real-space refine or
regularize, some of the hydrogens on some residues fly off. It
doesn't seem to be
I realize that I left out a key detail, and had a typo on my last post. I am
running Coot 0.5
on OSX (intel). The error message I see when I try to refine a monomer I
generate with the
CCP4 monomer library sketcher that there are NO restraints found for the ligand
(despite
the fact that I rea
run the pdb file through ccp4's pdbset, which will canonicalize it (if
that is a word).
On Oct 5, 2008, at 5:59 PM, Masaki UNNO wrote:
Hi Colleagues
I am using CNS for structural refinements. I have installed
COOT_0.5 but I
think the new version of COOT cannot display CNS coordinate
I'm building a structure in Coot 0.5. Upon real-space refine or
regularize, some of the hydrogens on some residues fly off. It
doesn't seem to be the old pdb v3 atom-name issue, since other
residues in the structure with exactly the same atom names real-space
refine without any trouble.
Hi Colleagues
I am using CNS for structural refinements. I have installed COOT_0.5 but I
think the new version of COOT cannot display CNS coordinate properly. It
did not display the color by atom and secondly structures. How can I
display the CNS coordinate by atom or so? The CNS version is
Coot 0.5 doesn't support old pdb format and cannot add element column.
m2.pdb is old format, so you must convert it.
for example
pdbset XYZIN m2.pdb XYZOUT m2-pdbset.pdb <
m2-pdbset.pdb
Description: Protein Databank data
