Re: [COOT] Graphics problem running Coot with EdUbuntu 8.10

2009-05-12 Thread Ed Pozharski
It is not a Ubuntu problem. I have the same issue on my laptop, and it's because it has Intel onboard graphics chip. With NVIDIA cards (at least on all the desktops I've seen), coot runs fine when you enable compiz (of course, I do use proprietary nvidia drivers). On Tue, 2009-05-12 at 14:34

Re: [COOT] subversion build on ubuntu 9.04 fails : [: =: unary operator expected error

2009-05-12 Thread hari jayaram
Hello , The jaunty 32 bit build seems to fail ( with subversion revision 2002 as well) It seems like based on what Ed Pozharsky wrote in ..its a problem with guile in Ubuntu jaunty (9.04) .. On my 32 bit , 9.04 installation , the build-it-gtk2-simple script chugs along fine and then declares the

Re: [COOT] subversion build on ubuntu 9.04 fails : [: =: unary operator expected error

2009-05-12 Thread William G. Scott
I have the following guile-like stuff installed, if it is of any help: diablo-% which dpkg-list dpkg-list () { dpkg --list \...@\* } diablo-% dpkg-list guile | grep ii ii guile-1.6-libs 1.6.8-6.3ubuntu1 Main Guile libraries ii

Re: [COOT] ELFCLASS64

2009-05-12 Thread Ed Pozharski
Didn't help. It must have something to do with my configuration. I have no problems on other machines running Hardy. Which executable actually requires this library? I put ldd $coot_real into the xxx/bin/coot script, and it does list many libraries in xxx/lib properly. However, the one in

Re: [COOT] Graphics problem running Coot with EdUbuntu 8.10

2009-05-12 Thread Shaun Lott
I'm running this in undergraduate teaching labs containing cheap Dell boxes or iMacs, both of which are only a couple of years old. Off-hand I don't know what graphics cards the former have, but the latter should have nVidia cards. Maybe it's the drivers? -- Dr J. Shaun Lott AgResearch

[COOT] Fit protein suggestion/query

2009-05-12 Thread Oliver Clarke
Hi, I like the fit protein script - at low resolution, initial rounds of fitting and refinement often result in my leucines/isoleucines having fairly implausible rotamers, and fit protein is a great way of quickly fixing up the worst of these. However, it doesn't seem to deal so well