Thanks Paul and Edwin, I will use SSM first . It looks little better
than LSQ .
ta
liu
Paul Emsley wrote:
junfeng liu wrote:
Dear All,
I am overlaying several structures using coot. There are two ways SSM
or LSQ can be used in that package. But I got clearly different
result form the t
junfeng liu wrote:
Dear All,
I am overlaying several structures using coot. There are two ways SSM
or LSQ can be used in that package. But I got clearly different
result form the two methods. In my opinion SSM only works on the
secondary structures and LSQ can works on the whole atoms ,ma
Dear All,
I am overlaying several structures using coot. There are two ways SSM or
LSQ can be used in the package. But I got clearly different result
form the two methods. In my opinion SSM only works on the secondary
structures and LSQ can works on the whole atoms ,main chain or CA.
So t
No, I always turn on the symmetry related molecules.
Bobby Barnett
Original message
>Date: Tue, 16 Dec 2008 10:01:23 +
>From: Eleanor Dodson
>Subject: [COOT] drawing symmetry
>To: COOT@JISCMAIL.AC.UK
>
>Am I alone in thinkingthat the default should be to display symmetry
>rela
Hi Paul,
could you please comment on the precedence of the default settings in either
".coot-preferences/coot-preferences.scm" or its python equivalent. The comments
in the file state that the user should feel free to edit the values, but not
add/delete entries. This could potentially lead to a
Dirk Kostrewa wrote:
Hi Paul,
I still have a ".coot" file in my home folder for a few coot preferences
that I couldn't find in the new
".coot-preferences/coot-preferences.scm". There is a warning that I
should not add commands to this file. So is a "~/.coot" still the proper
place to add def
One more feature:
Auto-open MTZ now automatically opens all avilable maps from a file. It
recognizes the default map column names from refmac, phenix.refine,
phaser, dm, parrot, and pirate.
Paul Emsley wrote:
o FEATURE: A "Delete Molecule" button is now available in the
Display Manag
hooray NCS now works properly (LSQ not SSM)
thanks Paul, Bernhard & Kevin
Phil
On 15 Dec 2008, at 23:42, Paul Emsley wrote:
We are pleased to announce the release of Coot-0.5.2.
This is mostly a bug-fix release (of 0.5/0.5.1) but a few new
features sneaked in too.
source:
http://www.ysb
Hi Paul,
I still have a ".coot" file in my home folder for a few coot
preferences that I couldn't find in the new ".coot-preferences/coot-
preferences.scm". There is a warning that I should not add commands to
this file. So is a "~/.coot" still the proper place to add default
commands for
Hi Eleanor,
this is the first action that I do after loading a molecule: I display
symmetry-related ones. So, I agree, that displaying symmetry-related
copies of a molecule should be set to default (as a user-preference,
maybe).
Dirk.
Am 16.12.2008 um 11:01 schrieb Eleanor Dodson:
Am I
Hi Eleanor,
Two things - firstly this could be distracting as the screen could get
really very busy. Secondly the amount of computer effort this will need
for a big protein could be quite significant.
That said, an easy (i.e. to level menu item) called show symmetry could
be useful - which would
Eleanor Dodson wrote:
Am I alone in thinking that the default should be to display symmetry
related molecules - not to have it turned off?
No, not at all. If you think it should be the default for your or your
group, then add
(set-show-symmetry-master 1)
to the appropriate file.
Paul.
Am I alone in thinkingthat the default should be to display symmetry
related molecules - not to have it turned off?
Eleanor
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