Re: [COOT] SSM problem

2008-10-22 Thread junfeng liu
It worked well on old versions. For coot 0.5,it works when you restart coot or overlap small fragment on big one sometimes . That should be a bug. Is it right Paul? Best wishes! liu Engin Ozkan wrote: Hi everyone, I have a peculiar problem. Whenever I copy fragment a domain, the copied

Re: [COOT] SSM problem

2008-10-22 Thread Paul Emsley
Yes it should. :-( Paul. In message [EMAIL PROTECTED] junfeng liu [EMAIL PROTECTED] writes: It worked well on old versions. For coot 0.5,it works when you restart coot or overlap small fragment on big one sometimes . That should be a bug. Is it right Paul? Best wishes! liu Engin Ozkan

[COOT] edit backbone torsions?

2008-10-22 Thread Michele Lunelli
I recently switched from version 0.4 to version 0.5.1-pre-1 gtk2 revision 1494. It works great, but I cannot find the edit backbone torsions on the Model/Fir/refine menu or somewhere else. Moreover, I cannot find how to modify general torsions. Am I missing something? Thanks for helping

Re: [COOT] edit backbone torsions?

2008-10-22 Thread Michele Lunelli
Kevin Cowtan wrote: Are you looking in the model/fit/refine window, or in the toolbar? The toolbar does not contain everything that is in the window, due to space. Ah, I was missing this point.. Thank you, Michele

Re: [COOT] edit backbone torsions?

2008-10-22 Thread Bernhard Lohkamp
This issue was actually discussed previously here. Anyway as Kevin already mentioned, not all buttons are available in the toolbar. However (in the GTK2 version) you can add your own buttons to the top toolbar (besides the 'Display Manager' button) using the right mouse click. I have provided

Re: [COOT] Flying hydrogen issue in coot 0.5

2008-10-22 Thread Mark Collins
Hi JonHere is a sed script to make life easier.run on command prompt withsed pdb4coot.sed file.pdb > newcoot.pdb pdb4coot.sed Description: Binary data MarkOn Oct 21, 2008, at 10:53 PM, Jonathan Winger wrote:Hi Mark,I compared the names of the H atoms for each of the residue types in my pdb file

Re: [COOT] Flying hydrogen issue in coot 0.5

2008-10-22 Thread Mark Collins
sorry that should have been sed -f pdb4coot.sed file.pdb newcoot.pdb mark On Oct 21, 2008, at 10:53 PM, Jonathan Winger wrote: Hi Mark, I compared the names of the H atoms for each of the residue types in my pdb file with their cif files in the coot monomer library (for example, see