Re: [COOT] buggy coot 0.6-pre-1 r2264 on OS X 10.4.11

2009-09-09 Thread Ed Pozharski
That may be because core dump is turned off (which is default on many Linux distros). If you are using bash, try ulimit -c to see if it's the case (it'll return the maximum allowed core size). To turn it on, issue ulimit -c unlimited command. For more details, see man bash (not man ulimit as it

Re: [COOT] buggy coot 0.6-pre-1 r2264 on OS X 10.4.11

2009-09-09 Thread William G. Scott
I'm going to make a wild guess and suggest it is a python version mismatch. If you open the python scripting window and type in help() what do you see in the console window? I get this: BL INFO:: command input is: help() Welcome to Python 2.6! This is the online help utility. On

Re: [COOT] Coot and Zalman Stereo

2009-09-09 Thread Bernhard Lohkamp
ok, I enabled zalman stereo for gtk1 versions. This will be available from revision 2289. B *** Dr. Bernhard Lohkamp Assistant Professor Div. Molecular Structural Biology Dept. of Medical Biochemistry and Biophysics (MBB) Karolinska Institutet

Re: [COOT] Coot and Zalman Stereo

2009-09-09 Thread Paul Shaffer
Thank you very much. I will compile and try it out when available. Cheers, Paul On Wed, Sep 9, 2009 at 11:03 AM, Bernhard Lohkamp bernhard.lohk...@ki.sewrote: ok, I enabled zalman stereo for gtk1 versions. This will be available from revision 2289. B

Re: [COOT] Real space refine with hydrogens

2009-09-09 Thread Judit Debreczeni
2009/9/9 Arnaud Basle arnaud.ba...@ncl.ac.uk: Hi, I have a peptide structure at 0.92A and for the latest stage of refinement I would like to real space refine a Met residue including hydrogens. The H are flying away from their original position and density. I am using shelxl for refinement